Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

15789135 .. 15791433

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G138800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGGCGGATGCCGGTGCTAAGAAGTCTAACTCCAATACCAAGAGTGGAGGGAAAAAGAAGGACGTGAAGAAAGAAACTGGCCTAGGTCTTTCCAAGAAGAAGGATGAGAATTTTGGAGAGTGGTATTCTGAGGCCATGGACGATGTCAATATGGGAGACAATGCAAACATTCTTCGATGCCGAAATAAAGAGAAGGAAGGTAAAAATACCTATTTCCCTTTGTTTGTCTCCCCAAGTGTTCTGGAAAAAGAGAAGGATCATATAGAGGGTTTTGCTCCAGAGGTTGCTTGGGTCACCAAGTGTGGAAAATCTGAATTGGAAGTGCCAATAGCAATACGTCCAACAAGTGAGACTATTATTTACCCTTATTTCTCTAAGTGGATCAGAGGACACCGTGACTTACCATTGAAGCTAAATCAATGGTGCAATGTTGTTCGATGGGAGTTCAGCAATCCTACTCCATTTATCAGGAGTAGGGAGTTTCTTTGGCAAGAAGGCCATACAGCTTTTGCAACACAGGCAGAGGCAGATGAAGAGGTTCTTGAGATATTGGAATTATACAGAAGGATATATGAGGAATACTTGGCAATTCCAGTTGTGAAGGGAAAGAAGAGTGAGCTTGAGAAATTTGCTGGTGGCCTTTACACTACAAGTGTGGAGGCTTTTATTCCAAATACTGGCCGCGGTGTACAAGGTGCTACCTCGCATTGTTTGGGTCAAAATTTTGCTAAAATGTTTGGGATAGAGTTTGAAAATGAAAAGGGTGGAAAGGCCATGGTTTGGCAAAACTCTTGGGCATATAGCACTCCAACGCCAGCAAAGAAGTGGAGTTACTGGGGCAGGAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

284

Amino Acids

32.25

Weight (kDa)

8.47

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	677, 780
AccII	CGCG	1 cut(s)	684
AciI	CCGC	3 cut(s)	5, 682, 684
AclWI	GGATC	2 cut(s)	264, 389
AcoI	YGGCCR	1 cut(s)	679
AcsI	RAATTY	3 cut(s)	109, 626, 721
AdeI	CACNNNGTG	1 cut(s)	300
AfaI	GTAC	1 cut(s)	690
AfiI	CCNNNNNNNGG	2 cut(s)	677, 780
AgsI	TTSAA	2 cut(s)	409, 752
AjiI	CACGTC	1 cut(s)	64
AluBI	AGCT	3 cut(s)	412, 506, 619
AluI	AGCT	3 cut(s)	412, 506, 619
Alw26I	GTCTC	3 cut(s)	150, 232, 344
AlwI	GGATC	2 cut(s)	264, 389
AoxI	GGCC	6 cut(s)	79, 132, 496, 637, 679, 771
ApoI	RAATTY	3 cut(s)	109, 626, 721
Asp700I	GAANNNNTTC	1 cut(s)	537
AspA2I	CCTAGG	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	286
AvrII	CCTAGG	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	815, 847
BccI	CCATC	1 cut(s)	432
BcoDI	GTCTC	3 cut(s)	150, 232, 344
BfaI	CTAG	2 cut(s)	83, 850
BisI	GCNGC	1 cut(s)	682
BlnI	CCTAGG	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	683
BmgBI	CACGTC	1 cut(s)	64
BmrI	ACTGGG	1 cut(s)	844
BmsI	GCATC	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	844
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	563, 641
BsaJI	CCNNGG	4 cut(s)	82, 135, 682, 774
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 780
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	82, 593, 682, 839
Bse3DI	GCAATG	1 cut(s)	433
BseDI	CCNNGG	4 cut(s)	82, 135, 682, 774
BseGI	GGATG	2 cut(s)	13, 109
BseLI	CCNNNNNNNGG	2 cut(s)	677, 780
BseMI	GCAATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	4 cut(s)	82, 593, 682, 839
Bsh1236I	CGCG	1 cut(s)	684
BshFI	GGCC	6 cut(s)	81, 134, 498, 639, 681, 773
BsiSI	CCGG	1 cut(s)	12
BslI	CCNNNNNNNGG	2 cut(s)	677, 780
BsmAI	GTCTC	3 cut(s)	150, 232, 344
BsnI	GGCC	6 cut(s)	81, 134, 498, 639, 681, 773
Bsp1407I	TGTACA	1 cut(s)	688
Bsp143I	GATC	2 cut(s)	256, 381
Bsp19I	CCATGG	2 cut(s)	135, 774
BspACI	CCGC	3 cut(s)	5, 682, 684
BspANI	GGCC	6 cut(s)	81, 134, 498, 639, 681, 773
BspCNI	CTCAG	1 cut(s)	121
BspFNI	CGCG	1 cut(s)	684
BspPI	GGATC	2 cut(s)	264, 389
BsrDI	GCAATG	1 cut(s)	433
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	688
BsrI	ACTGG	4 cut(s)	82, 593, 682, 839
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	4 cut(s)	82, 135, 682, 774
BssMI	GATC	2 cut(s)	256, 381
BssT1I	CCWWGG	3 cut(s)	82, 135, 774
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	528, 605
BstAUI	TGTACA	1 cut(s)	688
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	3 cut(s)	18, 129, 375
BstDSI	CCRYGG	3 cut(s)	135, 682, 774
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	13, 109
BstFNI	CGCG	1 cut(s)	684
BstKTI	GATC	2 cut(s)	259, 384
BstMAI	GTCTC	3 cut(s)	150, 232, 344
BstMBI	GATC	2 cut(s)	256, 381
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstPI	GGTNACC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	684
BsuRI	GGCC	6 cut(s)	81, 134, 498, 639, 681, 773
BtgI	CCRYGG	3 cut(s)	135, 682, 774
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	13, 109
Cac8I	GCNNGC	1 cut(s)	816
Cfr10I	RCCGGY	1 cut(s)	11
Cfr42I	CCGCGG	1 cut(s)	685
Csp6I	GTAC	1 cut(s)	689
CviAII	CATG	2 cut(s)	136, 775
CviQI	GTAC	1 cut(s)	689
DdeI	CTNAG	3 cut(s)	18, 129, 375
DpnI	GATC	2 cut(s)	258, 383
DpnII	GATC	2 cut(s)	256, 381
DraIII	CACNNNGTG	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	679
Eam1104I	CTCTTC	2 cut(s)	528, 605
EarI	CTCTTC	2 cut(s)	528, 605
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	3 cut(s)	82, 135, 774
Eco91I	GGTNACC	1 cut(s)	292
EcoO65I	GGTNACC	1 cut(s)	292
EcoT14I	CCWWGG	3 cut(s)	82, 135, 774
ErhI	CCWWGG	3 cut(s)	82, 135, 774
FaeI	CATG	2 cut(s)	139, 778
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FatI	CATG	2 cut(s)	135, 774
Fnu4HI	GCNGC	1 cut(s)	682
FokI	GGATG	2 cut(s)	20, 116
Fsp4HI	GCNGC	1 cut(s)	682
FspBI	CTAG	2 cut(s)	83, 850
GluI	GCNGC	1 cut(s)	682
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	6 cut(s)	81, 134, 498, 639, 681, 773
HapII	CCGG	1 cut(s)	12
Hin1II	CATG	2 cut(s)	139, 778
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	3 cut(s)	130, 313, 386
Hpy188III	TCNNGA	4 cut(s)	242, 278, 469, 542
Hpy8I	GTNNAC	1 cut(s)	689
HpyAV	CCTTC	8 cut(s)	52, 94, 187, 191, 247, 488, 558, 595
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	2 cut(s)	63, 337
HpyCH4V	TGCA	3 cut(s)	164, 426, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
HpyF3I	CTNAG	3 cut(s)	18, 129, 375
HpySE526I	ACGT	2 cut(s)	63, 337
Hsp92II	CATG	2 cut(s)	139, 778
KspI	CCGCGG	1 cut(s)	685
Kzo9I	GATC	2 cut(s)	256, 381
LmnI	GCTCC	1 cut(s)	280
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	83, 850
MaeII	ACGT	2 cut(s)	63, 337
MaeIII	GTNAC	4 cut(s)	292, 395, 830, 845
MalI	GATC	2 cut(s)	258, 383
MboI	GATC	2 cut(s)	256, 381
MboII	GAAGA	5 cut(s)	79, 109, 164, 545, 622
MluCI	AATT	6 cut(s)	109, 314, 554, 588, 626, 721
MmeI	TCCRAC	2 cut(s)	365, 833
MroXI	GAANNNNTTC	1 cut(s)	537
MspA1I	CMGCKG	1 cut(s)	684
MspI	CCGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	1 cut(s)	518
NcoI	CCATGG	2 cut(s)	135, 774
NdeII	GATC	2 cut(s)	256, 381
NlaIII	CATG	2 cut(s)	139, 778
NmuCI	GTSAC	2 cut(s)	292, 395
PdmI	GAANNNNTTC	1 cut(s)	537
PflFI	GACNNNGTC	1 cut(s)	143
PflMI	CCANNNNNTGG	2 cut(s)	677, 780
PkrI	GCNGC	1 cut(s)	683
PspEI	GGTNACC	1 cut(s)	292
PsyI	GACNNNGTC	1 cut(s)	143
RsaI	GTAC	1 cut(s)	690
RsaNI	GTAC	1 cut(s)	689
SacII	CCGCGG	1 cut(s)	685
SatI	GCNGC	1 cut(s)	682
Sau3AI	GATC	2 cut(s)	256, 381
SfaNI	GCATC	1 cut(s)	167
Sfr303I	CCGCGG	1 cut(s)	685
SgrBI	CCGCGG	1 cut(s)	685
SmlI	CTYRAG	2 cut(s)	542, 620
SmoI	CTYRAG	2 cut(s)	542, 620
Sse9I	AATT	6 cut(s)	109, 314, 554, 588, 626, 721
SsiI	CCGC	3 cut(s)	5, 682, 684
SspMI	CTAG	2 cut(s)	83, 850
StyI	CCWWGG	3 cut(s)	82, 135, 774
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	2 cut(s)	66, 340
TaqI	TCGA	2 cut(s)	175, 436
TasI	AATT	6 cut(s)	109, 314, 554, 588, 626, 721
TatI	WGTACW	1 cut(s)	688
TauI	GCSGC	1 cut(s)	684
TseFI	GTSAC	2 cut(s)	292, 395
Tsp45I	GTSAC	2 cut(s)	292, 395
TspDTI	ATGAA	2 cut(s)	546, 771
Tth111I	GACNNNGTC	1 cut(s)	143
Van91I	CCANNNNNTGG	2 cut(s)	677, 780
XapI	RAATTY	3 cut(s)	109, 626, 721
XcmI	CCANNNNNNNNNTGG	2 cut(s)	285, 822
XmaJI	CCTAGG	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	2 cut(s)	83, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.