Rroxscaffold_2G00084890

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
7333763 .. 7335226
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084890.1

Sequence Viewer

Length: 1320 bp
ATGGCTGACACCGGTGGCATTGGTTTAACCAAGAAGAAGGATGAGAATTTCGGAGAGTGGTATTCGGAGGTTGTTGTTCGCGGTGAGATGATTGAGTACTACGACATCTCAGGATTCTCCCCTGCTGTTCTGGAAAAAGAGAAGGATCATATAGCGGAGTCAGAGGTAGCTTGGGTCACAAAGTATGGAAAATCTGATTTGAAAGTGCCTATTGCAGTCCGTCCAACGAGTGAGACTGTTTTGTATCCTTATTACTCAGAGTGGATTAGGGGACACCGTGACTTACCATTGAAGTTAAATCAGTGGTGCAATGTAGTTCGATGGGAGTCTAGCAATCCCACTCCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCACACAGCTTTTGCAACAAAGGAAGAGGCAGATAAAGAGGTCCTTGAGATATTGGAACTTTGTGAAGGGAAAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTACACCACTAGTGTGGAGGCTTTTGTTCCAAATACTGGCCGCAGCGTACAAGGCGCCACTTCACATTGTCTGGGTCAAAACTTTGCTAAAATGTTCGACATTACTTATGAGAATGAAAAGGGAGAAAAAGCAATGATTTGGCAAAACTCTTGGGCTTATAGTACTCGAACGATTGGAGTGATGGTAATGGTGCATGGAGATGACAAAGGCTTGGTATTGCCACCAAAGGTAGCATCTATCCAGGCCATTGTGATTCCAGTGCCTTTCAAGGACGCTGATACACAAGCCATATTTGATGCCTGCTCGAAAACTGTGGAGGAGTTGAGTGAAGCTGGATTTCGTGTTGAGGCTGATTTGAGGGACAACTACTTACCTGAATGGAAGCATTCACACTGGGAATTGAAAGGTGTTCCTCTAAGGATTGAAATTGGACTAAAGGATTTGGAGAAGAAACAAGTAGTCTGTGTTCGGCGTGACAACTCTGCGAAAGTGGACATTCCTATAGTCGACTTGGTCAAGGAAGTGAAACACATGCTTGATAAAATTCAACAAAATCTCTTTGATGTTGCAAAACAAAAACGAGATGCTTCTGTCCAGGTTGCCAGAACATGGGATGAATTCACGGTAGCCTTGAGCAACAAGAAATTGATCCTGGCTCCTTGGTGTGATGAACAGGAAGTAGAAGAGGATGTCAAAGCGAGAACAAATGGTGAAATTGGAGCAGCAATGTCACTCTGCTCTCCCTTTGACCAGCCCCAACTCCCTGAAGGGACGCTTTGCTTTGCATCCGGAAAGCCAGCAAAAAAGTGGACCTACTGGGGAAGGAGCTACTAA

Protein Analysis

439

Amino Acids

49.79

Weight (kDa)

5.38

Isoelectric Point (pI)

35.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 71 - 224 6.7e-15 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 243 - 338 4e-20 Anticodon binding domain
ProRS-C_1 PF09180 366 - 439 1.1e-23 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 539
AccB7I CCANNNNNTGG 2 cut(s) 521, 1095
AccI GTMKAC 1 cut(s) 993
AccII CGCG 1 cut(s) 81
AccIII TCCGGA 1 cut(s) 1274
AciI CCGC 3 cut(s) 81, 155, 526
AclWI GGATC 2 cut(s) 153, 1129
AcoI YGGCCR 1 cut(s) 523
AcsI RAATTY 4 cut(s) 46, 470, 1029, 1103
AcuI CTGAAG 1 cut(s) 1272
AcyI GRCGYC 1 cut(s) 540
AfaI GTAC 3 cut(s) 98, 534, 649
AfiI CCNNNNNNNGG 2 cut(s) 521, 1095
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 6 cut(s) 202, 292, 754, 889, 911, 1034
AhlI ACTAGT 1 cut(s) 494
AjnI CCWGG 3 cut(s) 726, 1080, 1137
AleI CACNNNNGTG 1 cut(s) 497
AluBI AGCT 4 cut(s) 170, 389, 818, 1314
AluI AGCT 4 cut(s) 170, 389, 818, 1314
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 2 cut(s) 153, 1129
Aor13HI TCCGGA 1 cut(s) 1274
AoxI GGCC 3 cut(s) 379, 523, 729
ApeKI GCWGC 2 cut(s) 528, 1208
ApoI RAATTY 4 cut(s) 46, 470, 1029, 1103
AsiGI ACCGGT 1 cut(s) 11
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 421, 1296
AsuHPI GGTGA 2 cut(s) 95, 1208
AvaII GGWCC 2 cut(s) 421, 1296
BanI GGYRCC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 540, 1220
BccI CCATC 2 cut(s) 315, 661
BciT130I CCWGG 3 cut(s) 728, 1082, 1139
BciVI GTATCC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 227
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 2 cut(s) 330, 495
BfmI CTRYAG 1 cut(s) 987
BfoI RGCGCY 1 cut(s) 543
BfuI GTATCC 1 cut(s) 255
BisI GCNGC 3 cut(s) 526, 529, 1209
BlsI GCNGC 3 cut(s) 527, 530, 1210
BmcAI AGTACT 2 cut(s) 98, 649
Bme1390I CCNGG 3 cut(s) 728, 1082, 1139
Bme18I GGWCC 2 cut(s) 421, 1296
BmgT120I GGNCC 2 cut(s) 421, 1296
BmiI GGNNCC 2 cut(s) 541, 1143
BmrFI CCNGG 3 cut(s) 728, 1082, 1139
BmrI ACTGGG 2 cut(s) 889, 1312
BmsI GCATC 4 cut(s) 728, 772, 1060, 1280
BmuI ACTGGG 2 cut(s) 889, 1312
BpuEI CTTGAG 2 cut(s) 446, 1138
BsaHI GRCGYC 1 cut(s) 540
BsaJI CCNNGG 1 cut(s) 1145
BsaWI WCCGGW 2 cut(s) 11, 1274
BsaXI ACNNNNNCTCC 2 cut(s) 654, 684
Bsc4I CCNNNNNNNGG 2 cut(s) 521, 1095
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 4 cut(s) 526, 743, 884, 1307
Bse3DI GCAATG 3 cut(s) 316, 624, 1218
BseAI TCCGGA 1 cut(s) 1274
BseBI CCWGG 3 cut(s) 728, 1082, 1139
BseDI CCNNGG 1 cut(s) 1145
BseGI GGATG 4 cut(s) 46, 1105, 1180, 1271
BseLI CCNNNNNNNGG 2 cut(s) 521, 1095
BseMI GCAATG 3 cut(s) 316, 624, 1218
BseMII CTCAG 2 cut(s) 123, 270
BseNI ACTGG 4 cut(s) 526, 743, 884, 1307
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 2 cut(s) 540, 1220
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 3 cut(s) 381, 525, 731
BshNI GGYRCC 1 cut(s) 539
BshTI ACCGGT 1 cut(s) 11
BsiSI CCGG 2 cut(s) 12, 1275
BslFI GGGAC 3 cut(s) 285, 860, 1270
BslI CCNNNNNNNGG 2 cut(s) 521, 1095
BsmAI GTCTC 1 cut(s) 227
BsmFI GGGAC 3 cut(s) 285, 860, 1270
BsmI GAATGC 1 cut(s) 871
BsnI GGCC 3 cut(s) 381, 525, 731
Bsp13I TCCGGA 1 cut(s) 1274
Bsp143I GATC 2 cut(s) 145, 1134
BspACI CCGC 3 cut(s) 81, 155, 526
BspANI GGCC 3 cut(s) 381, 525, 731
BspCNI CTCAG 2 cut(s) 122, 269
BspEI TCCGGA 1 cut(s) 1274
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 541, 1143
BspPI GGATC 2 cut(s) 153, 1129
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 3 cut(s) 316, 624, 1218
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 4 cut(s) 526, 743, 884, 1307
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 1145
BssMI GATC 2 cut(s) 145, 1134
BssNI GRCGYC 1 cut(s) 540
BssT1I CCWWGG 1 cut(s) 1145
Bst2UI CCWGG 3 cut(s) 728, 1082, 1139
Bst4CI ACNGT 4 cut(s) 238, 278, 799, 1111
Bst6I CTCTTC 2 cut(s) 399, 1164
BstACI GRCGYC 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 787, 1284
BstDEI CTNAG 3 cut(s) 109, 256, 902
BstF5I GGATG 4 cut(s) 46, 1105, 1180, 1271
BstFNI CGCG 1 cut(s) 81
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 2 cut(s) 148, 1137
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 2 cut(s) 145, 1134
BstMWI GCNNNNNNNGC 1 cut(s) 537
BstNI CCWGG 3 cut(s) 728, 1082, 1139
BstNSI RCATGY 1 cut(s) 1021
BstSCI CCNGG 3 cut(s) 726, 1080, 1137
BstSFI CTRYAG 1 cut(s) 987
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 540, 1220
BstXI CCANNNNNNTGG 1 cut(s) 499
BsuI GTATCC 1 cut(s) 255
BsuRI GGCC 3 cut(s) 381, 525, 731
BtsCI GGATG 4 cut(s) 46, 1105, 1180, 1271
BtsIMutI CAGTG 3 cut(s) 308, 750, 877
Cac8I GCNNGC 2 cut(s) 787, 1284
CfoI GCGC 1 cut(s) 542
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 421, 1296
CseI GACGC 2 cut(s) 767, 1267
Csp6I GTAC 3 cut(s) 97, 533, 648
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 3 cut(s) 680, 1018, 1095
CviQI GTAC 3 cut(s) 97, 533, 648
DdeI CTNAG 3 cut(s) 109, 256, 902
DinI GGCGCC 1 cut(s) 541
DpnI GATC 2 cut(s) 147, 1136
DpnII GATC 2 cut(s) 145, 1134
EaeI YGGCCR 1 cut(s) 523
Eam1104I CTCTTC 2 cut(s) 399, 1164
EarI CTCTTC 2 cut(s) 399, 1164
Eco130I CCWWGG 1 cut(s) 1145
Eco47I GGWCC 2 cut(s) 421, 1296
Eco57I CTGAAG 1 cut(s) 1272
EcoO109I RGGNCCY 1 cut(s) 421
EcoRI GAATTC 1 cut(s) 1103
EcoRII CCWGG 3 cut(s) 726, 1080, 1137
EcoT14I CCWWGG 1 cut(s) 1145
EgeI GGCGCC 1 cut(s) 541
EheI GGCGCC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 1145
FaeI CATG 3 cut(s) 683, 1021, 1098
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 1245, 1277
FaqI GGGAC 3 cut(s) 285, 860, 1270
FatI CATG 3 cut(s) 679, 1017, 1094
FblI GTMKAC 1 cut(s) 993
Fnu4HI GCNGC 3 cut(s) 526, 529, 1209
FokI GGATG 4 cut(s) 53, 1112, 1187, 1258
Fsp4HI GCNGC 3 cut(s) 526, 529, 1209
FspBI CTAG 2 cut(s) 330, 495
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 526, 529, 1209
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 3 cut(s) 381, 525, 731
HapII CCGG 2 cut(s) 12, 1275
HgaI GACGC 2 cut(s) 767, 1267
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 540
Hin1II CATG 3 cut(s) 683, 1021, 1098
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 994
HindII GTYRAC 1 cut(s) 994
HinfI GANTC 5 cut(s) 114, 158, 326, 355, 739
HpaII CCGG 2 cut(s) 12, 1275
HphI GGTGA 2 cut(s) 95, 1208
Hpy166II GTNNAC 3 cut(s) 979, 994, 1296
Hpy188I TCNGA 5 cut(s) 53, 67, 163, 196, 259
Hpy188III TCNNGA 5 cut(s) 111, 131, 352, 359, 1275
Hpy8I GTNNAC 3 cut(s) 979, 994, 1296
HpyAV CCTTC 6 cut(s) 31, 136, 371, 440, 1247, 1302
HpyCH4III ACNGT 4 cut(s) 238, 278, 799, 1111
HpyCH4V TGCA 6 cut(s) 215, 309, 395, 679, 1055, 1271
HpyF10VI GCNNNNNNNGC 1 cut(s) 537
HpyF3I CTNAG 3 cut(s) 109, 256, 902
Hsp92I GRCGYC 1 cut(s) 540
Hsp92II CATG 3 cut(s) 683, 1021, 1098
HspAI GCGC 1 cut(s) 540
KasI GGCGCC 1 cut(s) 539
Kpn2I TCCGGA 1 cut(s) 1274
Kzo9I GATC 2 cut(s) 145, 1134
LmnI GCTCC 3 cut(s) 1147, 1205, 1311
Lsp1109I GCAGC 2 cut(s) 540, 1220
LweI GCATC 4 cut(s) 728, 772, 1060, 1280
MaeI CTAG 2 cut(s) 330, 495
MaeIII GTNAC 4 cut(s) 175, 278, 959, 1215
MalI GATC 2 cut(s) 147, 1136
MboI GATC 2 cut(s) 145, 1134
MboII GAAGA 4 cut(s) 46, 416, 946, 1181
MluCI AATT 8 cut(s) 46, 470, 884, 912, 1029, 1103, 1130, 1200
Mly113I GGCGCC 1 cut(s) 540
MlyI GAGTC 3 cut(s) 167, 335, 364
MmeI TCCRAC 1 cut(s) 248
MroI TCCGGA 1 cut(s) 1274
MseI TTAA 2 cut(s) 26, 296
MslI CAYNNNNRTG 2 cut(s) 497, 684
MspI CCGG 2 cut(s) 12, 1275
MspR9I CCNGG 3 cut(s) 728, 1082, 1139
Mva1269I GAATGC 1 cut(s) 871
MvaI CCWGG 3 cut(s) 728, 1082, 1139
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 537
NarI GGCGCC 1 cut(s) 540
NdeII GATC 2 cut(s) 145, 1134
NlaIII CATG 3 cut(s) 683, 1021, 1098
NlaIV GGNNCC 2 cut(s) 541, 1143
NmuCI GTSAC 4 cut(s) 175, 278, 959, 1215
NspI RCATGY 1 cut(s) 1021
OliI CACNNNNGTG 1 cut(s) 497
PctI GAATGC 1 cut(s) 871
PfeI GAWTC 2 cut(s) 114, 739
PflFI GACNNNGTC 1 cut(s) 998
PflMI CCANNNNNTGG 2 cut(s) 521, 1095
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 527, 530, 1210
PleI GAGTC 3 cut(s) 166, 334, 363
PluTI GGCGCC 1 cut(s) 543
PpsI GAGTC 3 cut(s) 166, 334, 363
PpuMI RGGWCCY 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 421
Psp6I CCWGG 3 cut(s) 726, 1080, 1137
PspGI CCWGG 3 cut(s) 726, 1080, 1137
PspN4I GGNNCC 2 cut(s) 541, 1143
PspPI GGNCC 2 cut(s) 421, 1296
PspPPI RGGWCCY 1 cut(s) 421
PsrI GAACNNNNNNTAC 2 cut(s) 936, 968
PsyI GACNNNGTC 1 cut(s) 998
RsaI GTAC 3 cut(s) 98, 534, 649
RsaNI GTAC 3 cut(s) 97, 533, 648
RseI CAYNNNNRTG 2 cut(s) 497, 684
SalI GTCGAC 1 cut(s) 992
SaqAI TTAA 2 cut(s) 26, 296
SatI GCNGC 3 cut(s) 526, 529, 1209
Sau3AI GATC 2 cut(s) 145, 1134
Sau96I GGNCC 2 cut(s) 421, 1296
ScaI AGTACT 2 cut(s) 98, 649
SchI GAGTC 3 cut(s) 167, 335, 364
ScrFI CCNGG 3 cut(s) 728, 1082, 1139
SfaNI GCATC 4 cut(s) 728, 772, 1060, 1280
SfcI CTRYAG 1 cut(s) 987
SfoI GGCGCC 1 cut(s) 541
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 2 cut(s) 421, 1296
SmiMI CAYNNNNRTG 2 cut(s) 497, 684
SmlI CTYRAG 2 cut(s) 425, 1117
SmoI CTYRAG 2 cut(s) 425, 1117
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 8 cut(s) 46, 470, 884, 912, 1029, 1103, 1130, 1200
SsiI CCGC 3 cut(s) 81, 155, 526
SspDI GGCGCC 1 cut(s) 539
SspMI CTAG 2 cut(s) 330, 495
StyD4I CCNGG 3 cut(s) 726, 1080, 1137
StyI CCWWGG 1 cut(s) 1145
TaaI ACNGT 4 cut(s) 238, 278, 799, 1111
TaqI TCGA 5 cut(s) 319, 582, 652, 791, 993
TasI AATT 8 cut(s) 46, 470, 884, 912, 1029, 1103, 1130, 1200
TatI WGTACW 2 cut(s) 96, 647
TauI GCSGC 1 cut(s) 528
TfiI GAWTC 2 cut(s) 114, 739
Tru1I TTAA 2 cut(s) 26, 296
Tru9I TTAA 2 cut(s) 26, 296
TscAI CASTG 3 cut(s) 308, 750, 884
TseFI GTSAC 4 cut(s) 175, 278, 959, 1215
TseI GCWGC 2 cut(s) 528, 1208
Tsp45I GTSAC 4 cut(s) 175, 278, 959, 1215
TspDTI ATGAA 3 cut(s) 615, 1116, 1170
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 3 cut(s) 308, 750, 884
Tth111I GACNNNGTC 1 cut(s) 998
Van91I CCANNNNNTGG 2 cut(s) 521, 1095
VpaK11BI GGWCC 2 cut(s) 421, 1296
XapI RAATTY 4 cut(s) 46, 470, 1029, 1103
XceI RCATGY 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 1 cut(s) 1290
XmiI GTMKAC 1 cut(s) 993
XspI CTAG 2 cut(s) 330, 495
ZrmI AGTACT 2 cut(s) 98, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.