Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

84402323 .. 84403024

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG611700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGATTTGGCAAAACTCTTGGGCTTATAGTACTCGAACGATTGGAGTGATGGTAATGGTGCATGGAGATGACAAAGGCTTGGTATTGCCACCAAATGTAGCATCTATCCAGGCCATTGTGATTCCAGTGCCTTTCAAGGACGCTGATACACAAGCCATATTTGATGCCTGCTCGAAAACTGTGGAGGAGTTGAGTGAAGCTGGATTTCGTGTTGAGGCTGATTTGAGGGACAACTACTCGCCTGAATGGAAGCATTCACACTGGGAATTGAAAGGTGTTCCTCTAAGGATTGAAATTGGACTAAAGGATTTGGAGAAGAAACAAGTAAGCTGTGTTCGGCGTGACAACTCTGCGAAAGGGGACATTCCTATAGTGAACTTGGTCAAGGAAGTGAAAGACATGCTTGATAAAATTCAACAAAATCTCTTTGATGTTGCAAAACAAAAACGAGATGCTTCTGTCCAGGTTGCCAGAACATGGGATGAATTCACGGTAGCCTTGAGCGACAAGAAATTGATCCTGGCTCCTTGGTGTGACGAACAGGAAGTAGAAGAGGATGTCAAAGCGAGAACAAAGGGTGAAATTGGAGCAGCAACGTCACTCTGCTCGCCCTTTGACCAGCCCCAACTCCCTGAAGGGACGCTTTGCTTTGCATCCGGAAAGCCAGCAAAAAAGTGGACCTACCGGGGGAGGAGCTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

233

Amino Acids

26.21

Weight (kDa)

5.74

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	37 - 133	7.5e-22	Anticodon binding domain
ProRS-C_1	PF09180	160 - 233	1.9e-23	Prolyl-tRNA synthetase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	477
AccIII	TCCGGA	1 cut(s)	656
AclWI	GGATC	1 cut(s)	511
AcsI	RAATTY	2 cut(s)	411, 485
AcuI	CTGAAG	1 cut(s)	654
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	477, 687
AgsI	TTSAA	4 cut(s)	136, 271, 293, 416
AjnI	CCWGG	3 cut(s)	108, 462, 519
AluBI	AGCT	3 cut(s)	200, 330, 696
AluI	AGCT	3 cut(s)	200, 330, 696
AlwI	GGATC	1 cut(s)	511
Aor13HI	TCCGGA	1 cut(s)	656
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	1 cut(s)	590
ApoI	RAATTY	2 cut(s)	411, 485
AspS9I	GGNCC	1 cut(s)	678
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	590
AvaII	GGWCC	1 cut(s)	678
BbvI	GCAGC	1 cut(s)	602
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	110, 464, 521
BcnI	CCSGG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	591
BlsI	GCNGC	1 cut(s)	592
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	4 cut(s)	110, 464, 521, 686
Bme18I	GGWCC	1 cut(s)	678
BmgT120I	GGNCC	1 cut(s)	678
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	4 cut(s)	110, 464, 521, 686
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	4 cut(s)	110, 154, 442, 662
BmuI	ACTGGG	1 cut(s)	271
BpuEI	CTTGAG	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	686
BsaJI	CCNNGG	2 cut(s)	527, 685
BsaWI	WCCGGW	1 cut(s)	656
BsaXI	ACNNNNNCTCC	2 cut(s)	36, 66
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 687
Bse1I	ACTGG	2 cut(s)	125, 266
BseAI	TCCGGA	1 cut(s)	656
BseBI	CCWGG	3 cut(s)	110, 464, 521
BseDI	CCNNGG	2 cut(s)	527, 685
BseGI	GGATG	3 cut(s)	487, 562, 653
BseLI	CCNNNNNNNGG	2 cut(s)	477, 687
BseNI	ACTGG	2 cut(s)	125, 266
BseRI	GAGGAG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	602
BshFI	GGCC	1 cut(s)	113
BsiSI	CCGG	2 cut(s)	657, 685
BslFI	GGGAC	3 cut(s)	242, 374, 652
BslI	CCNNNNNNNGG	2 cut(s)	477, 687
BsmFI	GGGAC	3 cut(s)	242, 374, 652
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	113
Bsp13I	TCCGGA	1 cut(s)	656
Bsp143I	GATC	1 cut(s)	516
BspANI	GGCC	1 cut(s)	113
BspEI	TCCGGA	1 cut(s)	656
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	125, 266
BssECI	CCNNGG	2 cut(s)	527, 685
BssMI	GATC	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	527
Bst2UI	CCWGG	3 cut(s)	110, 464, 521
Bst4CI	ACNGT	2 cut(s)	181, 493
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	3 cut(s)	169, 608, 666
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	3 cut(s)	487, 562, 653
BstKTI	GATC	1 cut(s)	519
BstMBI	GATC	1 cut(s)	516
BstNI	CCWGG	3 cut(s)	110, 464, 521
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	4 cut(s)	108, 462, 519, 684
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	602
BsuRI	GGCC	1 cut(s)	113
BtsCI	GGATG	3 cut(s)	487, 562, 653
BtsIMutI	CAGTG	2 cut(s)	132, 259
Cac8I	GCNNGC	3 cut(s)	169, 608, 666
Cfr13I	GGNCC	1 cut(s)	678
CseI	GACGC	2 cut(s)	149, 649
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	3 cut(s)	62, 400, 477
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	1 cut(s)	518
DpnII	GATC	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	678
Eco57I	CTGAAG	1 cut(s)	654
EcoRI	GAATTC	1 cut(s)	485
EcoRII	CCWGG	3 cut(s)	108, 462, 519
EcoT14I	CCWWGG	1 cut(s)	527
ErhI	CCWWGG	1 cut(s)	527
FaeI	CATG	3 cut(s)	65, 403, 480
FaiI	YATR	6 cut(s)	27, 63, 158, 371, 401, 478
FalI	AAGNNNNNCTT	4 cut(s)	387, 419, 627, 659
FaqI	GGGAC	3 cut(s)	242, 374, 652
FatI	CATG	3 cut(s)	61, 399, 476
Fnu4HI	GCNGC	1 cut(s)	591
FokI	GGATG	3 cut(s)	494, 569, 640
Fsp4HI	GCNGC	1 cut(s)	591
GluI	GCNGC	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	657, 685
HgaI	GACGC	2 cut(s)	149, 649
Hin1II	CATG	3 cut(s)	65, 403, 480
HinfI	GANTC	1 cut(s)	121
HpaII	CCGG	2 cut(s)	657, 685
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	376, 678
Hpy188III	TCNNGA	1 cut(s)	657
Hpy8I	GTNNAC	2 cut(s)	376, 678
HpyAV	CCTTC	1 cut(s)	629
HpyCH4III	ACNGT	2 cut(s)	181, 493
HpyCH4IV	ACGT	1 cut(s)	596
HpyCH4V	TGCA	3 cut(s)	61, 437, 653
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	596
Hsp92II	CATG	3 cut(s)	65, 403, 480
Kpn2I	TCCGGA	1 cut(s)	656
Kzo9I	GATC	1 cut(s)	516
LmnI	GCTCC	3 cut(s)	529, 587, 693
Lsp1109I	GCAGC	1 cut(s)	602
LweI	GCATC	4 cut(s)	110, 154, 442, 662
MaeII	ACGT	1 cut(s)	596
MaeIII	GTNAC	3 cut(s)	341, 533, 597
MalI	GATC	1 cut(s)	518
MboI	GATC	1 cut(s)	516
MboII	GAAGA	2 cut(s)	328, 563
MluCI	AATT	6 cut(s)	266, 294, 411, 485, 512, 582
MnlI	CCTC	6 cut(s)	178, 208, 219, 291, 547, 684
MroI	TCCGGA	1 cut(s)	656
MslI	CAYNNNNRTG	1 cut(s)	66
MspI	CCGG	2 cut(s)	657, 685
MspR9I	CCNGG	4 cut(s)	110, 464, 521, 686
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	3 cut(s)	110, 464, 521
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	1 cut(s)	516
NlaIII	CATG	3 cut(s)	65, 403, 480
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	3 cut(s)	341, 533, 597
NspI	RCATGY	1 cut(s)	403
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	121
PflMI	CCANNNNNTGG	1 cut(s)	477
PkrI	GCNGC	1 cut(s)	592
Psp6I	CCWGG	3 cut(s)	108, 462, 519
PspGI	CCWGG	3 cut(s)	108, 462, 519
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	678
PsrI	GAACNNNNNNTAC	2 cut(s)	318, 350
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	66
SatI	GCNGC	1 cut(s)	591
Sau3AI	GATC	1 cut(s)	516
Sau96I	GGNCC	1 cut(s)	678
ScaI	AGTACT	1 cut(s)	31
ScrFI	CCNGG	4 cut(s)	110, 464, 521, 686
SetI	ASST	7 cut(s)	202, 277, 332, 468, 599, 683, 698
SfaNI	GCATC	4 cut(s)	110, 154, 442, 662
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	678
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	499
SmoI	CTYRAG	1 cut(s)	499
Sse9I	AATT	6 cut(s)	266, 294, 411, 485, 512, 582
StyD4I	CCNGG	4 cut(s)	108, 462, 519, 684
StyI	CCWWGG	1 cut(s)	527
TaaI	ACNGT	2 cut(s)	181, 493
TaiI	ACGT	1 cut(s)	599
TaqI	TCGA	2 cut(s)	34, 173
TasI	AATT	6 cut(s)	266, 294, 411, 485, 512, 582
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	1 cut(s)	121
TscAI	CASTG	2 cut(s)	132, 266
TseFI	GTSAC	3 cut(s)	341, 533, 597
TseI	GCWGC	1 cut(s)	590
Tsp45I	GTSAC	3 cut(s)	341, 533, 597
TspDTI	ATGAA	1 cut(s)	498
TspRI	CASTG	2 cut(s)	132, 266
Van91I	CCANNNNNTGG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	678
XapI	RAATTY	2 cut(s)	411, 485
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	672
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.