FvH4_2g20861

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
17422147 .. 17422897
751 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20861.t1

Sequence Viewer

Length: 444 bp
ATGAAAGGTGTTCCTCTGAGGATTGAAATTGGACAGAGGGATTTGGACAAGAATCAAGTGCGCATTGTTCGGCGGGACAATTCAGAAAAAGTGGACATTCCTCTGAACAATGATTTGGTTGAGCGAGTAAAGAACACAATGGATAGAATTCAGCAAAATATGTTTGATGTAGCAAGGAGAAAACGAGATGCATGTATCCAAGTTGCAAGGACATGGGACGAGTTTATGGAAGTTCTAAACCAGAAGAAAATGATCTTGGCTCCTTGGTGTGATGAAATGGATGTGGAAGAGGAAGTGAAAAAACGAACCAAGGGTGAAGGTGAAATGGGAGCAGCTAAGTCTCTCTGCACCCCATTTGAGCAGCCTGAACTTCCTGAAGGGACACTTTGCTTTGCCTCCGGAAAGCCCGCAAGGAAGTGGACCTATTGGGGCAGGACTTACTAG

Protein Analysis

148

Amino Acids

17.21

Weight (kDa)

8.34

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HGTP_anticodon PF03129 1 - 44 8.9e-07 Anticodon binding domain
ProRS-C_1 PF09180 72 - 147 6.7e-26 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 398
AciI CCGC 2 cut(s) 73, 408
AcsI RAATTY 1 cut(s) 147
AcuI CTGAAG 1 cut(s) 396
AgsI TTSAA 1 cut(s) 26
AjuI GAANNNNNNNTTGG 4 cut(s) 98, 130, 239, 271
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
Alw26I GTCTC 1 cut(s) 345
Aor13HI TCCGGA 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 332, 361
ApoI RAATTY 1 cut(s) 147
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 420
AsuHPI GGTGA 2 cut(s) 326, 332
AvaII GGWCC 1 cut(s) 420
BbvI GCAGC 2 cut(s) 344, 373
BciVI GTATCC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 206
BisI GCNGC 2 cut(s) 333, 362
BlsI GCNGC 2 cut(s) 334, 363
Bme18I GGWCC 1 cut(s) 420
BmgT120I GGNCC 1 cut(s) 420
BmiI GGNNCC 1 cut(s) 261
BmsI GCATC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 263, 309
BsaWI WCCGGW 1 cut(s) 398
BseAI TCCGGA 1 cut(s) 398
BseDI CCNNGG 2 cut(s) 263, 309
BseGI GGATG 1 cut(s) 286
BseMII CTCAG 1 cut(s) 8
BseXI GCAGC 2 cut(s) 344, 373
BsgI GTGCAG 1 cut(s) 331
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 3 cut(s) 89, 230, 394
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 3 cut(s) 89, 230, 394
Bsp13I TCCGGA 1 cut(s) 398
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 73, 408
BspCNI CTCAG 1 cut(s) 9
BspEI TCCGGA 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 261
BssECI CCNNGG 2 cut(s) 263, 309
BssMI GATC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 263, 309
Bst6I CTCTTC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 17, 336
BstF5I GGATG 1 cut(s) 286
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 195
BstV1I GCAGC 2 cut(s) 344, 373
BsuI GTATCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 286
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 420
CviAII CATG 2 cut(s) 192, 213
CviJI RGCY 4 cut(s) 260, 335, 364, 406
CviKI_1 RGCY 4 cut(s) 260, 335, 364, 406
DdeI CTNAG 2 cut(s) 17, 336
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco130I CCWWGG 2 cut(s) 263, 309
Eco47I GGWCC 1 cut(s) 420
Eco57I CTGAAG 1 cut(s) 396
EcoRI GAATTC 1 cut(s) 147
EcoT14I CCWWGG 2 cut(s) 263, 309
EcoT22I ATGCAT 1 cut(s) 193
ErhI CCWWGG 2 cut(s) 263, 309
FaeI CATG 2 cut(s) 195, 216
FaiI YATR 4 cut(s) 161, 193, 214, 227
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FaqI GGGAC 3 cut(s) 89, 230, 394
FatI CATG 2 cut(s) 191, 212
FauI CCCGC 2 cut(s) 66, 415
Fnu4HI GCNGC 2 cut(s) 333, 362
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 2 cut(s) 333, 362
FspAI RTGCGCAY 1 cut(s) 62
FspBI CTAG 1 cut(s) 442
FspI TGCGCA 1 cut(s) 62
GlaI GCGC 1 cut(s) 62
GluI GCNGC 2 cut(s) 333, 362
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 63
Hin1II CATG 2 cut(s) 195, 216
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 1 cut(s) 52
HpaII CCGG 1 cut(s) 399
HphI GGTGA 2 cut(s) 326, 332
Hpy166II GTNNAC 2 cut(s) 94, 420
Hpy188I TCNGA 3 cut(s) 18, 85, 105
Hpy188III TCNNGA 2 cut(s) 374, 399
Hpy8I GTNNAC 2 cut(s) 94, 420
HpyAV CCTTC 2 cut(s) 311, 371
HpyCH4V TGCA 3 cut(s) 191, 206, 348
HpyF3I CTNAG 2 cut(s) 17, 336
Hsp92II CATG 2 cut(s) 195, 216
HspAI GCGC 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 398
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 2 cut(s) 265, 329
LpnPI CCDG 5 cut(s) 254, 378, 387, 412, 418
Lsp1109I GCAGC 2 cut(s) 344, 373
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 442
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 256, 299
MluCI AATT 3 cut(s) 27, 79, 147
MnlI CCTC 6 cut(s) 12, 24, 30, 111, 283, 406
Mph1103I ATGCAT 1 cut(s) 193
MroI TCCGGA 1 cut(s) 398
MspI CCGG 1 cut(s) 399
NdeII GATC 1 cut(s) 252
NlaIII CATG 2 cut(s) 195, 216
NlaIV GGNNCC 1 cut(s) 261
NsbI TGCGCA 1 cut(s) 62
NsiI ATGCAT 1 cut(s) 193
NspI RCATGY 1 cut(s) 195
PfeI GAWTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 334, 363
PspN4I GGNNCC 1 cut(s) 261
PspPI GGNCC 1 cut(s) 420
SatI GCNGC 2 cut(s) 333, 362
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 420
SetI ASST 4 cut(s) 10, 322, 337, 425
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 1 cut(s) 420
Sse9I AATT 3 cut(s) 27, 79, 147
SsiI CCGC 2 cut(s) 73, 408
SspMI CTAG 1 cut(s) 442
StyI CCWWGG 2 cut(s) 263, 309
TasI AATT 3 cut(s) 27, 79, 147
TfiI GAWTC 1 cut(s) 52
TseI GCWGC 2 cut(s) 332, 361
TspDTI ATGAA 2 cut(s) 17, 288
VpaK11BI GGWCC 1 cut(s) 420
XapI RAATTY 1 cut(s) 147
XceI RCATGY 1 cut(s) 195
XspI CTAG 1 cut(s) 442
Zsp2I ATGCAT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.