Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

85445158 .. 85446104

Gene Structure 947 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00063640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGGAGCTGTACAGAAAGATATATGAGGAATATTTGGCGGTTCCAGTTATGAAGGGACAGAAGACGGAGCTTGAGAAATTCGCCGGTGCTCTTTACACCACCAGTGTGGAGGCTTTTATTCCTAATGCCGGCCGCGGTATACAAGGCCATGGTTTGGCAAAACTCTTGGGTTTACACCACTCGAACGATTGGAGTGATGGTGATGGTGCATGGAGTCATGGAGATGACAGAGGGTTGGTAATGCCACCTAAAGTGGCAACTCTGCAGGCTATTGTGATTCCAGTGATTTCTAGGAATGCTGATGCAGAAGCCATATTGGAGGCCTGCCGGAAAACTTTAGACACCTTGAAAAAAGCCGGTTTTCGTGTTAAGGCAGATTTGAGTAGAAACTCTACACCTGGTCAGAAGTATTGGCATTGGGAGATGAAAGGTGTTCCTCTGAGGATTGAAATAGGACAGAGGGATTTAGACAGAAATCAAGTGCGGTTTGTTCGTCGGGACAACTCCGAAAAAGTGGACATTCCTCTGAACAATGATTTGGTTGAGCGAGTAAAGGAGACGTTGGATAGAATTCAGCAAAACATGTTTGATGTTGCAAGGGAAAAACGAGATGCTTGTTTCCAAGTTGCAAGGACATGGGAGGAATTTACGGAAGCTCTAAACCAAAAGAAAATGATCTTGGCTGCTTGGTGTGACGAAAAGGATGTGGAAGAGGATGTGAAAAAACGAACCAAGGATGAAGGTGAGATGGGAGCAGCTAAATCGCTCTGCACCCCATTTGAGCAGCCTGAACTTGCTGAAGGGACACTTTGCTTTGCCTCTGGAAAGCCAGCAAGGAAGTGGACCTATTGGGGAAGGACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

289

Amino Acids

32.95

Weight (kDa)

6.97

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	90 - 187	4.6e-20	Anticodon binding domain
ProRS-C_1	PF09180	214 - 289	7.1e-24	Prolyl-tRNA synthetase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	142
AccII	CGCG	1 cut(s)	138
AciI	CCGC	4 cut(s)	41, 136, 138, 487
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	3 cut(s)	80, 573, 647
AcuI	CTGAAG	1 cut(s)	822
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	2 cut(s)	131, 157
AflIII	ACRYGT	1 cut(s)	585
AgsI	TTSAA	2 cut(s)	352, 452
AjnI	CCWGG	1 cut(s)	400
AjuI	GAANNNNNNNTTGG	4 cut(s)	524, 556, 665, 697
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	4 cut(s)	10, 73, 659, 761
AluI	AGCT	4 cut(s)	10, 73, 659, 761
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	554
AoxI	GGCC	3 cut(s)	133, 148, 324
ApeKI	GCWGC	3 cut(s)	686, 758, 787
ApoI	RAATTY	3 cut(s)	80, 573, 647
AspS9I	GGNCC	1 cut(s)	846
AsuHPI	GGTGA	2 cut(s)	215, 758
AvaII	GGWCC	1 cut(s)	846
BbsI	GAAGAC	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	3 cut(s)	673, 770, 799
BccI	CCATC	3 cut(s)	194, 200, 745
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	402
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	2 cut(s)	294, 868
BfmI	CTRYAG	1 cut(s)	266
BisI	GCNGC	4 cut(s)	136, 687, 759, 788
BlsI	GCNGC	4 cut(s)	137, 688, 760, 789
Bme1390I	CCNGG	1 cut(s)	402
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	295, 604
BpiI	GAAGAC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	136, 151, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 157
Bse118I	RCCGGY	3 cut(s)	86, 131, 359
Bse1I	ACTGG	3 cut(s)	47, 105, 284
BseBI	CCWGG	1 cut(s)	402
BseDI	CCNNGG	3 cut(s)	136, 151, 735
BseGI	GGATG	3 cut(s)	712, 724, 745
BseLI	CCNNNNNNNGG	2 cut(s)	131, 157
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	3 cut(s)	47, 105, 284
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	673, 770, 799
BsgI	GTGCAG	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	138
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	135, 150, 326
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	4 cut(s)	87, 132, 331, 360
BslFI	GGGAC	3 cut(s)	72, 515, 820
BslI	CCNNNNNNNGG	2 cut(s)	131, 157
BsmAI	GTCTC	1 cut(s)	554
BsmBI	CGTCTC	1 cut(s)	554
BsmFI	GGGAC	3 cut(s)	72, 515, 820
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	135, 150, 326
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	1 cut(s)	678
Bsp19I	CCATGG	1 cut(s)	151
BspACI	CCGC	4 cut(s)	41, 136, 138, 487
BspANI	GGCC	3 cut(s)	135, 150, 326
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	45
BspMAI	CTGCAG	1 cut(s)	270
BsrFI	RCCGGY	3 cut(s)	86, 131, 359
BsrGI	TGTACA	1 cut(s)	12
BsrI	ACTGG	3 cut(s)	47, 105, 284
BssAI	RCCGGY	3 cut(s)	86, 131, 359
BssECI	CCNNGG	3 cut(s)	136, 151, 735
BssMI	GATC	1 cut(s)	678
BssNAI	GTATAC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	151, 735
Bst1107I	GTATAC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	402
Bst6I	CTCTTC	1 cut(s)	708
BstAUI	TGTACA	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	133, 270, 328, 834
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	2 cut(s)	136, 151
BstF5I	GGATG	3 cut(s)	712, 724, 745
BstFNI	CGCG	1 cut(s)	138
BstKTI	GATC	1 cut(s)	681
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	1 cut(s)	678
BstMCI	CGRYCG	1 cut(s)	136
BstNI	CCWGG	1 cut(s)	402
BstNSI	RCATGY	1 cut(s)	589
BstSCI	CCNGG	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	1 cut(s)	138
BstV1I	GCAGC	3 cut(s)	673, 770, 799
BstV2I	GAAGAC	1 cut(s)	71
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	143
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	135, 150, 326
BtgI	CCRYGG	2 cut(s)	136, 151
BtsCI	GGATG	3 cut(s)	712, 724, 745
BtsIMutI	CAGTG	2 cut(s)	112, 291
Cac8I	GCNNGC	4 cut(s)	133, 270, 328, 834
Cfr10I	RCCGGY	3 cut(s)	86, 131, 359
Cfr13I	GGNCC	1 cut(s)	846
Cfr42I	CCGCGG	1 cut(s)	139
CsiI	ACCWGGT	1 cut(s)	400
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	5 cut(s)	152, 213, 221, 586, 639
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	1 cut(s)	680
DpnII	GATC	1 cut(s)	678
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	151, 735
Eco147I	AGGCCT	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	846
Eco52I	CGGCCG	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	822
EcoRI	GAATTC	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	400
EcoT14I	CCWWGG	2 cut(s)	151, 735
ErhI	CCWWGG	2 cut(s)	151, 735
Esp3I	CGTCTC	1 cut(s)	554
FaeI	CATG	5 cut(s)	155, 216, 224, 589, 642
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FaqI	GGGAC	3 cut(s)	72, 515, 820
FatI	CATG	5 cut(s)	151, 212, 220, 585, 638
FblI	GTMKAC	1 cut(s)	142
Fnu4HI	GCNGC	4 cut(s)	136, 687, 759, 788
FokI	GGATG	3 cut(s)	719, 731, 752
Fsp4HI	GCNGC	4 cut(s)	136, 687, 759, 788
FspBI	CTAG	2 cut(s)	294, 868
GluI	GCNGC	4 cut(s)	136, 687, 759, 788
HaeIII	GGCC	3 cut(s)	135, 150, 326
HapII	CCGG	4 cut(s)	87, 132, 331, 360
Hin1II	CATG	5 cut(s)	155, 216, 224, 589, 642
HinfI	GANTC	2 cut(s)	217, 280
HpaII	CCGG	4 cut(s)	87, 132, 331, 360
HphI	GGTGA	2 cut(s)	215, 758
Hpy166II	GTNNAC	4 cut(s)	143, 176, 520, 846
Hpy188I	TCNGA	4 cut(s)	408, 444, 511, 531
Hpy188III	TCNNGA	2 cut(s)	500, 825
Hpy8I	GTNNAC	4 cut(s)	143, 176, 520, 846
Hpy99I	CGWCG	1 cut(s)	501
HpyAV	CCTTC	4 cut(s)	49, 737, 797, 852
HpyCH4IV	ACGT	1 cut(s)	563
HpyCH4V	TGCA	6 cut(s)	212, 268, 308, 599, 632, 774
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	563
Hsp92II	CATG	5 cut(s)	155, 216, 224, 589, 642
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
KspI	CCGCGG	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	678
LmnI	GCTCC	3 cut(s)	7, 70, 755
Lsp1109I	GCAGC	3 cut(s)	673, 770, 799
LweI	GCATC	2 cut(s)	295, 604
MabI	ACCWGGT	1 cut(s)	400
MaeI	CTAG	2 cut(s)	294, 868
MaeII	ACGT	1 cut(s)	563
MaeIII	GTNAC	1 cut(s)	695
MalI	GATC	1 cut(s)	680
MboI	GATC	1 cut(s)	678
MboII	GAAGA	2 cut(s)	76, 725
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	3 cut(s)	80, 573, 647
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	546
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	2 cut(s)	107, 225
MspA1I	CMGCKG	1 cut(s)	138
MspI	CCGG	4 cut(s)	87, 132, 331, 360
MspR9I	CCNGG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	304
MvaI	CCWGG	1 cut(s)	402
MvnI	CGCG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	151
NdeII	GATC	1 cut(s)	678
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	5 cut(s)	155, 216, 224, 589, 642
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	695
NspI	RCATGY	1 cut(s)	589
OliI	CACNNNNGTG	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	326
PciI	ACATGT	1 cut(s)	585
PctI	GAATGC	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	280
PflMI	CCANNNNNTGG	1 cut(s)	157
PkrI	GCNGC	4 cut(s)	137, 688, 760, 789
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PscI	ACATGT	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	400
PspGI	CCWGG	1 cut(s)	400
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	846
PstI	CTGCAG	1 cut(s)	270
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	2 cut(s)	107, 225
SacII	CCGCGG	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	136, 687, 759, 788
Sau3AI	GATC	1 cut(s)	678
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	402
SduI	GDGCHC	1 cut(s)	94
SexAI	ACCWGGT	1 cut(s)	400
SfaNI	GCATC	2 cut(s)	295, 604
SfcI	CTRYAG	1 cut(s)	266
Sfr303I	CCGCGG	1 cut(s)	139
SgrAI	CRCCGGYG	1 cut(s)	86
SgrBI	CCGCGG	1 cut(s)	139
SinI	GGWCC	1 cut(s)	846
SmiMI	CAYNNNNRTG	2 cut(s)	107, 225
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	3 cut(s)	80, 573, 647
SseBI	AGGCCT	1 cut(s)	326
SsiI	CCGC	4 cut(s)	41, 136, 138, 487
SspI	AATATT	1 cut(s)	35
SspMI	CTAG	2 cut(s)	294, 868
StuI	AGGCCT	1 cut(s)	326
StyD4I	CCNGG	1 cut(s)	400
StyI	CCWWGG	2 cut(s)	151, 735
TaiI	ACGT	1 cut(s)	566
TaqI	TCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	80, 573, 647
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	112, 291
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	686, 758, 787
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	3 cut(s)	68, 443, 756
TspGWI	ACGGA	2 cut(s)	83, 668
TspRI	CASTG	2 cut(s)	112, 291
Van91I	CCANNNNNTGG	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	846
XapI	RAATTY	3 cut(s)	80, 573, 647
XceI	RCATGY	1 cut(s)	589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	840
XmiI	GTMKAC	1 cut(s)	142
XspI	CTAG	2 cut(s)	294, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.