Rmu_sc0003892.1_g000024

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003892.1
OG0015571
Physical Location & Seq
Reverse (-)
123112 .. 123426
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003892.1_g000024.1.cds

Sequence Viewer

Length: 315 bp
atgttcaccatcacggatataaccaccattgtgagaatgagtatagctacggttagtagcatcggacacgagtttatggtcggagcaaataacatcttgtctactggaatccatggtaccaacgaagcgagacctgataggtcagaagatacgatccaggaatgtgctatctgtatggatgaaatttctagctttgataatgatgagcctattgctcgcttgtcctgctcacacatttttcatgcgaattgtgttgaaaaatggagggtgatcagtagcaatggtggcttgtgtcccgttcgcccaaaggcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

5.17

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 1 cut(s) 101
AclWI GGATC 1 cut(s) 148
AcsI RAATTY 1 cut(s) 183
AfaI GTAC 1 cut(s) 118
AgsI TTSAA 1 cut(s) 257
AjnI CCWGG 1 cut(s) 156
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 2 cut(s) 47, 192
AluI AGCT 2 cut(s) 47, 192
Alw26I GTCTC 1 cut(s) 124
AlwI GGATC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 183
Asp718I GGTACC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 280
BanI GGYRCC 1 cut(s) 116
BauI CACGAG 1 cut(s) 68
BccI CCATC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 158
BclI TGATCA 1 cut(s) 270
BcoDI GTCTC 1 cut(s) 124
BfaI CTAG 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 158
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 1 cut(s) 158
BmsI GCATC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 124
BsaJI CCNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 109
Bse3DI GCAATG 1 cut(s) 286
BseBI CCWGG 1 cut(s) 158
BseDI CCNNGG 1 cut(s) 112
BseGI GGATG 1 cut(s) 184
BseMI GCAATG 1 cut(s) 286
BseNI ACTGG 1 cut(s) 109
BshNI GGYRCC 1 cut(s) 116
BslFI GGGAC 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 153, 270
Bsp19I CCATGG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 1 cut(s) 148
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 109
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 153, 270
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 112
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 217
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 2 cut(s) 156, 273
BstMAI GTCTC 1 cut(s) 124
BstMBI GATC 2 cut(s) 153, 270
BstMWI GCNNNNNNNGC 2 cut(s) 225, 285
BstNI CCWGG 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 117
CviAII CATG 2 cut(s) 113, 242
CviJI RGCY 4 cut(s) 47, 192, 208, 288
CviKI_1 RGCY 4 cut(s) 47, 192, 208, 288
CviQI GTAC 1 cut(s) 117
DpnI GATC 2 cut(s) 155, 272
DpnII GATC 2 cut(s) 153, 270
Eco130I CCWWGG 1 cut(s) 112
Eco31I GGTCTC 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 2 cut(s) 116, 245
FaiI YATR 6 cut(s) 20, 44, 77, 114, 176, 243
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 112, 241
FbaI TGATCA 1 cut(s) 270
FblI GTMKAC 1 cut(s) 101
FokI GGATG 1 cut(s) 191
FspBI CTAG 1 cut(s) 189
Hin1II CATG 2 cut(s) 116, 245
HinfI GANTC 1 cut(s) 108
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 2 cut(s) 6, 102
Hpy188I TCNGA 3 cut(s) 65, 83, 145
Hpy8I GTNNAC 2 cut(s) 6, 102
HpyCH4III ACNGT 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 285
Hsp92II CATG 2 cut(s) 116, 245
KpnI GGTACC 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 2 cut(s) 153, 270
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 5 cut(s) 90, 143, 147, 170, 238
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 189
MalI GATC 2 cut(s) 155, 272
MboI GATC 2 cut(s) 153, 270
MboII GAAGA 1 cut(s) 158
MluCI AATT 2 cut(s) 183, 247
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 1 cut(s) 258
MslI CAYNNNNRTG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 158
MvaI CCWGG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 225, 285
NcoI CCATGG 1 cut(s) 112
NdeII GATC 2 cut(s) 153, 270
NlaIII CATG 2 cut(s) 116, 245
NlaIV GGNNCC 1 cut(s) 118
OliI CACNNNNGTG 1 cut(s) 29
PfeI GAWTC 1 cut(s) 108
PfoI TCCNGGA 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 156
PspGI CCWGG 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 118
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
RseI CAYNNNNRTG 1 cut(s) 29
Sau3AI GATC 2 cut(s) 153, 270
ScrFI CCNGG 1 cut(s) 158
SetI ASST 4 cut(s) 49, 136, 143, 194
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 29
Sse9I AATT 2 cut(s) 183, 247
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 156
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 52
TasI AATT 2 cut(s) 183, 247
TfiI GAWTC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 195, 230
TspGWI ACGGA 1 cut(s) 29
XapI RAATTY 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 101
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.