RLG00000031971

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Forward (+)
9920505 .. 9921975
1471 bp
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UTR
Exon/CDS
Intron
RLM00000031971

Sequence Viewer

Length: 1281 bp
ATGGCTGGCCTAGGTCTTTCCTATAGGAAGGATGAGAATTTCGGAGAGTGGTATCGTCAGGTTCTTCTTAATGCCGACGTGATTGGCTACACTGATGTCTCCGGTTGTTATATCATAAGGCACTGGGCGATGAAAATATGGGAGAATATGAAAGCATTTTTCGAAGCAGAAACAGAGGCAATGGAGTTAGAATCTTGCACATACCCTCTCTTTGTAACCGCTGCCTCTTTGGAACGAGAAAAGAGTCACATAAAGGGCTTCACTCCTGAGGTCGCTTGGGTCACAAAGGCCGGAGAATCAGATTTGAATGTGTCTCTTGCAATCCGACCAACAAGCGAGGCCATCGTGTATCCAAATTTCTCTAGAACAATCAGGAGACACCTTGACTTGCCATACAAGCAAACTCAGTGGGTGAATGCTGTTCGTTGGGAGCACAATCCTACTCCATTTATCAGGAGTAAAGAGTTTCTTTGGCAAGAAGGCCACCCTGCTTTTGCAACCAAGGAAGACGCAGATCATGAGGTGCAGGAGATGTTGGAGCTGTACAGAAAGATAAATGAGGAATATTTGGCGGTTCCAGTTGTGAAGGGACAGAAGACCGAGCTTGAGAAATTCGCCGGTGCTCTTTACACCACCAGTGTGGAGGCTTTTATTCCTAATGCCGGCCGCGGTATAGAAGGTGCAACCTCACATTGTTTGGCTCAAAATTTTGCTAAAATGTTTGACATCACGTTTGAGAATGAAATGGAAGAAAAAGGCCATGGTTTGGCAAAACTCTTGGGCTTACACCACTCAAACGATTGGAGTGATGGTGATGAAGCCATATTGGAGGCCTGCCGGAAAACTTTAGACAACTTGAAAAAAAAGCCGGACAGAAATCAAGTGCGGTTCGTTCGTCGGGACAACTCCGAAAAAGTGGACGTTCCTCTGAACAATGATTTGGTTGAGCGAGTAAAGGAGACGTTGGATAGAATTCAGCAAAACATGTTTGATGTTGCAAGGGAAAAACGAGATGCTTGTATCCAAGTTGCAAGGACATGGGAGGAATTTACGGAAGCTCTAAAGCAAAAGAAAATGATCTTGGCTCCTTGGTGTGACGAAAAGGATGTGGAAGAGGATGTGAAAAAAGGAACCAAGGATGAAGGTGAAATGGGAGCAGCTAAATCGCTCTGCACCCCATTTGAGCAGCCTGAACTTGCTGAAGGGACACTTTGCCTCTGGAAAGCCAGCAAGGAAGTGGACCTAGTGGGGAAGGACTTACTAGAAGATACGAAGGGTTGA

Protein Analysis

427

Amino Acids

48.84

Weight (kDa)

5.19

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 100 - 252 7.1e-13 tRNA synthetase class II core domain (G, H, P, S and T)
ProRS-C_1 PF09180 347 - 407 2.7e-14 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 766
AccII CGCG 1 cut(s) 669
AciI CCGC 5 cut(s) 219, 572, 667, 669, 886
AcoI YGGCCR 1 cut(s) 664
AcsI RAATTY 6 cut(s) 37, 355, 611, 706, 972, 1046
AcuI CTGAAG 1 cut(s) 1221
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 2 cut(s) 662, 766
AflIII ACRYGT 1 cut(s) 984
AgsI TTSAA 2 cut(s) 307, 859
AjiI CACGTC 1 cut(s) 79
AjuI GAANNNNNNNTTGG 4 cut(s) 923, 955, 1064, 1096
AleI CACNNNNGTG 1 cut(s) 638
AluBI AGCT 4 cut(s) 541, 604, 1058, 1160
AluI AGCT 4 cut(s) 541, 604, 1058, 1160
Alw21I GWGCWC 2 cut(s) 435, 625
Alw26I GTCTC 4 cut(s) 103, 318, 370, 953
AoxI GGCC 7 cut(s) 7, 288, 339, 481, 664, 757, 831
ApeKI GCWGC 3 cut(s) 221, 1157, 1186
ApoI RAATTY 6 cut(s) 37, 355, 611, 706, 972, 1046
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
AspA2I CCTAGG 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 1240
AsuHPI GGTGA 3 cut(s) 424, 824, 1157
AsuII TTCGAA 1 cut(s) 162
AvaII GGWCC 1 cut(s) 1240
AvrII CCTAGG 1 cut(s) 10
AxyI CCTNAGG 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 513, 602
Bbv12I GWGCWC 2 cut(s) 435, 625
BbvI GCAGC 3 cut(s) 208, 1169, 1198
BccI CCATC 2 cut(s) 350, 803
BcgI CGANNNNNNTGC 2 cut(s) 1146, 1180
BciVI GTATCC 2 cut(s) 360, 1031
BcoDI GTCTC 4 cut(s) 103, 318, 370, 953
BfaI CTAG 4 cut(s) 11, 363, 1244, 1262
BfmI CTRYAG 1 cut(s) 22
BfuI GTATCC 2 cut(s) 360, 1031
BisI GCNGC 4 cut(s) 222, 667, 1158, 1187
BlnI CCTAGG 1 cut(s) 10
BlsI GCNGC 4 cut(s) 223, 668, 1159, 1188
Bme18I GGWCC 1 cut(s) 1240
BmgBI CACGTC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 1240
BmiI GGNNCC 3 cut(s) 576, 1086, 1132
BmrI ACTGGG 1 cut(s) 133
BmsI GCATC 1 cut(s) 1003
BmuI ACTGGG 1 cut(s) 133
BpiI GAAGAC 2 cut(s) 513, 602
Bpu14I TTCGAA 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 626
BsaJI CCNNGG 6 cut(s) 10, 501, 667, 760, 1088, 1134
BsaWI WCCGGW 1 cut(s) 101
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 2 cut(s) 662, 766
Bse118I RCCGGY 2 cut(s) 617, 662
Bse1I ACTGG 3 cut(s) 128, 578, 636
Bse21I CCTNAGG 1 cut(s) 267
Bse3DI GCAATG 1 cut(s) 186
BseDI CCNNGG 6 cut(s) 10, 501, 667, 760, 1088, 1134
BseGI GGATG 4 cut(s) 37, 1111, 1123, 1144
BseLI CCNNNNNNNGG 2 cut(s) 662, 766
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 2 cut(s) 258, 419
BseNI ACTGG 3 cut(s) 128, 578, 636
BseX3I CGGCCG 1 cut(s) 664
BseXI GCAGC 3 cut(s) 208, 1169, 1198
BsgI GTGCAG 2 cut(s) 545, 1156
Bsh1236I CGCG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 667
BshFI GGCC 7 cut(s) 9, 290, 341, 483, 666, 759, 833
BsiEI CGRYCG 1 cut(s) 667
BsiHKAI GWGCWC 2 cut(s) 435, 625
BsiSI CCGG 6 cut(s) 102, 291, 618, 663, 838, 869
BslFI GGGAC 3 cut(s) 603, 914, 1219
BslI CCNNNNNNNGG 2 cut(s) 662, 766
BsmAI GTCTC 4 cut(s) 103, 318, 370, 953
BsmBI CGTCTC 1 cut(s) 953
BsmFI GGGAC 3 cut(s) 603, 914, 1219
BsmI GAATGC 1 cut(s) 421
BsnI GGCC 7 cut(s) 9, 290, 341, 483, 666, 759, 833
Bsp119I TTCGAA 1 cut(s) 162
Bsp1286I GDGCHC 2 cut(s) 435, 625
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 2 cut(s) 514, 1077
Bsp19I CCATGG 1 cut(s) 760
BspACI CCGC 5 cut(s) 219, 572, 667, 669, 886
BspANI GGCC 7 cut(s) 9, 290, 341, 483, 666, 759, 833
BspCNI CTCAG 2 cut(s) 259, 418
BspFNI CGCG 1 cut(s) 669
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 3 cut(s) 576, 1086, 1132
BspT104I TTCGAA 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 617, 662
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 3 cut(s) 128, 578, 636
BssAI RCCGGY 2 cut(s) 617, 662
BssECI CCNNGG 6 cut(s) 10, 501, 667, 760, 1088, 1134
BssMI GATC 2 cut(s) 514, 1077
BssT1I CCWWGG 5 cut(s) 10, 501, 760, 1088, 1134
Bst6I CTCTTC 1 cut(s) 1107
BstAUI TGTACA 1 cut(s) 543
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 4 cut(s) 7, 664, 835, 1228
BstDEI CTNAG 2 cut(s) 267, 405
BstDSI CCRYGG 2 cut(s) 667, 760
BstF5I GGATG 4 cut(s) 37, 1111, 1123, 1144
BstFNI CGCG 1 cut(s) 669
BstKTI GATC 2 cut(s) 517, 1080
BstMAI GTCTC 4 cut(s) 103, 318, 370, 953
BstMBI GATC 2 cut(s) 514, 1077
BstMCI CGRYCG 1 cut(s) 667
BstMWI GCNNNNNNNGC 1 cut(s) 397
BstNSI RCATGY 1 cut(s) 988
BstSFI CTRYAG 1 cut(s) 22
BstUI CGCG 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 208, 1169, 1198
BstV2I GAAGAC 2 cut(s) 513, 602
BstXI CCANNNNNNTGG 1 cut(s) 640
BstZI CGGCCG 1 cut(s) 664
Bsu36I CCTNAGG 1 cut(s) 267
BsuI GTATCC 2 cut(s) 360, 1031
BsuRI GGCC 7 cut(s) 9, 290, 341, 483, 666, 759, 833
BtgI CCRYGG 2 cut(s) 667, 760
BtgZI GCGATG 1 cut(s) 143
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 4 cut(s) 37, 1111, 1123, 1144
BtsIMutI CAGTG 4 cut(s) 90, 121, 413, 643
Cac8I GCNNGC 4 cut(s) 7, 664, 835, 1228
CciI TCATGA 1 cut(s) 517
Cfr10I RCCGGY 2 cut(s) 617, 662
Cfr13I GGNCC 1 cut(s) 1240
Cfr42I CCGCGG 1 cut(s) 670
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 389, 424
CviAII CATG 4 cut(s) 518, 761, 985, 1038
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 2 cut(s) 267, 405
DpnI GATC 2 cut(s) 516, 1079
DpnII GATC 2 cut(s) 514, 1077
EaeI YGGCCR 1 cut(s) 664
EagI CGGCCG 1 cut(s) 664
Eam1104I CTCTTC 1 cut(s) 1107
EarI CTCTTC 1 cut(s) 1107
EclXI CGGCCG 1 cut(s) 664
Eco130I CCWWGG 5 cut(s) 10, 501, 760, 1088, 1134
Eco147I AGGCCT 1 cut(s) 833
Eco47I GGWCC 1 cut(s) 1240
Eco52I CGGCCG 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 1221
Eco81I CCTNAGG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 972
EcoT14I CCWWGG 5 cut(s) 10, 501, 760, 1088, 1134
ErhI CCWWGG 5 cut(s) 10, 501, 760, 1088, 1134
Esp3I CGTCTC 1 cut(s) 953
FaeI CATG 4 cut(s) 521, 764, 988, 1041
FalI AAGNNNNNCTT 4 cut(s) 453, 485, 1194, 1226
FaqI GGGAC 3 cut(s) 603, 914, 1219
FatI CATG 4 cut(s) 517, 760, 984, 1037
Fnu4HI GCNGC 4 cut(s) 222, 667, 1158, 1187
FokI GGATG 4 cut(s) 44, 1118, 1130, 1151
Fsp4HI GCNGC 4 cut(s) 222, 667, 1158, 1187
FspBI CTAG 4 cut(s) 11, 363, 1244, 1262
GluI GCNGC 4 cut(s) 222, 667, 1158, 1187
HaeIII GGCC 7 cut(s) 9, 290, 341, 483, 666, 759, 833
HapII CCGG 6 cut(s) 102, 291, 618, 663, 838, 869
HgaI GACGC 1 cut(s) 518
Hin1II CATG 4 cut(s) 521, 764, 988, 1041
HinfI GANTC 3 cut(s) 191, 244, 296
HpaII CCGG 6 cut(s) 102, 291, 618, 663, 838, 869
HphI GGTGA 3 cut(s) 424, 824, 1157
Hpy166II GTNNAC 2 cut(s) 919, 1240
Hpy188I TCNGA 5 cut(s) 44, 301, 326, 910, 930
Hpy188III TCNNGA 7 cut(s) 266, 363, 373, 454, 518, 899, 1219
Hpy8I GTNNAC 2 cut(s) 919, 1240
Hpy99I CGWCG 2 cut(s) 80, 900
HpyAV CCTTC 8 cut(s) 22, 473, 580, 671, 1136, 1196, 1246, 1267
HpyCH4IV ACGT 4 cut(s) 78, 731, 921, 962
HpyCH4V TGCA 8 cut(s) 198, 320, 497, 526, 683, 998, 1031, 1173
HpyF10VI GCNNNNNNNGC 1 cut(s) 397
HpyF3I CTNAG 2 cut(s) 267, 405
HpySE526I ACGT 4 cut(s) 78, 731, 921, 962
Hsp92II CATG 4 cut(s) 521, 764, 988, 1041
KroI GCCGGC 1 cut(s) 662
KroNI GCCGGC 1 cut(s) 664
KspI CCGCGG 1 cut(s) 670
Kzo9I GATC 2 cut(s) 514, 1077
LmnI GCTCC 4 cut(s) 430, 538, 1090, 1154
Lsp1109I GCAGC 3 cut(s) 208, 1169, 1198
LweI GCATC 1 cut(s) 1003
MaeI CTAG 4 cut(s) 11, 363, 1244, 1262
MaeII ACGT 4 cut(s) 78, 731, 921, 962
MaeIII GTNAC 4 cut(s) 214, 245, 280, 1094
MalI GATC 2 cut(s) 516, 1079
MboI GATC 2 cut(s) 514, 1077
MboII GAAGA 6 cut(s) 56, 518, 607, 761, 1124, 1277
MhlI GDGCHC 2 cut(s) 435, 625
MluCI AATT 6 cut(s) 37, 355, 611, 706, 972, 1046
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 3 cut(s) 349, 516, 945
MroNI GCCGGC 1 cut(s) 662
MseI TTAA 1 cut(s) 69
MslI CAYNNNNRTG 1 cut(s) 638
MspA1I CMGCKG 2 cut(s) 221, 669
MspI CCGG 6 cut(s) 102, 291, 618, 663, 838, 869
Mva1269I GAATGC 1 cut(s) 421
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 1 cut(s) 397
NaeI GCCGGC 1 cut(s) 664
NcoI CCATGG 1 cut(s) 760
NdeII GATC 2 cut(s) 514, 1077
NgoMIV GCCGGC 1 cut(s) 662
NlaIII CATG 4 cut(s) 521, 764, 988, 1041
NlaIV GGNNCC 3 cut(s) 576, 1086, 1132
NmuCI GTSAC 3 cut(s) 245, 280, 1094
NspI RCATGY 1 cut(s) 988
NspV TTCGAA 1 cut(s) 162
OliI CACNNNNGTG 1 cut(s) 638
PagI TCATGA 1 cut(s) 517
PceI AGGCCT 1 cut(s) 833
PciI ACATGT 1 cut(s) 984
PctI GAATGC 1 cut(s) 421
PdiI GCCGGC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 191, 296
PflMI CCANNNNNTGG 1 cut(s) 766
PkrI GCNGC 4 cut(s) 223, 668, 1159, 1188
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PscI ACATGT 1 cut(s) 984
PspN4I GGNNCC 3 cut(s) 576, 1086, 1132
PspPI GGNCC 1 cut(s) 1240
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 638
SacII CCGCGG 1 cut(s) 670
SaqAI TTAA 1 cut(s) 69
SatI GCNGC 4 cut(s) 222, 667, 1158, 1187
Sau3AI GATC 2 cut(s) 514, 1077
Sau96I GGNCC 1 cut(s) 1240
SchI GAGTC 1 cut(s) 253
SduI GDGCHC 2 cut(s) 435, 625
SfaNI GCATC 1 cut(s) 1003
SfcI CTRYAG 1 cut(s) 22
Sfr303I CCGCGG 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 162
SgrAI CRCCGGYG 1 cut(s) 617
SgrBI CCGCGG 1 cut(s) 670
SinI GGWCC 1 cut(s) 1240
SmiMI CAYNNNNRTG 1 cut(s) 638
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 6 cut(s) 37, 355, 611, 706, 972, 1046
SseBI AGGCCT 1 cut(s) 833
SsiI CCGC 5 cut(s) 219, 572, 667, 669, 886
SspI AATATT 1 cut(s) 566
SspMI CTAG 4 cut(s) 11, 363, 1244, 1262
StuI AGGCCT 1 cut(s) 833
StyI CCWWGG 5 cut(s) 10, 501, 760, 1088, 1134
TaiI ACGT 4 cut(s) 81, 734, 924, 965
TaqI TCGA 1 cut(s) 162
TaqII GACCGA 1 cut(s) 614
TasI AATT 6 cut(s) 37, 355, 611, 706, 972, 1046
TatI WGTACW 1 cut(s) 543
TauI GCSGC 1 cut(s) 669
TfiI GAWTC 2 cut(s) 191, 296
Tru1I TTAA 1 cut(s) 69
Tru9I TTAA 1 cut(s) 69
TscAI CASTG 4 cut(s) 97, 128, 413, 643
TseFI GTSAC 3 cut(s) 245, 280, 1094
TseI GCWGC 3 cut(s) 221, 1157, 1186
Tsp45I GTSAC 3 cut(s) 245, 280, 1094
TspDTI ATGAA 5 cut(s) 146, 164, 756, 831, 1155
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 4 cut(s) 97, 128, 413, 643
Van91I CCANNNNNTGG 1 cut(s) 766
VpaK11BI GGWCC 1 cut(s) 1240
XapI RAATTY 6 cut(s) 37, 355, 611, 706, 972, 1046
XbaI TCTAGA 1 cut(s) 362
XceI RCATGY 1 cut(s) 988
XcmI CCANNNNNNNNNTGG 1 cut(s) 1234
XmaJI CCTAGG 1 cut(s) 10
XspI CTAG 4 cut(s) 11, 363, 1244, 1262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.