Rroxscaffold_1G00063580

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0015571
Physical Location & Seq
Reverse (-)
85420227 .. 85420964
738 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063580.1

Sequence Viewer

Length: 738 bp
ATGTCCACCATCAGCGATATAACCGCCTTTGTGCGAGTGAGTATAGCTACGGTCAGTAGCATCGGACATGAGTTTTTGGTCGGAGCAACTAACATCTTGTCTAGCGGAATCCATGGCACCAATGAAGCGAGACGTGATAGGTCAGAAGATACGATCCAGGAATGTGCTATCTGTATGGATGAAATTTCTAGCTTTGATACTGATGAGCCTATTGCTCGCTTGTCCTGCTCACACATTTTTCATGCGAATTGTGTTGAAAAATGGAGGGTGATCGGTAGCAATGGTGGCTTGTGTCCCGTTTGCCGACACACAATAGATGTTGTGGAGGCCGCTCCTGTGCCACCAAGACCCACAAGAAACCGGCCCACACAACACGAAACCCACAGGTTCCCACCTGTTGCCGGCGAGCTAAGAAGATCTTTAAGCACCATAAAATACTGGTCCACAAGATCATTGATATGGCTCGCCGGCGTGCAGCCATCTAGACCCTCAAGGCTGCAGTGGGATATGTATAAGGTTCTCATGTTGGCTGGGAGGTTGATGCTTGTTTACGTCTTGTGCTACCTTTTAATTGAGCAGCTAACTAAGCCGCTTGTTGAGTACATCTTTCATGCGCTCACGTATGCCTTTCAGGCGCTGCTCATGTATGTTCTTCATGCACTGCTCATCTATGTCATACCTATTACTTTGGTCATCATCTTCTTCAGAATCATCTTCTTTGGATACAATCAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006355 GO:0006357 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006928 GO:0006935 GO:0006950 GO:0006974 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0007568 GO:0008045 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010259 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0016043 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0021675 GO:0022008 GO:0023051 GO:0023052 GO:0023056 GO:0030030 GO:0030154 GO:0030163 GO:0030182 GO:0030510 GO:0030511 GO:0030513 GO:0030579 GO:0031175 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032182 GO:0032183 GO:0032184 GO:0032268 GO:0032270 GO:0032446 GO:0032501 GO:0032502 GO:0032989 GO:0032990 GO:0032991 GO:0033554 GO:0034641 GO:0035107 GO:0035108 GO:0035136 GO:0036211 GO:0040011 GO:0042221 GO:0042330 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046332 GO:0046483 GO:0046872 GO:0046914 GO:0048468 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048736 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0060173 GO:0060255 GO:0060384 GO:0061061 GO:0061564 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070911 GO:0071704 GO:0071840 GO:0080090 GO:0090092 GO:0090100 GO:0090287 GO:0090304 GO:0097485 GO:0120036 GO:0120039 GO:0140096 GO:1901360 GO:1901564 GO:1901565 GO:1901575 GO:1902680 GO:1903320 GO:1903322 GO:1903506 GO:1903508 GO:1903844 GO:1903846 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RNF111_N zf-RING_2

Protein Analysis

245

Amino Acids

27.75

Weight (kDa)

8.18

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 53 - 102 1.9e-11 Ring finger domain
zf-RING_11 PF17123 54 - 85 6.3e-08 RING-like zinc finger
zf-RING_5 PF14634 54 - 103 8.5e-07 zinc-RING finger domain
zf-C3HC4_2 PF13923 54 - 101 9.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 55 - 101 8.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-ANAPC11 PF12861 70 - 107 1.5e-06 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 116
AccBSI CCGCTC 1 cut(s) 332
AciI CCGC 4 cut(s) 24, 105, 330, 590
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 688
AfaI GTAC 1 cut(s) 602
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 1 cut(s) 257
AjiI CACGTC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 156
AluBI AGCT 4 cut(s) 47, 192, 409, 580
AluI AGCT 4 cut(s) 47, 192, 409, 580
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 148
AlwNI CAGNNNCTG 1 cut(s) 637
AoxI GGCC 2 cut(s) 327, 362
ApeKI GCWGC 4 cut(s) 475, 496, 577, 637
ApoI RAATTY 1 cut(s) 183
AspLEI GCGC 2 cut(s) 616, 637
AspS9I GGNCC 2 cut(s) 363, 441
AsuHPI GGTGA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 483, 487, 589, 624
BccI CCATC 2 cut(s) 17, 487
BciT130I CCWGG 1 cut(s) 158
BciVI GTATCC 1 cut(s) 716
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 4 cut(s) 102, 189, 483, 736
BfmI CTRYAG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 638
BfuI GTATCC 1 cut(s) 716
BglI GCCNNNNNGGC 1 cut(s) 632
BglII AGATCT 1 cut(s) 416
BisI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
BlsI GCNGC 6 cut(s) 331, 477, 498, 579, 591, 639
Bme1390I CCNGG 1 cut(s) 158
Bme18I GGWCC 1 cut(s) 441
BmgBI CACGTC 1 cut(s) 134
BmgT120I GGNCC 2 cut(s) 363, 441
BmiI GGNNCC 2 cut(s) 118, 389
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 2 cut(s) 69, 531
BpuEI CTTGAG 1 cut(s) 475
BsaAI YACGTR 1 cut(s) 621
BsaJI CCNNGG 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse118I RCCGGY 3 cut(s) 360, 401, 467
Bse1I ACTGG 1 cut(s) 443
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 443
BseXI GCAGC 4 cut(s) 483, 487, 589, 624
BseYI CCCAGC 1 cut(s) 530
BsgI GTGCAG 1 cut(s) 494
BshFI GGCC 2 cut(s) 329, 364
BshNI GGYRCC 1 cut(s) 116
BsiSI CCGG 3 cut(s) 361, 402, 468
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 124
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 2 cut(s) 329, 364
Bsp143I GATC 4 cut(s) 153, 270, 416, 449
Bsp19I CCATGG 1 cut(s) 112
BspACI CCGC 4 cut(s) 24, 105, 330, 590
BspANI GGCC 2 cut(s) 329, 364
BspLI GGNNCC 2 cut(s) 118, 389
BspMAI CTGCAG 1 cut(s) 501
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 286
BsrFI RCCGGY 3 cut(s) 360, 401, 467
BsrI ACTGG 1 cut(s) 443
BssAI RCCGGY 3 cut(s) 360, 401, 467
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 4 cut(s) 153, 270, 416, 449
BssT1I CCWWGG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 621
BstC8I GCNNGC 6 cut(s) 217, 403, 407, 465, 469, 473
BstDEI CTNAG 2 cut(s) 410, 585
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 2 cut(s) 616, 637
BstKTI GATC 4 cut(s) 156, 273, 419, 452
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 4 cut(s) 153, 270, 416, 449
BstMWI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 497
BstV1I GCAGC 4 cut(s) 483, 487, 589, 624
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 2 cut(s) 329, 364
BtgI CCRYGG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 2 cut(s) 506, 659
BtsIMutI CAGTG 2 cut(s) 506, 659
Cac8I GCNNGC 6 cut(s) 217, 403, 407, 465, 469, 473
CaiI CAGNNNCTG 1 cut(s) 637
CfoI GCGC 2 cut(s) 616, 637
Cfr10I RCCGGY 3 cut(s) 360, 401, 467
Cfr13I GGNCC 2 cut(s) 363, 441
Csp6I GTAC 1 cut(s) 601
CviAII CATG 7 cut(s) 68, 113, 242, 523, 611, 643, 656
CviQI GTAC 1 cut(s) 601
DdeI CTNAG 2 cut(s) 410, 585
DpnI GATC 4 cut(s) 155, 272, 418, 451
DpnII GATC 4 cut(s) 153, 270, 416, 449
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 441
Eco57I CTGAAG 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
Esp3I CGTCTC 1 cut(s) 124
FaeI CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
FalI AAGNNNNNCTT 2 cut(s) 403, 435
FaqI GGGAC 1 cut(s) 279
FatI CATG 7 cut(s) 67, 112, 241, 522, 610, 642, 655
Fnu4HI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
FspBI CTAG 4 cut(s) 102, 189, 483, 736
GlaI GCGC 2 cut(s) 615, 636
GluI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
GsaI CCCAGC 1 cut(s) 534
HaeII RGCGCY 1 cut(s) 638
HaeIII GGCC 2 cut(s) 329, 364
HapII CCGG 3 cut(s) 361, 402, 468
HhaI GCGC 2 cut(s) 616, 637
Hin1II CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
Hin6I GCGC 2 cut(s) 614, 635
HinP1I GCGC 2 cut(s) 614, 635
HinfI GANTC 2 cut(s) 108, 708
HpaII CCGG 3 cut(s) 361, 402, 468
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 3 cut(s) 6, 444, 550
Hpy188I TCNGA 4 cut(s) 65, 83, 145, 707
Hpy188III TCNNGA 1 cut(s) 483
Hpy8I GTNNAC 3 cut(s) 6, 444, 550
HpyCH4III ACNGT 1 cut(s) 52
HpyCH4IV ACGT 3 cut(s) 133, 552, 620
HpyCH4V TGCA 3 cut(s) 475, 499, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
HpyF3I CTNAG 2 cut(s) 410, 585
HpySE526I ACGT 3 cut(s) 133, 552, 620
Hsp92II CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
HspAI GCGC 2 cut(s) 614, 635
KroI GCCGGC 2 cut(s) 401, 467
KroNI GCCGGC 2 cut(s) 403, 469
Kzo9I GATC 4 cut(s) 153, 270, 416, 449
LmnI GCTCC 2 cut(s) 83, 337
Lsp1109I GCAGC 4 cut(s) 483, 487, 589, 624
LweI GCATC 2 cut(s) 69, 531
MaeI CTAG 4 cut(s) 102, 189, 483, 736
MaeII ACGT 3 cut(s) 133, 552, 620
MalI GATC 4 cut(s) 155, 272, 418, 451
MbiI CCGCTC 1 cut(s) 332
MboI GATC 4 cut(s) 153, 270, 416, 449
MboII GAAGA 6 cut(s) 158, 426, 644, 691, 694, 706
MflI RGATCY 1 cut(s) 416
MluCI AATT 3 cut(s) 183, 247, 570
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 4 cut(s) 258, 319, 499, 528
MreI CGCCGGCG 1 cut(s) 467
MroNI GCCGGC 2 cut(s) 401, 467
MseI TTAA 2 cut(s) 422, 569
MslI CAYNNNNRTG 1 cut(s) 457
MspI CCGG 3 cut(s) 361, 402, 468
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 4 cut(s) 225, 285, 586, 632
NaeI GCCGGC 2 cut(s) 403, 469
NcoI CCATGG 1 cut(s) 112
NdeII GATC 4 cut(s) 153, 270, 416, 449
NgoMIV GCCGGC 2 cut(s) 401, 467
NlaIII CATG 7 cut(s) 71, 116, 245, 526, 614, 646, 659
NlaIV GGNNCC 2 cut(s) 118, 389
PdiI GCCGGC 2 cut(s) 403, 469
PfeI GAWTC 2 cut(s) 108, 708
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 6 cut(s) 331, 477, 498, 579, 591, 639
Ppu21I YACGTR 1 cut(s) 621
Psp6I CCWGG 1 cut(s) 156
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 118, 389
PspPI GGNCC 2 cut(s) 363, 441
PstI CTGCAG 1 cut(s) 501
PstNI CAGNNNCTG 1 cut(s) 637
PsuI RGATCY 1 cut(s) 416
RsaI GTAC 1 cut(s) 602
RsaNI GTAC 1 cut(s) 601
RseI CAYNNNNRTG 1 cut(s) 457
SaqAI TTAA 2 cut(s) 422, 569
SatI GCNGC 6 cut(s) 330, 476, 497, 578, 590, 638
Sau3AI GATC 4 cut(s) 153, 270, 416, 449
Sau96I GGNCC 2 cut(s) 363, 441
ScrFI CCNGG 1 cut(s) 158
SfaNI GCATC 2 cut(s) 69, 531
SfcI CTRYAG 1 cut(s) 497
SgrAI CRCCGGYG 1 cut(s) 467
SinI GGWCC 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 457
SmlI CTYRAG 1 cut(s) 490
SmoI CTYRAG 1 cut(s) 490
Sse9I AATT 3 cut(s) 183, 247, 570
SsiI CCGC 4 cut(s) 24, 105, 330, 590
SspMI CTAG 4 cut(s) 102, 189, 483, 736
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 52
TaiI ACGT 3 cut(s) 136, 555, 623
TasI AATT 3 cut(s) 183, 247, 570
TatI WGTACW 1 cut(s) 600
TauI GCSGC 2 cut(s) 332, 592
TfiI GAWTC 2 cut(s) 108, 708
Tru1I TTAA 2 cut(s) 422, 569
Tru9I TTAA 2 cut(s) 422, 569
TscAI CASTG 2 cut(s) 506, 666
TseI GCWGC 4 cut(s) 475, 496, 577, 637
TspDTI ATGAA 5 cut(s) 138, 195, 230, 599, 644
TspRI CASTG 2 cut(s) 506, 666
VpaK11BI GGWCC 1 cut(s) 441
XapI RAATTY 1 cut(s) 183
XbaI TCTAGA 1 cut(s) 482
XspI CTAG 4 cut(s) 102, 189, 483, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.