Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

341565 .. 343667

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0005400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTACGACGAGAAGAACAACCTGGTGATCATCCAAGTGGTCTGCTGCAGTCCTGAAAAGATCAGGGACAAGCTATGCTACAAAGGAGGTGGCGCCATTAAGAGCATCGAGATCAAAGTGCCCGAGAAGCCCAAGCCAAAGGAGCCGGAGAAGCCTAAAGATCAGAAACCCAAGGAGCCGGAGAAGCCTAAAGAGAAACCAAAGGAGCCGGAGAAGCCTAAAGAGCAACCAAAGGAGCCGGAGAAGCCTAAGGAGAAACCCAAAGAGCCCGAGAAACCTAAAGAGAAACCCAAAGAGCCCGAGAAGCCGAAGGTAGCTCCACCTGCGGTGATCGTTAACCCGTGTTGTATGGAATGTTACGGACGGCATCCTGGTGGTCCCTGCCAAACTGGGTATGGTTACGGTGGACCTGCCCCTTACATAGAGTACGATGGCTACTATGGAAGGCCGGTCTATGATAGTTACGGCGGTGGGAGGAACTATACTACTAGTTACTGCGTGACCCGCCCCGATTGTTTCAGTGAAGAAAATCCCCAAGCGTGCGCCATCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

184

Amino Acids

20.74

Weight (kDa)

8.54

Isoelectric Point (pI)

48.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	2 cut(s)	331, 418
AccB1I	GGYRCC	1 cut(s)	92
AciI	CCGC	3 cut(s)	326, 468, 505
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	5, 428
AhlI	ACTAGT	1 cut(s)	488
AjnI	CCWGG	2 cut(s)	21, 370
AluBI	AGCT	2 cut(s)	73, 317
AluI	AGCT	2 cut(s)	73, 317
Ama87I	CYCGRG	3 cut(s)	122, 269, 299
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	95, 545
AspS9I	GGNCC	2 cut(s)	377, 407
AsuHPI	GGTGA	2 cut(s)	37, 340
AvaI	CYCGRG	3 cut(s)	122, 269, 299
AvaII	GGWCC	2 cut(s)	377, 407
AxyI	CCTNAGG	1 cut(s)	249
BaeGI	GKGCMC	1 cut(s)	123
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	2 cut(s)	270, 300
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	2 cut(s)	425, 554
BceAI	ACGGC	2 cut(s)	380, 481
BciT130I	CCWGG	2 cut(s)	23, 372
BclI	TGATCA	1 cut(s)	27
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	1 cut(s)	489
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	96
BfuAI	ACCTGC	2 cut(s)	331, 418
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	2 cut(s)	23, 372
Bme18I	GGWCC	2 cut(s)	377, 407
BmeT110I	CYCGRG	3 cut(s)	122, 269, 299
BmgT120I	GGNCC	2 cut(s)	377, 407
BmiI	GGNNCC	6 cut(s)	94, 144, 177, 207, 237, 379
BmrFI	CCNGG	2 cut(s)	23, 372
BmrI	ACTGGG	1 cut(s)	399
BmsI	GCATC	2 cut(s)	114, 376
BmuI	ACTGGG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	1 cut(s)	171
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	23, 372
BseDI	CCNNGG	1 cut(s)	171
BseGI	GGATG	2 cut(s)	30, 367
BseNI	ACTGG	1 cut(s)	394
BseSI	GKGCMC	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	448
BshNI	GGYRCC	1 cut(s)	92
BsiHKCI	CYCGRG	3 cut(s)	122, 269, 299
BsiSI	CCGG	5 cut(s)	146, 179, 209, 239, 449
BslFI	GGGAC	2 cut(s)	80, 363
BsmFI	GGGAC	2 cut(s)	80, 363
BsnI	GGCC	1 cut(s)	448
BsoBI	CYCGRG	3 cut(s)	122, 269, 299
Bsp1286I	GDGCHC	3 cut(s)	123, 270, 300
Bsp143I	GATC	5 cut(s)	27, 60, 111, 160, 330
BspACI	CCGC	3 cut(s)	326, 468, 505
BspANI	GGCC	1 cut(s)	448
BspLI	GGNNCC	6 cut(s)	94, 144, 177, 207, 237, 379
BspMAI	CTGCAG	1 cut(s)	50
BspMI	ACCTGC	2 cut(s)	331, 418
BspT107I	GGYRCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	1 cut(s)	394
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	171
BssMI	GATC	5 cut(s)	27, 60, 111, 160, 330
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	171
Bst2UI	CCWGG	2 cut(s)	23, 372
Bst4CI	ACNGT	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	541
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	2 cut(s)	30, 367
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	2 cut(s)	95, 545
BstKTI	GATC	5 cut(s)	30, 63, 114, 163, 333
BstMBI	GATC	5 cut(s)	27, 60, 111, 160, 330
BstNI	CCWGG	2 cut(s)	23, 372
BstSCI	CCNGG	2 cut(s)	21, 370
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	32
Bsu36I	CCTNAGG	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	448
BtsCI	GGATG	2 cut(s)	30, 367
BtsIMutI	CAGTG	1 cut(s)	526
BveI	ACCTGC	2 cut(s)	331, 418
Cac8I	GCNNGC	1 cut(s)	541
CfoI	GCGC	2 cut(s)	95, 545
Cfr10I	RCCGGY	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	377, 407
CsiI	ACCWGGT	1 cut(s)	21
Csp6I	GTAC	2 cut(s)	4, 427
CspCI	CAANNNNNGTGG	2 cut(s)	70, 105
CviAII	CATG	1 cut(s)	550
CviQI	GTAC	2 cut(s)	4, 427
DdeI	CTNAG	1 cut(s)	249
DinI	GGCGCC	1 cut(s)	94
DpnI	GATC	5 cut(s)	29, 62, 113, 162, 332
DpnII	GATC	5 cut(s)	27, 60, 111, 160, 330
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	2 cut(s)	270, 300
Eco47I	GGWCC	2 cut(s)	377, 407
Eco81I	CCTNAGG	1 cut(s)	249
Eco88I	CYCGRG	3 cut(s)	122, 269, 299
EcoRII	CCWGG	2 cut(s)	21, 370
EcoT14I	CCWWGG	1 cut(s)	171
EcoT38I	GRGCYC	2 cut(s)	270, 300
EgeI	GGCGCC	1 cut(s)	94
EheI	GGCGCC	1 cut(s)	94
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	1 cut(s)	553
FaiI	YATR	8 cut(s)	76, 350, 396, 422, 441, 456, 483, 551
FaqI	GGGAC	2 cut(s)	80, 363
FatI	CATG	1 cut(s)	549
FauI	CCCGC	1 cut(s)	512
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	17, 354
FriOI	GRGCYC	2 cut(s)	270, 300
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	2 cut(s)	94, 544
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	5 cut(s)	146, 179, 209, 239, 449
HhaI	GCGC	2 cut(s)	95, 545
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	1 cut(s)	553
Hin6I	GCGC	2 cut(s)	93, 543
HinP1I	GCGC	2 cut(s)	93, 543
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HpaI	GTTAAC	1 cut(s)	337
HpaII	CCGG	5 cut(s)	146, 179, 209, 239, 449
HphI	GGTGA	2 cut(s)	37, 340
Hpy166II	GTNNAC	2 cut(s)	337, 407
Hpy188I	TCNGA	1 cut(s)	165
Hpy188III	TCNNGA	2 cut(s)	53, 109
Hpy8I	GTNNAC	2 cut(s)	337, 407
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	2 cut(s)	304, 438
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4V	TGCA	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	249
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	553
HspAI	GCGC	2 cut(s)	93, 543
KasI	GGCGCC	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	27, 60, 111, 160, 330
LmnI	GCTCC	5 cut(s)	142, 175, 205, 235, 322
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	2 cut(s)	114, 376
MabI	ACCWGGT	1 cut(s)	21
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	5 cut(s)	356, 398, 461, 491, 499
MalI	GATC	5 cut(s)	29, 62, 113, 162, 332
MboI	GATC	5 cut(s)	27, 60, 111, 160, 330
MboII	GAAGA	2 cut(s)	25, 536
MhlI	GDGCHC	3 cut(s)	123, 270, 300
Mly113I	GGCGCC	1 cut(s)	93
MnlI	CCTC	2 cut(s)	80, 468
MseI	TTAA	2 cut(s)	99, 336
MslI	CAYNNNNRTG	2 cut(s)	35, 372
MspI	CCGG	5 cut(s)	146, 179, 209, 239, 449
MspR9I	CCNGG	2 cut(s)	23, 372
MvaI	CCWGG	2 cut(s)	23, 372
NarI	GGCGCC	1 cut(s)	93
NdeII	GATC	5 cut(s)	27, 60, 111, 160, 330
NlaIII	CATG	1 cut(s)	553
NlaIV	GGNNCC	6 cut(s)	94, 144, 177, 207, 237, 379
NmuCI	GTSAC	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	47
PluTI	GGCGCC	1 cut(s)	96
Psp6I	CCWGG	2 cut(s)	21, 370
PspGI	CCWGG	2 cut(s)	21, 370
PspN4I	GGNNCC	6 cut(s)	94, 144, 177, 207, 237, 379
PspPI	GGNCC	2 cut(s)	377, 407
PstI	CTGCAG	1 cut(s)	50
RsaI	GTAC	2 cut(s)	5, 428
RsaNI	GTAC	2 cut(s)	4, 427
RseI	CAYNNNNRTG	2 cut(s)	35, 372
SaqAI	TTAA	2 cut(s)	99, 336
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	5 cut(s)	27, 60, 111, 160, 330
Sau96I	GGNCC	2 cut(s)	377, 407
ScrFI	CCNGG	2 cut(s)	23, 372
SduI	GDGCHC	3 cut(s)	123, 270, 300
SetI	ASST	8 cut(s)	24, 75, 91, 280, 315, 319, 325, 412
SexAI	ACCWGGT	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	114, 376
SfcI	CTRYAG	1 cut(s)	46
SfoI	GGCGCC	1 cut(s)	94
SinI	GGWCC	2 cut(s)	377, 407
SmiMI	CAYNNNNRTG	2 cut(s)	35, 372
SpeI	ACTAGT	1 cut(s)	488
SsiI	CCGC	3 cut(s)	326, 468, 505
SspDI	GGCGCC	1 cut(s)	92
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	2 cut(s)	21, 370
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	1 cut(s)	404
TaqI	TCGA	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	99, 336
Tru9I	TTAA	2 cut(s)	99, 336
TscAI	CASTG	1 cut(s)	526
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	1 cut(s)	45
Tsp45I	GTSAC	1 cut(s)	499
TspGWI	ACGGA	1 cut(s)	375
TspRI	CASTG	1 cut(s)	526
VpaK11BI	GGWCC	2 cut(s)	377, 407
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.