RLG00000021620

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
76781780 .. 76783246
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021620

Sequence Viewer

Length: 1377 bp
ATGGCTGACACCGGTGGCATTGGTTTAACCAAGAAGAAGGATGAGAATTTCGGAGAGTGGTATTCGGAGGTTGTTGTTCACGGTGAGATGATTGAGTACTACGACATCTCAGGATGTTATATTTTGAGGCCATCGACAATGGCAATATGGGAGACCATGCAAGCATTCTTCAATGCAGAAATAAAAAAAATGAAGATTAAAAATTGCTACTTTCCTTTGTTAGTCTCCCCTGCTGTTCTGGAAAAAGAGAAGGATCATATAGCGGAGTCAGAGGTTGCTTGGGTCACAAAGTATGGAAAATCTGATTTGAAAGTGCCTATTGCAGTCCGTCCAACGAGTGAGACTGTTATGTATCCTTATTACTCAGAGTGGATTAGGGGACACCGTGACTTACCATTGAAGTTAAATCAGTGGTGCAATGTAGTTCGATGGGAGTCTAGCAATCCCACTCCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCACACAGCTTTTGCAACCAAGGAAGAGGCAGATAAAGAGGTCCTTGAGATATTGGAACTGTACAGAAGGATATATGAGGAATATTTGGCAATTCCAGTTGTGAAGGGAAGAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTACACCACAAGTGTGGAGGCTTTTGTTCCAAATACTGGCCGCAGCGTACAGGGCGCCACTTCACATTGTCTGGGTCAAAACTTTGCTAAAATGTTCGACATTACTTATGAGAATGAAAAGGGAGAAAAAACAATGATTTGGCAAAACTCTTGGGCTTATAGTACTCGAACGATTGGAGTGATGGTAATGGTGCATGGAGATGACAAAGGCTTGGTATTGCCACCAAAGGAGTTGAGTGAAGCTGGATTTCGTGTTGAGGCTGATTTGAGGGACAACTACTGGCCTGAATGGAAGCATTCACACTGGGAATTGAAAGGTGTTCCTCTAAGGATTGAAATTGGACTGAAGGATTTGGAGAAGAAACAAGTAGTCTGTGTTCGGCGTGACAACTCTGCGAAAGTGGACATTCCTATAGTCGACTTGGTCAAGGAAGTGAAAGACATGCTTGATAAAATTCAACAAAATCTCTTTGATGTTGCAAAACAAAAACGAGATGCTTCTGTCCAGGTTGCCAGAACATGGGATGAATTCACGGTAGCCTTGAGCAACAAGAAATTGATCCTGGCTCCTTGGTGTGATGAACAGGAAGTAGAAGAGGATGTCAAAGCGAGAACAAAGGGTGAAATTGGAGCAGCAATGTCACTCTGCTCTCCCTTTGACCAGCCCCAACTCCCTGAAGGGACGCTTTGCTTTGCATCCGGAAAGCCAGCAAAAAAGTGGACCTATTGGGGGAGGAGCTACTAA

Protein Analysis

459

Amino Acids

52.69

Weight (kDa)

5.91

Isoelectric Point (pI)

37.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 107 - 273 1.2e-21 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 287 - 358 8.3e-16 Anticodon binding domain
ProRS-C_1 PF09180 385 - 458 1.3e-23 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 686
AccB7I CCANNNNNTGG 2 cut(s) 668, 1152
AccI GTMKAC 1 cut(s) 1050
AccIII TCCGGA 1 cut(s) 1331
AciI CCGC 2 cut(s) 263, 673
AclWI GGATC 2 cut(s) 261, 1186
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 4 cut(s) 46, 617, 1086, 1160
AcuI CTGAAG 2 cut(s) 998, 1329
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 4 cut(s) 98, 551, 681, 796
AfiI CCNNNNNNNGG 3 cut(s) 668, 1152, 1362
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 6 cut(s) 172, 310, 400, 946, 968, 1091
AjnI CCWGG 2 cut(s) 1137, 1194
AleI CACNNNNGTG 1 cut(s) 644
AluBI AGCT 3 cut(s) 497, 875, 1371
AluI AGCT 3 cut(s) 497, 875, 1371
Alw26I GTCTC 3 cut(s) 146, 229, 335
AlwI GGATC 2 cut(s) 261, 1186
Aor13HI TCCGGA 1 cut(s) 1331
AoxI GGCC 4 cut(s) 128, 487, 670, 914
ApeKI GCWGC 2 cut(s) 675, 1265
ApoI RAATTY 4 cut(s) 46, 617, 1086, 1160
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 529, 1353
AsuHPI GGTGA 2 cut(s) 95, 1265
AvaII GGWCC 2 cut(s) 529, 1353
BanI GGYRCC 1 cut(s) 686
BbvI GCAGC 2 cut(s) 687, 1277
BccI CCATC 3 cut(s) 139, 423, 808
BciT130I CCWGG 2 cut(s) 1139, 1196
BciVI GTATCC 1 cut(s) 363
BcoDI GTCTC 3 cut(s) 146, 229, 335
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 1044
BfoI RGCGCY 1 cut(s) 690
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 3 cut(s) 673, 676, 1266
BlsI GCNGC 3 cut(s) 674, 677, 1267
BmcAI AGTACT 2 cut(s) 98, 796
Bme1390I CCNGG 2 cut(s) 1139, 1196
Bme18I GGWCC 2 cut(s) 529, 1353
BmgT120I GGNCC 2 cut(s) 529, 1353
BmiI GGNNCC 2 cut(s) 688, 1200
BmrFI CCNGG 2 cut(s) 1139, 1196
BmrI ACTGGG 1 cut(s) 946
BmsI GCATC 2 cut(s) 1117, 1337
BmuI ACTGGG 1 cut(s) 946
BpuEI CTTGAG 2 cut(s) 554, 1195
BsaHI GRCGYC 1 cut(s) 687
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 507, 1202
BsaWI WCCGGW 2 cut(s) 11, 1331
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 1152, 1362
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 584, 673, 917, 941
Bse3DI GCAATG 2 cut(s) 424, 1275
BseAI TCCGGA 1 cut(s) 1331
BseBI CCWGG 2 cut(s) 1139, 1196
BseDI CCNNGG 2 cut(s) 507, 1202
BseGI GGATG 5 cut(s) 46, 119, 1162, 1237, 1328
BseLI CCNNNNNNNGG 3 cut(s) 668, 1152, 1362
BseMI GCAATG 2 cut(s) 424, 1275
BseMII CTCAG 2 cut(s) 123, 378
BseNI ACTGG 4 cut(s) 584, 673, 917, 941
BseXI GCAGC 2 cut(s) 687, 1277
BshFI GGCC 4 cut(s) 130, 489, 672, 916
BshNI GGYRCC 1 cut(s) 686
BshTI ACCGGT 1 cut(s) 11
BsiSI CCGG 2 cut(s) 12, 1332
BslFI GGGAC 3 cut(s) 393, 917, 1327
BslI CCNNNNNNNGG 3 cut(s) 668, 1152, 1362
BsmAI GTCTC 3 cut(s) 146, 229, 335
BsmFI GGGAC 3 cut(s) 393, 917, 1327
BsmI GAATGC 2 cut(s) 164, 928
BsnI GGCC 4 cut(s) 130, 489, 672, 916
Bso31I GGTCTC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 1331
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 253, 1191
BspACI CCGC 2 cut(s) 263, 673
BspANI GGCC 4 cut(s) 130, 489, 672, 916
BspCNI CTCAG 2 cut(s) 122, 377
BspEI TCCGGA 1 cut(s) 1331
BspLI GGNNCC 2 cut(s) 688, 1200
BspPI GGATC 2 cut(s) 261, 1186
BspT107I GGYRCC 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 2 cut(s) 424, 1275
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 4 cut(s) 584, 673, 917, 941
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 507, 1202
BssMI GATC 2 cut(s) 253, 1191
BssNI GRCGYC 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 507, 1202
Bst2UI CCWGG 2 cut(s) 1139, 1196
Bst4CI ACNGT 5 cut(s) 83, 346, 386, 549, 1168
Bst6I CTCTTC 2 cut(s) 507, 1221
BstACI GRCGYC 1 cut(s) 687
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 162, 1341
BstDEI CTNAG 3 cut(s) 109, 364, 959
BstF5I GGATG 5 cut(s) 46, 119, 1162, 1237, 1328
BstH2I RGCGCY 1 cut(s) 690
BstHHI GCGC 1 cut(s) 689
BstKTI GATC 2 cut(s) 256, 1194
BstMAI GTCTC 3 cut(s) 146, 229, 335
BstMBI GATC 2 cut(s) 253, 1191
BstMWI GCNNNNNNNGC 1 cut(s) 684
BstNI CCWGG 2 cut(s) 1139, 1196
BstNSI RCATGY 1 cut(s) 1078
BstSCI CCNGG 2 cut(s) 1137, 1194
BstSFI CTRYAG 1 cut(s) 1044
BstV1I GCAGC 2 cut(s) 687, 1277
BstXI CCANNNNNNTGG 1 cut(s) 646
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 4 cut(s) 130, 489, 672, 916
BtsCI GGATG 5 cut(s) 46, 119, 1162, 1237, 1328
BtsIMutI CAGTG 2 cut(s) 416, 934
Cac8I GCNNGC 2 cut(s) 162, 1341
CfoI GCGC 1 cut(s) 689
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 529, 1353
CseI GACGC 1 cut(s) 1324
Csp6I GTAC 4 cut(s) 97, 550, 680, 795
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 4 cut(s) 157, 827, 1075, 1152
CviQI GTAC 4 cut(s) 97, 550, 680, 795
DdeI CTNAG 3 cut(s) 109, 364, 959
DinI GGCGCC 1 cut(s) 688
DpnI GATC 2 cut(s) 255, 1193
DpnII GATC 2 cut(s) 253, 1191
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 507, 1221
EarI CTCTTC 2 cut(s) 507, 1221
Eco130I CCWWGG 2 cut(s) 507, 1202
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 529, 1353
Eco57I CTGAAG 2 cut(s) 998, 1329
EcoO109I RGGNCCY 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 1160
EcoRII CCWGG 2 cut(s) 1137, 1194
EcoT14I CCWWGG 2 cut(s) 507, 1202
EgeI GGCGCC 1 cut(s) 688
EheI GGCGCC 1 cut(s) 688
ErhI CCWWGG 2 cut(s) 507, 1202
FaeI CATG 4 cut(s) 160, 830, 1078, 1155
FalI AAGNNNNNCTT 6 cut(s) 516, 548, 1062, 1094, 1302, 1334
FaqI GGGAC 3 cut(s) 393, 917, 1327
FatI CATG 4 cut(s) 156, 826, 1074, 1151
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 3 cut(s) 673, 676, 1266
FokI GGATG 5 cut(s) 53, 126, 1169, 1244, 1315
Fsp4HI GCNGC 3 cut(s) 673, 676, 1266
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 688
GluI GCNGC 3 cut(s) 673, 676, 1266
HaeII RGCGCY 1 cut(s) 690
HaeIII GGCC 4 cut(s) 130, 489, 672, 916
HapII CCGG 2 cut(s) 12, 1332
HgaI GACGC 1 cut(s) 1324
HhaI GCGC 1 cut(s) 689
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 4 cut(s) 160, 830, 1078, 1155
Hin6I GCGC 1 cut(s) 687
HinP1I GCGC 1 cut(s) 687
HincII GTYRAC 1 cut(s) 1051
HindII GTYRAC 1 cut(s) 1051
HinfI GANTC 3 cut(s) 266, 434, 463
HpaII CCGG 2 cut(s) 12, 1332
HphI GGTGA 2 cut(s) 95, 1265
Hpy166II GTNNAC 4 cut(s) 79, 1036, 1051, 1353
Hpy188I TCNGA 5 cut(s) 53, 67, 271, 304, 367
Hpy188III TCNNGA 5 cut(s) 111, 239, 460, 467, 1332
Hpy8I GTNNAC 4 cut(s) 79, 1036, 1051, 1353
HpyAV CCTTC 7 cut(s) 31, 244, 479, 549, 586, 973, 1304
HpyCH4III ACNGT 5 cut(s) 83, 346, 386, 549, 1168
HpyCH4V TGCA 8 cut(s) 160, 176, 323, 417, 503, 826, 1112, 1328
HpyF10VI GCNNNNNNNGC 1 cut(s) 684
HpyF3I CTNAG 3 cut(s) 109, 364, 959
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 4 cut(s) 160, 830, 1078, 1155
HspAI GCGC 1 cut(s) 687
KasI GGCGCC 1 cut(s) 686
Kpn2I TCCGGA 1 cut(s) 1331
Kzo9I GATC 2 cut(s) 253, 1191
LmnI GCTCC 3 cut(s) 1204, 1262, 1368
Lsp1109I GCAGC 2 cut(s) 687, 1277
LweI GCATC 2 cut(s) 1117, 1337
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 4 cut(s) 283, 386, 1016, 1272
MalI GATC 2 cut(s) 255, 1193
MboI GATC 2 cut(s) 253, 1191
MboII GAAGA 7 cut(s) 46, 160, 205, 524, 609, 1003, 1238
Mly113I GGCGCC 1 cut(s) 687
MlyI GAGTC 3 cut(s) 275, 443, 472
MmeI TCCRAC 1 cut(s) 356
MroI TCCGGA 1 cut(s) 1331
MseI TTAA 3 cut(s) 26, 198, 404
MslI CAYNNNNRTG 2 cut(s) 644, 831
MspI CCGG 2 cut(s) 12, 1332
MspR9I CCNGG 2 cut(s) 1139, 1196
Mva1269I GAATGC 2 cut(s) 164, 928
MvaI CCWGG 2 cut(s) 1139, 1196
MwoI GCNNNNNNNGC 1 cut(s) 684
NarI GGCGCC 1 cut(s) 687
NdeII GATC 2 cut(s) 253, 1191
NlaIII CATG 4 cut(s) 160, 830, 1078, 1155
NlaIV GGNNCC 2 cut(s) 688, 1200
NmuCI GTSAC 4 cut(s) 283, 386, 1016, 1272
NspI RCATGY 1 cut(s) 1078
OliI CACNNNNGTG 1 cut(s) 644
PctI GAATGC 2 cut(s) 164, 928
PflFI GACNNNGTC 1 cut(s) 1055
PflMI CCANNNNNTGG 2 cut(s) 668, 1152
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 674, 677, 1267
PleI GAGTC 3 cut(s) 274, 442, 471
PluTI GGCGCC 1 cut(s) 690
PpsI GAGTC 3 cut(s) 274, 442, 471
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 2 cut(s) 1137, 1194
PspGI CCWGG 2 cut(s) 1137, 1194
PspN4I GGNNCC 2 cut(s) 688, 1200
PspPI GGNCC 2 cut(s) 529, 1353
PspPPI RGGWCCY 1 cut(s) 529
PsrI GAACNNNNNNTAC 2 cut(s) 993, 1025
PsyI GACNNNGTC 1 cut(s) 1055
RsaI GTAC 4 cut(s) 98, 551, 681, 796
RsaNI GTAC 4 cut(s) 97, 550, 680, 795
RseI CAYNNNNRTG 2 cut(s) 644, 831
SalI GTCGAC 1 cut(s) 1049
SaqAI TTAA 3 cut(s) 26, 198, 404
SatI GCNGC 3 cut(s) 673, 676, 1266
Sau3AI GATC 2 cut(s) 253, 1191
Sau96I GGNCC 2 cut(s) 529, 1353
ScaI AGTACT 2 cut(s) 98, 796
SchI GAGTC 3 cut(s) 275, 443, 472
ScrFI CCNGG 2 cut(s) 1139, 1196
SetI ASST 9 cut(s) 72, 276, 499, 531, 877, 952, 1143, 1358, 1373
SfaNI GCATC 2 cut(s) 1117, 1337
SfcI CTRYAG 1 cut(s) 1044
SfoI GGCGCC 1 cut(s) 688
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 2 cut(s) 529, 1353
SmiMI CAYNNNNRTG 2 cut(s) 644, 831
SmlI CTYRAG 2 cut(s) 533, 1174
SmoI CTYRAG 2 cut(s) 533, 1174
SsiI CCGC 2 cut(s) 263, 673
SspDI GGCGCC 1 cut(s) 686
SspI AATATT 1 cut(s) 572
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 1137, 1194
StyI CCWWGG 2 cut(s) 507, 1202
TaaI ACNGT 5 cut(s) 83, 346, 386, 549, 1168
TaqI TCGA 5 cut(s) 134, 427, 729, 799, 1050
TatI WGTACW 3 cut(s) 96, 549, 794
TauI GCSGC 1 cut(s) 675
Tru1I TTAA 3 cut(s) 26, 198, 404
Tru9I TTAA 3 cut(s) 26, 198, 404
TscAI CASTG 2 cut(s) 416, 941
TseFI GTSAC 4 cut(s) 283, 386, 1016, 1272
TseI GCWGC 2 cut(s) 675, 1265
Tsp45I GTSAC 4 cut(s) 283, 386, 1016, 1272
TspDTI ATGAA 4 cut(s) 206, 762, 1173, 1227
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 2 cut(s) 416, 941
Tth111I GACNNNGTC 1 cut(s) 1055
Van91I CCANNNNNTGG 2 cut(s) 668, 1152
VpaK11BI GGWCC 2 cut(s) 529, 1353
XapI RAATTY 4 cut(s) 46, 617, 1086, 1160
XceI RCATGY 1 cut(s) 1078
XcmI CCANNNNNNNNNTGG 1 cut(s) 1347
XmiI GTMKAC 1 cut(s) 1050
XspI CTAG 1 cut(s) 438
ZrmI AGTACT 2 cut(s) 98, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.