Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014141.1

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2956

Gene Structure 2956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014141.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 884 bp

gtgggaagaagaaggaggtgaagaaagaaaccggcctcggtttgaccaagaagaaggatgagaatttcggggagtggtattcggaggttgttgttttcggtgagatgattgaatactatgacatatctggttgttatattttgaggccatggacaatggcaatatgggagaccatgcaagcattcttcgatgcagaaataaagaaaatgaagattaaaaattgctactttcctttgttcgtctcccctgctgttctggaaaaagagaaggatcatatagagggttttgctccagaggttgcttgggtcacaaagtctggaaaatctgaattggaagtgcctattgctatccgtccaacgagtgagactgttatgtatccttattactcgaagtggattaggggacaccgtgacttaccattgaagttaaatcagtggtgcaatgtagttcgatgggagtttagcaatcccactccatttatcaggagtcgggagtttctttggcaagaaggccatacagcttttgcaacaaaggaagaggcagataaagaggtccttgagatattggaactgtacagaaggatatatgaagaatacttggcaattccagttgtgaagggaaagaagagtgagaatgagaaatttgctggtggtctttacaccacaagtgtggaggcttttgttccaaatactggccgcggtgtacaaggcgccacttcacattgtctgggtcaaaattttgctaaaatgttcgacatcacttttgaaaatgaaaagggagaaaaagcaatgatttggcaaaactcttgggcttatagtactcgaacggtaacttcctttgcttttattttcttgtttgaaatcttgtttcagattccagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

293

Amino Acids

34.12

Weight (kDa)

6.22

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	709
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccII	CGCG	1 cut(s)	698
AciI	CCGC	2 cut(s)	696, 698
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	693
AcsI	RAATTY	3 cut(s)	63, 640, 735
AcyI	GRCGYC	1 cut(s)	710
AfaI	GTAC	3 cut(s)	574, 704, 819
AfiI	CCNNNNNNNGG	1 cut(s)	691
AgsI	TTSAA	4 cut(s)	112, 423, 766, 859
AleI	CACNNNNGTG	1 cut(s)	667
AluBI	AGCT	1 cut(s)	520
AluI	AGCT	1 cut(s)	520
Alw26I	GTCTC	3 cut(s)	163, 246, 358
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	4 cut(s)	33, 145, 510, 693
ApoI	RAATTY	3 cut(s)	63, 640, 735
ArsI	GACNNNNNNTTYG	2 cut(s)	745, 777
AspLEI	GCGC	1 cut(s)	712
AspS9I	GGNCC	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	30, 112
AvaII	GGWCC	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	709
BccI	CCATC	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	3 cut(s)	163, 246, 358
BfoI	RGCGCY	1 cut(s)	713
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
BmcAI	AGTACT	1 cut(s)	819
Bme18I	GGWCC	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	1 cut(s)	711
BmsI	GCATC	1 cut(s)	180
BpmI	CTGGAG	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	710
BsaI	GGTCTC	1 cut(s)	163
BsaJI	CCNNGG	3 cut(s)	36, 148, 696
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse118I	RCCGGY	1 cut(s)	31
Bse1I	ACTGG	3 cut(s)	607, 696, 877
Bse3DI	GCAATG	2 cut(s)	447, 794
BseDI	CCNNGG	3 cut(s)	36, 148, 696
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMI	GCAATG	2 cut(s)	447, 794
BseNI	ACTGG	3 cut(s)	607, 696, 877
Bsh1236I	CGCG	1 cut(s)	698
BshFI	GGCC	4 cut(s)	35, 147, 512, 695
BshNI	GGYRCC	1 cut(s)	709
BsiSI	CCGG	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	3 cut(s)	163, 246, 358
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	4 cut(s)	35, 147, 512, 695
Bso31I	GGTCTC	1 cut(s)	163
Bsp1407I	TGTACA	2 cut(s)	572, 702
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	2 cut(s)	696, 698
BspANI	GGCC	4 cut(s)	35, 147, 512, 695
BspFNI	CGCG	1 cut(s)	698
BspLI	GGNNCC	1 cut(s)	711
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	709
BspTNI	GGTCTC	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	447, 794
BsrFI	RCCGGY	1 cut(s)	31
BsrGI	TGTACA	2 cut(s)	572, 702
BsrI	ACTGG	3 cut(s)	607, 696, 877
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	3 cut(s)	36, 148, 696
BssMI	GATC	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	710
BssT1I	CCWWGG	1 cut(s)	148
Bst4CI	ACNGT	4 cut(s)	369, 409, 572, 828
Bst6I	CTCTTC	2 cut(s)	530, 619
BstACI	GRCGYC	1 cut(s)	710
BstAUI	TGTACA	2 cut(s)	572, 702
BstC8I	GCNNGC	1 cut(s)	179
BstDSI	CCRYGG	2 cut(s)	148, 696
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	698
BstH2I	RGCGCY	1 cut(s)	713
BstHHI	GCGC	1 cut(s)	712
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	3 cut(s)	163, 246, 358
BstMBI	GATC	1 cut(s)	270
BstUI	CGCG	1 cut(s)	698
BstXI	CCANNNNNNTGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	4 cut(s)	35, 147, 512, 695
BtgI	CCRYGG	2 cut(s)	148, 696
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	179
CfoI	GCGC	1 cut(s)	712
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	552
Cfr42I	CCGCGG	1 cut(s)	699
Csp6I	GTAC	3 cut(s)	573, 703, 818
CviAII	CATG	2 cut(s)	149, 174
CviJI	RGCY	7 cut(s)	35, 147, 512, 520, 676, 695, 811
CviKI_1	RGCY	7 cut(s)	35, 147, 512, 520, 676, 695, 811
CviQI	GTAC	3 cut(s)	573, 703, 818
DinI	GGCGCC	1 cut(s)	711
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	693
Eam1104I	CTCTTC	2 cut(s)	530, 619
EarI	CTCTTC	2 cut(s)	530, 619
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	163
Eco47I	GGWCC	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	148
EgeI	GGCGCC	1 cut(s)	711
EheI	GGCGCC	1 cut(s)	711
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	2 cut(s)	152, 177
FalI	AAGNNNNNCTT	2 cut(s)	539, 571
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	2 cut(s)	148, 173
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	1 cut(s)	696
GlaI	GCGC	1 cut(s)	711
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	713
HaeIII	GGCC	4 cut(s)	35, 147, 512, 695
HapII	CCGG	1 cut(s)	32
HhaI	GCGC	1 cut(s)	712
Hin1I	GRCGYC	1 cut(s)	710
Hin1II	CATG	2 cut(s)	152, 177
Hin6I	GCGC	1 cut(s)	710
HinP1I	GCGC	1 cut(s)	710
HinfI	GANTC	2 cut(s)	486, 873
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	30, 112
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	3 cut(s)	84, 327, 872
Hpy188III	TCNNGA	5 cut(s)	256, 292, 317, 483, 490
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	6 cut(s)	6, 48, 261, 502, 572, 609
HpyCH4III	ACNGT	4 cut(s)	369, 409, 572, 828
HpyCH4V	TGCA	4 cut(s)	177, 193, 440, 526
Hsp92I	GRCGYC	1 cut(s)	710
Hsp92II	CATG	2 cut(s)	152, 177
HspAI	GCGC	1 cut(s)	710
KasI	GGCGCC	1 cut(s)	709
KspI	CCGCGG	1 cut(s)	699
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	294
LweI	GCATC	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	306, 409, 828
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	9 cut(s)	18, 21, 33, 63, 177, 222, 547, 601, 636
MluCI	AATT	6 cut(s)	63, 219, 328, 602, 640, 735
Mly113I	GGCGCC	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	495
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	9 cut(s)	9, 46, 78, 137, 273, 288, 531, 543, 666
MseI	TTAA	2 cut(s)	215, 427
MslI	CAYNNNNRTG	1 cut(s)	667
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	181
MvnI	CGCG	1 cut(s)	698
NarI	GGCGCC	1 cut(s)	710
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	2 cut(s)	152, 177
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	2 cut(s)	306, 409
OliI	CACNNNNGTG	1 cut(s)	667
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	873
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	494
PluTI	GGCGCC	1 cut(s)	713
PpsI	GAGTC	1 cut(s)	494
PpuMI	RGGWCCY	1 cut(s)	552
Psp5II	RGGWCCY	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	552
PspPPI	RGGWCCY	1 cut(s)	552
RsaI	GTAC	3 cut(s)	574, 704, 819
RsaNI	GTAC	3 cut(s)	573, 703, 818
RseI	CAYNNNNRTG	1 cut(s)	667
SacII	CCGCGG	1 cut(s)	699
SaqAI	TTAA	2 cut(s)	215, 427
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	552
ScaI	AGTACT	1 cut(s)	819
SchI	GAGTC	1 cut(s)	495
SetI	ASST	5 cut(s)	20, 89, 299, 522, 554
SfaNI	GCATC	1 cut(s)	180
SfoI	GGCGCC	1 cut(s)	711
Sfr303I	CCGCGG	1 cut(s)	699
SgrBI	CCGCGG	1 cut(s)	699
SinI	GGWCC	1 cut(s)	552
SmiMI	CAYNNNNRTG	1 cut(s)	667
SmlI	CTYRAG	1 cut(s)	556
SmoI	CTYRAG	1 cut(s)	556
Sse9I	AATT	6 cut(s)	63, 219, 328, 602, 640, 735
SsiI	CCGC	2 cut(s)	696, 698
SspDI	GGCGCC	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	4 cut(s)	369, 409, 572, 828
TaqI	TCGA	5 cut(s)	188, 388, 450, 752, 822
TasI	AATT	6 cut(s)	63, 219, 328, 602, 640, 735
TatI	WGTACW	3 cut(s)	572, 702, 817
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	873
Tru1I	TTAA	2 cut(s)	215, 427
Tru9I	TTAA	2 cut(s)	215, 427
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	2 cut(s)	306, 409
Tsp45I	GTSAC	2 cut(s)	306, 409
TspDTI	ATGAA	3 cut(s)	223, 602, 785
TspGWI	ACGGA	1 cut(s)	340
TspRI	CASTG	1 cut(s)	439
Van91I	CCANNNNNTGG	1 cut(s)	691
VpaK11BI	GGWCC	1 cut(s)	552
XapI	RAATTY	3 cut(s)	63, 640, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	819

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.