Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

8324399 .. 8328408

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12040.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCAAGCATTCTTTGATGCAGAAATAAAGAAAATGAAGATAAAGAATTGCTATTTCCCTTTATTTGTCTCCCCTGGTGTTCTGGAACGATTTGAGAAGGATCATATAGAGGGTTTTGCTCCAGAGGTTGCATGGGTTACAAAGTCTGGAAAGTCTGACTTGGAAGTGCCAATAGCAATTCGTCCAACCAGTGAGACTGTTATGTATCCTTATTTTGCTAAGTGGATCAGAGGACACCGTGATTTGCCATTGAAGCTAAATCAGTGGTGCAATGTTGTCCGGTGGGAGTTCAGCAATCCTACACCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCATACAGCTTTTGCAACAAAGGCAGAGGCAGCTGAAGAGGTCCTTGAGATATTGGAACTGTACCGAAGGATATACGAGGAGTATTTGGCAGTTCCAGTTGTGAAGGGAAAAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTATACTACTAGTGTGGAGGCTTTTATTCCAAATACGGGCCGTGGCGTACAAGGTGCCACCTCACATTGTTTGGGTCAAAATTTTGCCAAAATGTTTGAGATTAATTTTGAAAATGAAAACAGAGAAAAGGGCATGGTTTGGCAAAACTCTTGGGCATATAGCACTCGAACGATTGGAGTGATGGTGATGGTGCACGGAGATGACAAAGGCTTGGTATTACCACCTAAAGTAGCAGCTATTCAGGCTATTGTGGTTCCAGTGCCTTACAAGAATACTCCTATGGAAGAGATATATGATGCCTGCTCGAAAACTGTGGATACCTTGACTAAAGCTGGTATTCGCGCTGAGGCAGATATAAGTGACAACCAAACTCCTGGTTGGAAGTATTCACATTGGGAAATGAAAGGTGTTCCTCTAAGGATTGAAATCGGACCAAAGGATCTGGAAAAAAATCAAGTACGTGTTGTCCGCCGTGACAATTCAGCAAAAGAGGACATTCCTGTGAGCAACTTGGTTGAGCAAGTACAAGACATCTTGGTGAAAATTCACGAAAATCTGTTCAATGTTGCAAAGGAAAAACGAGATGCTTCTATCAAGGTTGCAAAGACATGGGAAGAATTTATGGAAGCTCTAAACCAAAAGAAAATGATCTTGGCTCCTTGGTGTGATGAACAGGCTGTAGAAGAGGATGTGAAAAAACGAACAAAGGGTGAAATCGGAGCAGCCAAGTCGCTGTGCACCCCATTTGAGCAGCCCGAACTTCCTGAAGGGACACCTTGTTTTGCCTCTGGAAAACCAGCGAAGAAGTGGACCTACTGGGGCAGGAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

440

Amino Acids

50.11

Weight (kDa)

6.7

Isoelectric Point (pI)

39.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	1 cut(s)	828
AciI	CCGC	1 cut(s)	955
AclWI	GGATC	3 cut(s)	108, 233, 933
AcsI	RAATTY	4 cut(s)	470, 565, 1029, 1103
AcuI	CTGAAG	2 cut(s)	396, 1272
AfaI	GTAC	4 cut(s)	404, 534, 945, 1011
AfiI	CCNNNNNNNGG	1 cut(s)	521
AflIII	ACRYGT	1 cut(s)	946
AgsI	TTSAA	4 cut(s)	253, 596, 911, 1048
AhlI	ACTAGT	1 cut(s)	494
AjnI	CCWGG	2 cut(s)	73, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	1121, 1153
AluBI	AGCT	6 cut(s)	256, 350, 374, 722, 818, 1115
AluI	AGCT	6 cut(s)	256, 350, 374, 722, 818, 1115
Alw21I	GWGCWC	2 cut(s)	681, 1226
Alw26I	GTCTC	2 cut(s)	73, 188
Alw44I	GTGCAC	2 cut(s)	677, 1222
AlwI	GGATC	3 cut(s)	108, 233, 933
AoxI	GGCC	2 cut(s)	340, 523
ApaLI	GTGCAC	2 cut(s)	677, 1222
ApeKI	GCWGC	4 cut(s)	371, 719, 1208, 1237
ApoI	RAATTY	4 cut(s)	470, 565, 1029, 1103
AseI	ATTAAT	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	4 cut(s)	382, 523, 917, 1296
AsuHPI	GGTGA	3 cut(s)	682, 1036, 1208
AvaII	GGWCC	3 cut(s)	382, 917, 1296
BaeGI	GKGCMC	2 cut(s)	681, 1226
BanI	GGYRCC	1 cut(s)	539
BarI	GAAGNNNNNNTAC	2 cut(s)	1283, 1315
Bbv12I	GWGCWC	2 cut(s)	681, 1226
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	4 cut(s)	383, 731, 1220, 1249
BccI	CCATC	2 cut(s)	661, 667
BceAI	ACGGC	2 cut(s)	510, 942
BcgI	CGANNNNNNTGC	2 cut(s)	1197, 1231
BciT130I	CCWGG	2 cut(s)	75, 861
BciVI	GTATCC	2 cut(s)	216, 796
BcoDI	GTCTC	2 cut(s)	73, 188
BcuI	ACTAGT	1 cut(s)	494
BfaI	CTAG	2 cut(s)	495, 1318
BfmI	CTRYAG	1 cut(s)	1164
BfuI	GTATCC	2 cut(s)	216, 796
BisI	GCNGC	4 cut(s)	372, 720, 1209, 1238
BlsI	GCNGC	4 cut(s)	373, 721, 1210, 1239
Bme1390I	CCNGG	2 cut(s)	75, 861
Bme18I	GGWCC	3 cut(s)	382, 917, 1296
BmgT120I	GGNCC	4 cut(s)	382, 523, 917, 1296
BmiI	GGNNCC	3 cut(s)	541, 741, 1143
BmrFI	CCNGG	2 cut(s)	75, 861
BmrI	ACTGGG	1 cut(s)	1312
BmsI	GCATC	3 cut(s)	7, 772, 1060
BmuI	ACTGGG	1 cut(s)	1312
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	947
BsaBI	GATNNNNATC	1 cut(s)	911
BsaJI	CCNNGG	3 cut(s)	73, 526, 1145
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	1 cut(s)	521
Bse1I	ACTGG	4 cut(s)	189, 437, 743, 1307
Bse3DI	GCAATG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	911
BseBI	CCWGG	2 cut(s)	75, 861
BseDI	CCNNGG	3 cut(s)	73, 526, 1145
BseGI	GGATG	1 cut(s)	1180
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	1 cut(s)	521
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	4 cut(s)	189, 437, 743, 1307
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	2 cut(s)	681, 1226
BseXI	GCAGC	4 cut(s)	383, 731, 1220, 1249
Bsh1236I	CGCG	1 cut(s)	828
BshFI	GGCC	2 cut(s)	342, 525
BshNI	GGYRCC	1 cut(s)	539
BsiHKAI	GWGCWC	2 cut(s)	681, 1226
BsiSI	CCGG	1 cut(s)	280
BslFI	GGGAC	1 cut(s)	1270
BslI	CCNNNNNNNGG	1 cut(s)	521
BsmAI	GTCTC	2 cut(s)	73, 188
BsmFI	GGGAC	1 cut(s)	1270
BsmI	GAATGC	1 cut(s)	8
BsnI	GGCC	2 cut(s)	342, 525
Bsp1286I	GDGCHC	2 cut(s)	681, 1226
Bsp143I	GATC	4 cut(s)	100, 225, 925, 1134
BspACI	CCGC	1 cut(s)	955
BspANI	GGCC	2 cut(s)	342, 525
BspCNI	CTCAG	1 cut(s)	823
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	541, 741, 1143
BspPI	GGATC	3 cut(s)	108, 233, 933
BspT107I	GGYRCC	1 cut(s)	539
BsrDI	GCAATG	1 cut(s)	277
BsrI	ACTGG	4 cut(s)	189, 437, 743, 1307
BssECI	CCNNGG	3 cut(s)	73, 526, 1145
BssMI	GATC	4 cut(s)	100, 225, 925, 1134
BssT1I	CCWWGG	1 cut(s)	1145
Bst2UI	CCWGG	2 cut(s)	75, 861
Bst4CI	ACNGT	4 cut(s)	199, 239, 402, 799
Bst6I	CTCTTC	3 cut(s)	372, 765, 1164
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	2 cut(s)	6, 787
BstDEI	CTNAG	3 cut(s)	219, 831, 902
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	1 cut(s)	1180
BstFNI	CGCG	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	4 cut(s)	103, 228, 928, 1137
BstMAI	GTCTC	2 cut(s)	73, 188
BstMBI	GATC	4 cut(s)	100, 225, 925, 1134
BstMWI	GCNNNNNNNGC	4 cut(s)	253, 362, 371, 728
BstNI	CCWGG	2 cut(s)	75, 861
BstSCI	CCNGG	2 cut(s)	73, 859
BstSFI	CTRYAG	1 cut(s)	1164
BstSLI	GKGCMC	2 cut(s)	681, 1226
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	4 cut(s)	383, 731, 1220, 1249
BstX2I	RGATCY	1 cut(s)	925
BstXI	CCANNNNNNTGG	1 cut(s)	860
BstYI	RGATCY	1 cut(s)	925
BsuI	GTATCC	2 cut(s)	216, 796
BsuRI	GGCC	2 cut(s)	342, 525
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	1 cut(s)	1180
BtsIMutI	CAGTG	3 cut(s)	196, 269, 750
Cac8I	GCNNGC	2 cut(s)	6, 787
CfoI	GCGC	1 cut(s)	830
Cfr13I	GGNCC	4 cut(s)	382, 523, 917, 1296
Csp6I	GTAC	4 cut(s)	403, 533, 944, 1010
CviAII	CATG	3 cut(s)	132, 619, 1095
CviQI	GTAC	4 cut(s)	403, 533, 944, 1010
DdeI	CTNAG	3 cut(s)	219, 831, 902
DpnI	GATC	4 cut(s)	102, 227, 927, 1136
DpnII	GATC	4 cut(s)	100, 225, 925, 1134
Eam1104I	CTCTTC	3 cut(s)	372, 765, 1164
EarI	CTCTTC	3 cut(s)	372, 765, 1164
EciI	GGCGGA	1 cut(s)	944
Eco130I	CCWWGG	1 cut(s)	1145
Eco47I	GGWCC	3 cut(s)	382, 917, 1296
Eco57I	CTGAAG	2 cut(s)	396, 1272
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRII	CCWGG	2 cut(s)	73, 859
EcoT14I	CCWWGG	1 cut(s)	1145
ErhI	CCWWGG	1 cut(s)	1145
FaeI	CATG	3 cut(s)	135, 622, 1098
FalI	AAGNNNNNCTT	4 cut(s)	143, 175, 369, 401
FaqI	GGGAC	1 cut(s)	1270
FatI	CATG	3 cut(s)	131, 618, 1094
Fnu4HI	GCNGC	4 cut(s)	372, 720, 1209, 1238
FokI	GGATG	1 cut(s)	1187
Fsp4HI	GCNGC	4 cut(s)	372, 720, 1209, 1238
FspBI	CTAG	2 cut(s)	495, 1318
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	4 cut(s)	372, 720, 1209, 1238
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	342, 525
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	830
Hin1II	CATG	3 cut(s)	135, 622, 1098
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	3 cut(s)	682, 1036, 1208
Hpy166II	GTNNAC	3 cut(s)	679, 1224, 1296
Hpy188I	TCNGA	4 cut(s)	157, 230, 917, 1205
Hpy188III	TCNNGA	9 cut(s)	83, 122, 147, 313, 320, 929, 1034, 1250, 1275
Hpy8I	GTNNAC	3 cut(s)	679, 1224, 1296
HpyAV	CCTTC	5 cut(s)	91, 332, 402, 439, 1247
HpyCH4III	ACNGT	4 cut(s)	199, 239, 402, 799
HpyCH4IV	ACGT	1 cut(s)	946
HpyCH4V	TGCA	9 cut(s)	4, 20, 131, 270, 356, 679, 1055, 1088, 1224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	253, 362, 371, 728
HpyF3I	CTNAG	3 cut(s)	219, 831, 902
HpySE526I	ACGT	1 cut(s)	946
Hsp92II	CATG	3 cut(s)	135, 622, 1098
HspAI	GCGC	1 cut(s)	828
Kzo9I	GATC	4 cut(s)	100, 225, 925, 1134
LmnI	GCTCC	3 cut(s)	124, 1147, 1205
Lsp1109I	GCAGC	4 cut(s)	383, 731, 1220, 1249
LweI	GCATC	3 cut(s)	7, 772, 1060
MaeI	CTAG	2 cut(s)	495, 1318
MaeII	ACGT	1 cut(s)	946
MaeIII	GTNAC	4 cut(s)	136, 845, 959, 1313
MalI	GATC	4 cut(s)	102, 227, 927, 1136
MboI	GATC	4 cut(s)	100, 225, 925, 1134
MboII	GAAGA	6 cut(s)	49, 389, 782, 1112, 1181, 1300
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	2 cut(s)	681, 1226
MluCI	AATT	8 cut(s)	46, 177, 470, 565, 589, 964, 1029, 1103
MlyI	GAGTC	1 cut(s)	325
MmeI	TCCRAC	2 cut(s)	209, 845
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	3 cut(s)	684, 986, 1022
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	2 cut(s)	75, 861
Mva1269I	GAATGC	1 cut(s)	8
MvaI	CCWGG	2 cut(s)	75, 861
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	4 cut(s)	253, 362, 371, 728
NdeII	GATC	4 cut(s)	100, 225, 925, 1134
NlaIII	CATG	3 cut(s)	135, 622, 1098
NlaIV	GGNNCC	3 cut(s)	541, 741, 1143
NmuCI	GTSAC	2 cut(s)	845, 959
PctI	GAATGC	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	373, 721, 1210, 1239
PleI	GAGTC	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	324
Ppu21I	YACGTR	1 cut(s)	947
PpuMI	RGGWCCY	1 cut(s)	382
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	73, 859
PspGI	CCWGG	2 cut(s)	73, 859
PspN4I	GGNNCC	3 cut(s)	541, 741, 1143
PspPI	GGNCC	4 cut(s)	382, 523, 917, 1296
PspPPI	RGGWCCY	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	925
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	4 cut(s)	404, 534, 945, 1011
RsaNI	GTAC	4 cut(s)	403, 533, 944, 1010
RseI	CAYNNNNRTG	3 cut(s)	684, 986, 1022
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	4 cut(s)	372, 720, 1209, 1238
Sau3AI	GATC	4 cut(s)	100, 225, 925, 1134
Sau96I	GGNCC	4 cut(s)	382, 523, 917, 1296
SchI	GAGTC	1 cut(s)	325
ScrFI	CCNGG	2 cut(s)	75, 861
SduI	GDGCHC	2 cut(s)	681, 1226
SfaNI	GCATC	3 cut(s)	7, 772, 1060
SfcI	CTRYAG	1 cut(s)	1164
SinI	GGWCC	3 cut(s)	382, 917, 1296
SmiMI	CAYNNNNRTG	3 cut(s)	684, 986, 1022
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	494
Sse9I	AATT	8 cut(s)	46, 177, 470, 565, 589, 964, 1029, 1103
SsiI	CCGC	1 cut(s)	955
SspMI	CTAG	2 cut(s)	495, 1318
StyD4I	CCNGG	2 cut(s)	73, 859
StyI	CCWWGG	1 cut(s)	1145
TaaI	ACNGT	4 cut(s)	199, 239, 402, 799
TaiI	ACGT	1 cut(s)	949
TaqI	TCGA	2 cut(s)	652, 791
TasI	AATT	8 cut(s)	46, 177, 470, 565, 589, 964, 1029, 1103
TatI	WGTACW	1 cut(s)	1009
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	3 cut(s)	196, 269, 750
TseFI	GTSAC	2 cut(s)	845, 959
TseI	GCWGC	4 cut(s)	371, 719, 1208, 1237
Tsp45I	GTSAC	2 cut(s)	845, 959
TspDTI	ATGAA	4 cut(s)	50, 615, 902, 1170
TspGWI	ACGGA	1 cut(s)	696
TspRI	CASTG	3 cut(s)	196, 269, 750
VneI	GTGCAC	2 cut(s)	677, 1222
VpaK11BI	GGWCC	3 cut(s)	382, 917, 1296
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	4 cut(s)	470, 565, 1029, 1103
XcmI	CCANNNNNNNNNTGG	2 cut(s)	129, 1290
XspI	CTAG	2 cut(s)	495, 1318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.