Prupe.1G103500_v2.0.a1

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
8261455 .. 8267124
5670 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G103500.1

Sequence Viewer

Length: 1530 bp
ATGGCCGATGCCGGTGCTAAGAAGTCTAACACCGATGCCGGAGGGAAAAAGAAGGAGGTGAAGAAAGAAACTGGCCTCGGTCTTTCCAAAAAGAAGGATGAGAATTTTGGAGAGTGGTATTCTGAGGTTGTTGTTCATAGTGAGATGATTGAATACTATGATATCTCCGGTTGTTATATTTTAAGGCCATGGACGATGTCAATATGGGAGACGATGCAAGCATTCTTCGATGCAGAAATAAAGAGAATGAAGGTAAAAAATACCTATTTCCCTTTGTTTGTCTCCCCAGGTGTTCTGGAAAAAGAGAAGGATCATGTAGAGGGTTTTGCTCCAGAGGTTGCTTGGGTCACAAAGTCTGGAAAATCTGAATTGGAAGTGCCAATAGCAATACGTCCAACAAGTGAGACTGTTATGTATCCTTATTTCTCTAAGTGGATCAGAGGACACCGTGACTTACCTTTGAAGCTAAATCAATGGTGTAATGTTGTTCGATGGGAGTTCAGCAATCCTACACCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCATACAGCTTTCGCAACACAGGCGGAGGCAGATGAAGAAGTTCTTGAGATATTGGAATTATACAGAAGGATATATGAGGAATATTTGGCAATTCCAGTTGTGAAGGGAAAGAAGAGTGAGCTTGAGAAATTTGCTGGTGGCCTTTACACTACAAGTGTGGAGGCTTTTATTCCAAATACTGGCCGCGGTGTACAAGGTGCTACCTCGCATTGTTTGGGTCAAAATTTTGCTAAAATGTTTGGGATAGAGTTTGAAAATGAAAAAGGTGGAAAGGCCATGGTTTGGCAAAACTCTTGGGCATATAGCACTCGAACGATTGGAGTGATGGTGATGGTTCATGGAGATGACAAAGGCTTGGTATTGCCACCTAAAGTGGCAGCTACCCAGGTTATTGTGGTTCCAGTGCCTTACAAGGATACTAATACAAAAGAAATGTTTGAAGCTTGCTTGAGAACTGTGGATACCTTGACCGAAGCAGGATTTCGTGTTGAGGCAGATTTAAGGGACAACTATGGTCCAGGTTGGAAGTATTCACATTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATTGGACCACGGGATTTGGAAAAAAAACAAGTACGCCTGGCCCGCCGTGACAATTCAGATAAACTGGACATTCCTGTGAGCAATTTGGTTGAGCAAGTAAAAGATATCTTGGATAGAATTCAGGAAAATCTGTTTGAGGTGGCAAAACAAAAGCGAGATGCTTCTATCAGGGTTGCAAAGACATGGGATGAATTTATGGAAGCTCTAAACCAAAAGAAAATGATCTTGGCTCCTTGGTGTGACGAAATGGAAGTAGAGGAGGATGTGAAAAAACGAACGAAGGGTGAAATTGGAGCAGCCAAGTCACTCTGCACCCCATTCGAGCAGCCTGAACTTCCCGAAGGGACACTTTGCTTTGCCTCCGGAAAGCCAGCAAAGAAGTGGACTTACTGGGGCAGGAGTTACTAG

Protein Analysis

510

Amino Acids

58.26

Weight (kDa)

6.29

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 731, 834
AccII CGCG 1 cut(s) 738
AccIII TCCGGA 1 cut(s) 1484
AciI CCGC 4 cut(s) 575, 736, 738, 1165
AclWI GGATC 2 cut(s) 318, 443
AcoI YGGCCR 2 cut(s) 3, 733
AcsI RAATTY 5 cut(s) 103, 680, 775, 1239, 1313
AfaI GTAC 2 cut(s) 744, 1155
AfiI CCNNNNNNNGG 2 cut(s) 731, 834
AgsI TTSAA 5 cut(s) 152, 463, 806, 992, 1121
AjnI CCWGG 4 cut(s) 286, 936, 1069, 1158
AjuI GAANNNNNNNTTGG 2 cut(s) 1331, 1363
AluBI AGCT 6 cut(s) 466, 560, 673, 932, 995, 1325
AluI AGCT 6 cut(s) 466, 560, 673, 932, 995, 1325
Alw26I GTCTC 3 cut(s) 203, 286, 398
AlwI GGATC 2 cut(s) 318, 443
Aor13HI TCCGGA 1 cut(s) 1484
AoxI GGCC 8 cut(s) 3, 73, 185, 550, 691, 733, 825, 1161
ApeKI GCWGC 3 cut(s) 929, 1418, 1447
ApoI RAATTY 5 cut(s) 103, 680, 775, 1239, 1313
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 1067, 1127, 1162
AsuHPI GGTGA 3 cut(s) 70, 892, 1418
AvaII GGWCC 2 cut(s) 1067, 1127
BarI GAAGNNNNNNTAC 2 cut(s) 1493, 1525
BbvI GCAGC 3 cut(s) 941, 1430, 1459
BccI CCATC 3 cut(s) 486, 871, 877
BceAI ACGGC 1 cut(s) 1152
BcgI CGANNNNNNTGC 3 cut(s) 30, 1423, 1457
BciT130I CCWGG 4 cut(s) 288, 938, 1071, 1160
BciVI GTATCC 3 cut(s) 426, 961, 1006
BcoDI GTCTC 3 cut(s) 203, 286, 398
BfaI CTAG 1 cut(s) 1528
BfuI GTATCC 3 cut(s) 426, 961, 1006
BisI GCNGC 4 cut(s) 736, 930, 1419, 1448
BlsI GCNGC 4 cut(s) 737, 931, 1420, 1449
Bme1390I CCNGG 4 cut(s) 288, 938, 1071, 1160
Bme18I GGWCC 2 cut(s) 1067, 1127
BmgT120I GGNCC 3 cut(s) 1067, 1127, 1162
BmiI GGNNCC 2 cut(s) 951, 1353
BmrFI CCNGG 4 cut(s) 288, 938, 1071, 1160
BmrI ACTGGG 1 cut(s) 1522
BmsI GCATC 4 cut(s) 25, 204, 220, 1270
BmuI ACTGGG 1 cut(s) 1522
BpmI CTGGAG 1 cut(s) 315
BpuEI CTTGAG 3 cut(s) 617, 695, 1021
BsaJI CCNNGG 8 cut(s) 76, 188, 286, 736, 828, 936, 1130, 1355
BsaWI WCCGGW 2 cut(s) 167, 1484
BsaXI ACNNNNNCTCC 2 cut(s) 864, 894
Bsc4I CCNNNNNNNGG 2 cut(s) 731, 834
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 6 cut(s) 76, 647, 736, 953, 1191, 1517
BseAI TCCGGA 1 cut(s) 1484
BseBI CCWGG 4 cut(s) 288, 938, 1071, 1160
BseDI CCNNGG 8 cut(s) 76, 188, 286, 736, 828, 936, 1130, 1355
BseGI GGATG 3 cut(s) 103, 1315, 1390
BseLI CCNNNNNNNGG 2 cut(s) 731, 834
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 6 cut(s) 76, 647, 736, 953, 1191, 1517
BseRI GAGGAG 1 cut(s) 1394
BseXI GCAGC 3 cut(s) 941, 1430, 1459
BsgI GTGCAG 1 cut(s) 1417
Bsh1236I CGCG 1 cut(s) 738
BshFI GGCC 8 cut(s) 5, 75, 187, 552, 693, 735, 827, 1163
BsiSI CCGG 4 cut(s) 12, 39, 168, 1485
BslFI GGGAC 2 cut(s) 1070, 1480
BslI CCNNNNNNNGG 2 cut(s) 731, 834
BsmAI GTCTC 3 cut(s) 203, 286, 398
BsmBI CGTCTC 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 1070, 1480
BsmI GAATGC 1 cut(s) 221
BsnI GGCC 8 cut(s) 5, 75, 187, 552, 693, 735, 827, 1163
Bsp13I TCCGGA 1 cut(s) 1484
Bsp1407I TGTACA 1 cut(s) 742
Bsp143I GATC 3 cut(s) 310, 435, 1344
Bsp19I CCATGG 2 cut(s) 188, 828
BspACI CCGC 4 cut(s) 575, 736, 738, 1165
BspANI GGCC 8 cut(s) 5, 75, 187, 552, 693, 735, 827, 1163
BspCNI CTCAG 1 cut(s) 115
BspEI TCCGGA 1 cut(s) 1484
BspFNI CGCG 1 cut(s) 738
BspLI GGNNCC 2 cut(s) 951, 1353
BspPI GGATC 2 cut(s) 318, 443
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 742
BsrI ACTGG 6 cut(s) 76, 647, 736, 953, 1191, 1517
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 8 cut(s) 76, 188, 286, 736, 828, 936, 1130, 1355
BssMI GATC 3 cut(s) 310, 435, 1344
BssT1I CCWWGG 3 cut(s) 188, 828, 1355
Bst2UI CCWGG 4 cut(s) 288, 938, 1071, 1160
Bst4CI ACNGT 3 cut(s) 409, 449, 1009
Bst6I CTCTTC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 742
BstC8I GCNNGC 4 cut(s) 219, 997, 1165, 1494
BstDEI CTNAG 4 cut(s) 18, 123, 429, 1112
BstDSI CCRYGG 4 cut(s) 188, 736, 828, 1130
BstF5I GGATG 3 cut(s) 103, 1315, 1390
BstFNI CGCG 1 cut(s) 738
BstKTI GATC 3 cut(s) 313, 438, 1347
BstMAI GTCTC 3 cut(s) 203, 286, 398
BstMBI GATC 3 cut(s) 310, 435, 1344
BstMWI GCNNNNNNNGC 2 cut(s) 572, 1164
BstNI CCWGG 4 cut(s) 288, 938, 1071, 1160
BstSCI CCNGG 4 cut(s) 286, 936, 1069, 1158
BstUI CGCG 1 cut(s) 738
BstV1I GCAGC 3 cut(s) 941, 1430, 1459
BsuI GTATCC 3 cut(s) 426, 961, 1006
BsuRI GGCC 8 cut(s) 5, 75, 187, 552, 693, 735, 827, 1163
BtgI CCRYGG 4 cut(s) 188, 736, 828, 1130
BtsCI GGATG 3 cut(s) 103, 1315, 1390
BtsIMutI CAGTG 1 cut(s) 960
Cac8I GCNNGC 4 cut(s) 219, 997, 1165, 1494
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 1067, 1127, 1162
Cfr42I CCGCGG 1 cut(s) 739
Csp6I GTAC 2 cut(s) 743, 1154
CspCI CAANNNNNGTGG 2 cut(s) 1119, 1154
CviAII CATG 5 cut(s) 189, 314, 829, 890, 1305
CviQI GTAC 2 cut(s) 743, 1154
DdeI CTNAG 4 cut(s) 18, 123, 429, 1112
DpnI GATC 3 cut(s) 312, 437, 1346
DpnII GATC 3 cut(s) 310, 435, 1344
EaeI YGGCCR 2 cut(s) 3, 733
Eam1104I CTCTTC 1 cut(s) 659
EarI CTCTTC 1 cut(s) 659
EciI GGCGGA 1 cut(s) 590
Eco130I CCWWGG 3 cut(s) 188, 828, 1355
Eco32I GATATC 2 cut(s) 163, 1228
Eco47I GGWCC 2 cut(s) 1067, 1127
EcoRI GAATTC 1 cut(s) 1239
EcoRII CCWGG 4 cut(s) 286, 936, 1069, 1158
EcoRV GATATC 2 cut(s) 163, 1228
EcoT14I CCWWGG 3 cut(s) 188, 828, 1355
ErhI CCWWGG 3 cut(s) 188, 828, 1355
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 5 cut(s) 192, 317, 832, 893, 1308
FalI AAGNNNNNCTT 4 cut(s) 579, 611, 1455, 1487
FaqI GGGAC 2 cut(s) 1070, 1480
FatI CATG 5 cut(s) 188, 313, 828, 889, 1304
FauI CCCGC 1 cut(s) 1172
Fnu4HI GCNGC 4 cut(s) 736, 930, 1419, 1448
FokI GGATG 3 cut(s) 110, 1322, 1397
Fsp4HI GCNGC 4 cut(s) 736, 930, 1419, 1448
FspBI CTAG 1 cut(s) 1528
GluI GCNGC 4 cut(s) 736, 930, 1419, 1448
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 8 cut(s) 5, 75, 187, 552, 693, 735, 827, 1163
HapII CCGG 4 cut(s) 12, 39, 168, 1485
Hin1II CATG 5 cut(s) 192, 317, 832, 893, 1308
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 1 cut(s) 526
HpaII CCGG 4 cut(s) 12, 39, 168, 1485
HphI GGTGA 3 cut(s) 70, 892, 1418
Hpy166II GTNNAC 2 cut(s) 743, 1506
Hpy188I TCNGA 4 cut(s) 124, 367, 440, 1180
Hpy188III TCNNGA 9 cut(s) 296, 332, 357, 523, 530, 596, 1244, 1460, 1485
Hpy8I GTNNAC 2 cut(s) 743, 1506
HpyAV CCTTC 9 cut(s) 46, 88, 244, 301, 542, 612, 649, 1396, 1457
HpyCH4III ACNGT 3 cut(s) 409, 449, 1009
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 4 cut(s) 217, 233, 1298, 1434
HpyF10VI GCNNNNNNNGC 2 cut(s) 572, 1164
HpyF3I CTNAG 4 cut(s) 18, 123, 429, 1112
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 5 cut(s) 192, 317, 832, 893, 1308
Kpn2I TCCGGA 1 cut(s) 1484
KspI CCGCGG 1 cut(s) 739
Kzo9I GATC 3 cut(s) 310, 435, 1344
LmnI GCTCC 3 cut(s) 334, 1357, 1415
Lsp1109I GCAGC 3 cut(s) 941, 1430, 1459
LweI GCATC 4 cut(s) 25, 204, 220, 1270
MaeI CTAG 1 cut(s) 1528
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 6 cut(s) 346, 449, 1169, 1361, 1425, 1523
MalI GATC 3 cut(s) 312, 437, 1346
MboI GATC 3 cut(s) 310, 435, 1344
MboII GAAGA 4 cut(s) 73, 217, 599, 676
MlyI GAGTC 1 cut(s) 535
MmeI TCCRAC 2 cut(s) 419, 1055
MroI TCCGGA 1 cut(s) 1484
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 2 cut(s) 182, 1052
MslI CAYNNNNRTG 2 cut(s) 894, 1196
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 4 cut(s) 12, 39, 168, 1485
MspR9I CCNGG 4 cut(s) 288, 938, 1071, 1160
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 4 cut(s) 288, 938, 1071, 1160
MvnI CGCG 1 cut(s) 738
MwoI GCNNNNNNNGC 2 cut(s) 572, 1164
NcoI CCATGG 2 cut(s) 188, 828
NdeII GATC 3 cut(s) 310, 435, 1344
NlaIII CATG 5 cut(s) 192, 317, 832, 893, 1308
NlaIV GGNNCC 2 cut(s) 951, 1353
NmuCI GTSAC 5 cut(s) 346, 449, 1169, 1361, 1425
PctI GAATGC 1 cut(s) 221
PdmI GAANNNNTTC 1 cut(s) 591
PflFI GACNNNGTC 1 cut(s) 196
PflMI CCANNNNNTGG 2 cut(s) 731, 834
PkrI GCNGC 4 cut(s) 737, 931, 1420, 1449
PleI GAGTC 1 cut(s) 534
PpsI GAGTC 1 cut(s) 534
Psp6I CCWGG 4 cut(s) 286, 936, 1069, 1158
PspGI CCWGG 4 cut(s) 286, 936, 1069, 1158
PspN4I GGNNCC 2 cut(s) 951, 1353
PspPI GGNCC 3 cut(s) 1067, 1127, 1162
PsrI GAACNNNNNNTAC 2 cut(s) 997, 1029
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 2 cut(s) 744, 1155
RsaNI GTAC 2 cut(s) 743, 1154
RseI CAYNNNNRTG 2 cut(s) 894, 1196
SacII CCGCGG 1 cut(s) 739
SaqAI TTAA 2 cut(s) 182, 1052
SatI GCNGC 4 cut(s) 736, 930, 1419, 1448
Sau3AI GATC 3 cut(s) 310, 435, 1344
Sau96I GGNCC 3 cut(s) 1067, 1127, 1162
SchI GAGTC 1 cut(s) 535
ScrFI CCNGG 4 cut(s) 288, 938, 1071, 1160
SfaNI GCATC 4 cut(s) 25, 204, 220, 1270
Sfr303I CCGCGG 1 cut(s) 739
SgrBI CCGCGG 1 cut(s) 739
SinI GGWCC 2 cut(s) 1067, 1127
SmiMI CAYNNNNRTG 2 cut(s) 894, 1196
SmlI CTYRAG 3 cut(s) 596, 674, 1000
SmoI CTYRAG 3 cut(s) 596, 674, 1000
SsiI CCGC 4 cut(s) 575, 736, 738, 1165
SspI AATATT 1 cut(s) 635
SspMI CTAG 1 cut(s) 1528
StyD4I CCNGG 4 cut(s) 286, 936, 1069, 1158
StyI CCWWGG 3 cut(s) 188, 828, 1355
TaaI ACNGT 3 cut(s) 409, 449, 1009
TaiI ACGT 1 cut(s) 394
TaqI TCGA 4 cut(s) 228, 490, 862, 1443
TaqII GACCGA 2 cut(s) 68, 1037
TatI WGTACW 1 cut(s) 742
TauI GCSGC 1 cut(s) 738
Tru1I TTAA 2 cut(s) 182, 1052
Tru9I TTAA 2 cut(s) 182, 1052
TscAI CASTG 1 cut(s) 960
TseFI GTSAC 5 cut(s) 346, 449, 1169, 1361, 1425
TseI GCWGC 3 cut(s) 929, 1418, 1447
Tsp45I GTSAC 5 cut(s) 346, 449, 1169, 1361, 1425
TspDTI ATGAA 7 cut(s) 125, 263, 600, 825, 878, 1112, 1326
TspRI CASTG 1 cut(s) 960
Tth111I GACNNNGTC 1 cut(s) 196
Van91I CCANNNNNTGG 2 cut(s) 731, 834
VpaK11BI GGWCC 2 cut(s) 1067, 1127
XapI RAATTY 5 cut(s) 103, 680, 775, 1239, 1313
XcmI CCANNNNNNNNNTGG 2 cut(s) 339, 1500
XmnI GAANNNNTTC 1 cut(s) 591
XspI CTAG 1 cut(s) 1528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.