Rroxscaffold_1G00062560

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
84668024 .. 84669575
1552 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00062560.1

Sequence Viewer

Length: 165 bp
ATGGCGCATGAGATAGAAGTGCAAATTGATGAGCAGCCAGCTATTGTTGCAAGGATATTTGAGGCCCTGAAAGTCACCATCCCCTTCCGGCATATTTGCATGGACAGGAAGGACATTGTGACTGTGCAAAAGCACAATGTGGGGAAGAAAGTTCAAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.25

Weight (kDa)

8.98

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AdeI CACNNNGTG 1 cut(s) 139
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 34
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 64
AsuHPI GGTGA 1 cut(s) 67
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 86
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 64
BseGI GGATG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 65
BspANI GGCC 1 cut(s) 65
Bst4CI ACNGT 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 78
BstHHI GCGC 1 cut(s) 7
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 64
CviAII CATG 2 cut(s) 8, 100
CviJI RGCY 3 cut(s) 37, 41, 65
CviKI_1 RGCY 3 cut(s) 37, 41, 65
DraIII CACNNNGTG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 64
FaeI CATG 2 cut(s) 11, 103
FaiI YATR 3 cut(s) 9, 93, 101
FatI CATG 2 cut(s) 7, 99
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 35
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 88
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 11, 103
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 94, 103
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 22, 50, 99, 127
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
Hsp92II CATG 2 cut(s) 11, 103
HspAI GCGC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 51, 80, 91, 101
Lsp1109I GCAGC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 73, 118
MboII GAAGA 1 cut(s) 157
MluCI AATT 1 cut(s) 24
MnlI CCTC 1 cut(s) 55
MspI CCGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 47
NlaIII CATG 2 cut(s) 11, 103
NmuCI GTSAC 2 cut(s) 73, 118
PkrI GCNGC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 64
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 1 cut(s) 64
SetI ASST 1 cut(s) 43
SgeI CNNG 7 cut(s) 20, 50, 63, 79, 100, 112, 118
Sse9I AATT 1 cut(s) 24
TaaI ACNGT 1 cut(s) 124
TasI AATT 1 cut(s) 24
TseFI GTSAC 2 cut(s) 73, 118
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 2 cut(s) 73, 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.