Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0006277

Physical Location & Seq

Genomic Coordinates Reverse (-)

3656724 .. 3661375

Gene Structure 4652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGCCATCATTAACAATGAAGGCTCAATCAAGCACAGGATGTTTAAAAGAAAAAAATGGCCTTCGTGTCTGTCAGAAATCACACATGATTTCTAAGCAAGCATGTTCTTATGCGAAGAGATCTGAACATACGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCTTCAAGCACACAAGTTTCTACTGGGGAAAATGGAAGTGGTGAAGCAATTCATGAGTTTGATGAAGAAGATTCTAAAATTCTGATTCAATCATGCGATTCTCCAACAAAAAGAGCGGAACCCTTCCCCGCCTGCCCATCAAACATGGAGACGATTTTTTCTCCTTCTTTTGACCCCATTGAAGTCCGTAGCGAAGCAAATAGTGAACCAAATGCTGAGAGTGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGGATTTCATGTGACGATCACAATTGTGATGTTTCAGATTTCTACATTTCTGACATGATCATTTCGAGCTTACCCTTCAGTGGGGATGCATTTGCTGATGATATTTGTGAAACAAATTGCTTTCCGGATTACAAATATGCTGAACCAAACATCTTGTTTGATGTTTCTGAGCAATACATGTTATTGCCTTTTCTAGAAGACACTGTCCGAAATAGTAATTCTAATAATCTTGATGATAAATTATATCAAGAAGCCGTTATGGATACAGATCGGGCTGGCTTGTATTTAGAAATTGGTCAAATGAGACCCTGCCTCCAGGATACTGTTATTAACTCGTCTGACTCAGATCAGGCAGAGTGCTTCGATCCACAGTTGTTTATGAAAAATCTACCTGAGTTATCAGATGTCGTATCGAACTTTCAGACCAATTTATTGCCTGAGGAAGCTTCAAAACGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGTGATGATTCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACGGAGGCCACACCTCCAAACGTTCTTGGAGCGAGTTGCAGAAATGTTTGAAGTTGTAGTTTTCACTGCCAGCCAAAGCATCTATGCTGAGCAACTTCTTGATATATTGGATCCATATCGGAAGTTTATATCTCGCCGAGTTTATCGTGAATCATGCATTTTCACAGATGGCAGTTACACTAAAGATTTGACAGTTTTAGGGGTTGATCTTGCAAAAGTTGCCATAATTGATAATACTCCACAGGTAGATTCTCTAGCCATTTTTAATGGCTTAGCCCTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

430

Amino Acids

47.98

Weight (kDa)

4.4

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	297 - 425	1.2e-41	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT5G46410 AT5G46410 AT5G46410
fragaria_vesca	FvH4_3g06370
malus_domestica	MD05G1291500.v1.1 MD10G1267500.v1.1
prunus_persica	Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1
pyrus_communis	pycom05g26800 pycom10g22350
rosa_chinensis	RchiOBHm_Chr5g0012931
rosa_laevigata	RLG00000031970
rosa_multiflora	Rmu_sc0006885.1_g000005
rosa_roxburghii	Rroxscaffold_1G00063650
rosa_rugosa	Rorug05G0005400
rosa_samantha	Rh5AG099600 Rh5BG096300 Rh5CG108500 Rh5DG094900
rosa_wichuraiana	Rw5G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	281
AccIII	TCCGGA	1 cut(s)	547
AciI	CCGC	3 cut(s)	161, 281, 294
AclI	AACGTT	1 cut(s)	1025
AclWI	GGATC	3 cut(s)	782, 1109, 1122
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	484
AfaI	GTAC	1 cut(s)	897
AfiI	CCNNNNNNNGG	2 cut(s)	503, 504
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	7 cut(s)	142, 171, 254, 347, 873, 976, 1055
AjnI	CCWGG	1 cut(s)	738
AleI	CACNNNNGTG	1 cut(s)	447
AluBI	AGCT	3 cut(s)	404, 492, 869
AluI	AGCT	3 cut(s)	404, 492, 869
Alw21I	GWGCWC	1 cut(s)	990
Alw26I	GTCTC	2 cut(s)	308, 721
AlwI	GGATC	3 cut(s)	782, 1109, 1122
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	2 cut(s)	58, 1010
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	866, 898
Asp700I	GAANNNNTTC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	218, 419
AxyI	CCTNAGG	1 cut(s)	861
BamHI	GGATCC	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	1 cut(s)	990
BccI	CCATC	3 cut(s)	13, 310, 1166
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	1 cut(s)	740
BciVI	GTATCC	2 cut(s)	679, 736
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	2 cut(s)	308, 721
BfaI	CTAG	3 cut(s)	617, 1259, 1288
BfuI	GTATCC	2 cut(s)	679, 736
BglII	AGATCT	1 cut(s)	119
BlpI	GCTNAGC	2 cut(s)	1092, 1276
Bme1390I	CCNGG	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	285, 1116
BmrFI	CCNGG	1 cut(s)	740
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	379, 499, 1092
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	627
BpmI	CTGGAG	1 cut(s)	722
Bpu1102I	GCTNAGC	2 cut(s)	1092, 1276
BsaBI	GATNNNNATC	2 cut(s)	690, 1119
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	1 cut(s)	1282
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 504
Bse1I	ACTGG	2 cut(s)	193, 921
Bse21I	CCTNAGG	1 cut(s)	861
Bse8I	GATNNNNATC	2 cut(s)	690, 1119
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	1 cut(s)	740
BseDI	CCNNGG	1 cut(s)	1282
BseGI	GGATG	3 cut(s)	44, 514, 913
BseJI	GATNNNNATC	2 cut(s)	690, 1119
BseLI	CCNNNNNNNGG	2 cut(s)	503, 504
BseMII	CTCAG	6 cut(s)	372, 582, 780, 807, 852, 1083
BseNI	ACTGG	2 cut(s)	193, 921
BshFI	GGCC	2 cut(s)	60, 1012
BsiHKAI	GWGCWC	1 cut(s)	990
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	503, 504
BsmAI	GTCTC	2 cut(s)	308, 721
BsmBI	CGTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	60, 1012
Bso31I	GGTCTC	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	990
Bsp13I	TCCGGA	1 cut(s)	547
Bsp143I	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
Bsp1720I	GCTNAGC	2 cut(s)	1092, 1276
BspACI	CCGC	3 cut(s)	161, 281, 294
BspANI	GGCC	2 cut(s)	60, 1012
BspCNI	CTCAG	6 cut(s)	373, 583, 779, 808, 853, 1084
BspEI	TCCGGA	1 cut(s)	547
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	2 cut(s)	285, 1116
BspPI	GGATC	3 cut(s)	782, 1109, 1122
BspTNI	GGTCTC	1 cut(s)	721
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	193, 921
BssECI	CCNNGG	1 cut(s)	1282
BssMI	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
BssT1I	CCWWGG	1 cut(s)	1282
Bst2UI	CCWGG	1 cut(s)	740
Bst4CI	ACNGT	6 cut(s)	413, 628, 748, 795, 967, 1198
Bst6I	CTCTTC	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	1223
BstC8I	GCNNGC	4 cut(s)	99, 298, 700, 1075
BstDEI	CTNAG	8 cut(s)	93, 381, 591, 766, 816, 861, 1092, 1276
BstF5I	GGATG	3 cut(s)	44, 514, 913
BstKTI	GATC	8 cut(s)	122, 442, 483, 694, 772, 790, 1117, 1213
BstMAI	GTCTC	2 cut(s)	308, 721
BstMBI	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
BstMWI	GCNNNNNNNGC	1 cut(s)	1223
BstNI	CCWGG	1 cut(s)	740
BstNSI	RCATGY	2 cut(s)	105, 604
BstSCI	CCNGG	1 cut(s)	738
BstV2I	GAAGAC	1 cut(s)	627
BstX2I	RGATCY	2 cut(s)	119, 1114
BstYI	RGATCY	2 cut(s)	119, 1114
Bsu36I	CCTNAGG	1 cut(s)	861
BsuI	GTATCC	2 cut(s)	679, 736
BsuRI	GGCC	2 cut(s)	60, 1012
BtsCI	GGATG	3 cut(s)	44, 514, 913
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	5 cut(s)	418, 508, 624, 914, 1068
Cac8I	GCNNGC	4 cut(s)	99, 298, 700, 1075
CciI	TCATGA	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	896
CviQI	GTAC	1 cut(s)	896
DdeI	CTNAG	8 cut(s)	93, 381, 591, 766, 816, 861, 1092, 1276
DpnI	GATC	8 cut(s)	121, 441, 482, 693, 771, 789, 1116, 1212
DpnII	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
DraI	TTTAAA	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco130I	CCWWGG	1 cut(s)	1282
Eco31I	GGTCTC	1 cut(s)	721
Eco57I	CTGAAG	1 cut(s)	484
Eco81I	CCTNAGG	1 cut(s)	861
EcoRII	CCWGG	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	1282
EcoT22I	ATGCAT	2 cut(s)	514, 1163
ErhI	CCWWGG	1 cut(s)	1282
Esp3I	CGTCTC	1 cut(s)	308
FauI	CCCGC	1 cut(s)	301
FbaI	TGATCA	1 cut(s)	480
FokI	GGATG	3 cut(s)	51, 521, 920
FspBI	CTAG	3 cut(s)	617, 1259, 1288
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	2 cut(s)	60, 1012
HapII	CCGG	1 cut(s)	548
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	7 cut(s)	236, 250, 263, 764, 947, 1154, 1253
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	218, 419
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188III	TCNNGA	7 cut(s)	218, 548, 617, 653, 671, 1103, 1151
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	5 cut(s)	13, 71, 298, 339, 508
HpyCH4III	ACNGT	6 cut(s)	413, 628, 748, 795, 967, 1198
HpyCH4IV	ACGT	1 cut(s)	1025
HpyCH4V	TGCA	5 cut(s)	392, 512, 1043, 1161, 1217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1223
HpyF3I	CTNAG	8 cut(s)	93, 381, 591, 766, 816, 861, 1092, 1276
HpySE526I	ACGT	1 cut(s)	1025
Kpn2I	TCCGGA	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
LmnI	GCTCC	2 cut(s)	401, 1033
LweI	GCATC	3 cut(s)	379, 499, 1092
MaeI	CTAG	3 cut(s)	617, 1259, 1288
MaeII	ACGT	1 cut(s)	1025
MaeIII	GTNAC	4 cut(s)	407, 434, 886, 1178
MalI	GATC	8 cut(s)	121, 441, 482, 693, 771, 789, 1116, 1212
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
MboII	GAAGA	5 cut(s)	127, 159, 242, 245, 632
MfeI	CAATTG	1 cut(s)	445
MflI	RGATCY	2 cut(s)	119, 1114
MhlI	GDGCHC	1 cut(s)	990
MluCI	AATT	9 cut(s)	213, 243, 445, 538, 640, 662, 714, 850, 1230
MlyI	GAGTC	1 cut(s)	758
MmeI	TCCRAC	1 cut(s)	293
MnlI	CCTC	4 cut(s)	746, 856, 1002, 1028
Mph1103I	ATGCAT	2 cut(s)	514, 1163
MroI	TCCGGA	1 cut(s)	547
MroXI	GAANNNNTTC	1 cut(s)	213
MseI	TTAA	4 cut(s)	11, 44, 753, 1269
MslI	CAYNNNNRTG	2 cut(s)	447, 942
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	740
MunI	CAATTG	1 cut(s)	445
MvaI	CCWGG	1 cut(s)	740
MwoI	GCNNNNNNNGC	1 cut(s)	1223
NdeII	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
NlaIV	GGNNCC	2 cut(s)	285, 1116
NmeAIII	GCCGAG	1 cut(s)	1166
NmuCI	GTSAC	2 cut(s)	407, 434
NsiI	ATGCAT	2 cut(s)	514, 1163
NspI	RCATGY	2 cut(s)	105, 604
OliI	CACNNNNGTG	1 cut(s)	447
PagI	TCATGA	1 cut(s)	217
PciI	ACATGT	1 cut(s)	600
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	6 cut(s)	236, 250, 263, 947, 1154, 1253
PflFI	GACNNNGTC	1 cut(s)	626
PfoI	TCCNGGA	1 cut(s)	738
PleI	GAGTC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	758
PscI	ACATGT	1 cut(s)	600
Psp1406I	AACGTT	1 cut(s)	1025
Psp6I	CCWGG	1 cut(s)	738
PspGI	CCWGG	1 cut(s)	738
PspN4I	GGNNCC	2 cut(s)	285, 1116
PsuI	RGATCY	2 cut(s)	119, 1114
PsyI	GACNNNGTC	1 cut(s)	626
RsaI	GTAC	1 cut(s)	897
RsaNI	GTAC	1 cut(s)	896
RseI	CAYNNNNRTG	2 cut(s)	447, 942
SaqAI	TTAA	4 cut(s)	11, 44, 753, 1269
Sau3AI	GATC	8 cut(s)	119, 439, 480, 691, 769, 787, 1114, 1210
SchI	GAGTC	1 cut(s)	758
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	1 cut(s)	990
SetI	ASST	7 cut(s)	406, 494, 817, 871, 1020, 1028, 1251
SfaNI	GCATC	3 cut(s)	379, 499, 1092
SmiMI	CAYNNNNRTG	2 cut(s)	447, 942
Sse9I	AATT	9 cut(s)	213, 243, 445, 538, 640, 662, 714, 850, 1230
SsiI	CCGC	3 cut(s)	161, 281, 294
SspMI	CTAG	3 cut(s)	617, 1259, 1288
StyD4I	CCNGG	1 cut(s)	738
StyI	CCWWGG	1 cut(s)	1282
TaaI	ACNGT	6 cut(s)	413, 628, 748, 795, 967, 1198
TaiI	ACGT	1 cut(s)	1028
TaqI	TCGA	3 cut(s)	488, 786, 836
TasI	AATT	9 cut(s)	213, 243, 445, 538, 640, 662, 714, 850, 1230
TatI	WGTACW	1 cut(s)	895
TfiI	GAWTC	6 cut(s)	236, 250, 263, 947, 1154, 1253
Tru1I	TTAA	4 cut(s)	11, 44, 753, 1269
Tru9I	TTAA	4 cut(s)	11, 44, 753, 1269
TscAI	CASTG	5 cut(s)	418, 508, 631, 921, 1075
TseFI	GTSAC	2 cut(s)	407, 434
Tsp45I	GTSAC	2 cut(s)	407, 434
TspDTI	ATGAA	8 cut(s)	32, 206, 243, 420, 818, 911, 924, 995
TspGWI	ACGGA	2 cut(s)	341, 1021
TspRI	CASTG	5 cut(s)	418, 508, 631, 921, 1075
Tth111I	GACNNNGTC	1 cut(s)	626
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	616
XceI	RCATGY	2 cut(s)	105, 604
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	3 cut(s)	617, 1259, 1288
Zsp2I	ATGCAT	2 cut(s)	514, 1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.