Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

84403049 .. 84403789

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG611800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGACACCGGTGGCATTGGTTTAACCAAGAAGAAGGATGAGAATTTCGGAGAGTGGTATTCGGAGGTTGTTGTTCACGGTGAGATGATTGAGTACTACGACATCTCAGGATGTTATATTTTGAGGCCATGGACAATGGCAATATGGGAGACCATGCAAGCATTCTTCAATGCAGAAATAAAAAAAATGAAGATTAAAAATTGCTACTTTCCTTTGTTAGTCTCCCCTGCTGTTCTGGAAAAAGAGAAGGATCATATAGCGGAGTCAGAGGTTGCTTGGGTCACAAAGTATGGAAAATCTGATTTGAAAGTGCCTATTGCAGTCCGTCCAACGAGTGAGACTGTTATGTATCCTTATTACTCAGAGTGGATTAGGGGACACCGTGACTTACCATTGAAGTTAAATCAGTGGTGCAATGTAGTTCGATGGGAGTCTAGCAATCCCACTCCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCACACAGCTTTTGCAACAAAGGAAGAGGCAGATAAAGAGGTCCTTGAGATATTGGAACTGTACAGAAGGATATATGAGGAATATTTGGCAATTCCAGTTGTGAAGGGAAAAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTACACCACAAGTGTGGAGGCTTTTGTTCCAAATACTGGCCGCAGCGTGCAAGGCGCCACTTCACATTGTCTGGGTCAAAACTTTGCTAAAATGTTCGACATTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

246

Amino Acids

28.42

Weight (kDa)

5.84

Isoelectric Point (pI)

40.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	106 - 245	2.5e-18	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	2 cut(s)	263, 673
AclWI	GGATC	1 cut(s)	261
AcoI	YGGCCR	1 cut(s)	670
AcsI	RAATTY	2 cut(s)	46, 617
AcyI	GRCGYC	1 cut(s)	687
AfaI	GTAC	2 cut(s)	98, 551
AfiI	CCNNNNNNNGG	1 cut(s)	668
AgeI	ACCGGT	1 cut(s)	11
AgsI	TTSAA	3 cut(s)	172, 310, 400
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	146, 229, 335
AlwI	GGATC	1 cut(s)	261
AoxI	GGCC	3 cut(s)	128, 487, 670
ApeKI	GCWGC	1 cut(s)	675
ApoI	RAATTY	2 cut(s)	46, 617
AsiGI	ACCGGT	1 cut(s)	11
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	529
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	529
BanI	GGYRCC	1 cut(s)	686
BbvI	GCAGC	1 cut(s)	687
BccI	CCATC	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	363
BcoDI	GTCTC	3 cut(s)	146, 229, 335
BfaI	CTAG	1 cut(s)	438
BfoI	RGCGCY	1 cut(s)	690
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	673, 676
BlsI	GCNGC	2 cut(s)	674, 677
BmcAI	AGTACT	1 cut(s)	98
Bme18I	GGWCC	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	554
BsaHI	GRCGYC	1 cut(s)	687
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	131
BsaWI	WCCGGW	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	1 cut(s)	668
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	2 cut(s)	584, 673
Bse3DI	GCAATG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	46, 119
BseLI	CCNNNNNNNGG	1 cut(s)	668
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	2 cut(s)	123, 378
BseNI	ACTGG	2 cut(s)	584, 673
BseXI	GCAGC	1 cut(s)	687
BshFI	GGCC	3 cut(s)	130, 489, 672
BshNI	GGYRCC	1 cut(s)	686
BshTI	ACCGGT	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	12
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	668
BsmAI	GTCTC	3 cut(s)	146, 229, 335
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	3 cut(s)	130, 489, 672
Bso31I	GGTCTC	1 cut(s)	146
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	1 cut(s)	253
Bsp19I	CCATGG	1 cut(s)	131
BspACI	CCGC	2 cut(s)	263, 673
BspANI	GGCC	3 cut(s)	130, 489, 672
BspCNI	CTCAG	2 cut(s)	122, 377
BspLI	GGNNCC	1 cut(s)	688
BspPI	GGATC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	424
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	549
BsrI	ACTGG	2 cut(s)	584, 673
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	1 cut(s)	131
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	1 cut(s)	687
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	4 cut(s)	83, 346, 386, 549
Bst6I	CTCTTC	1 cut(s)	507
BstACI	GRCGYC	1 cut(s)	687
BstAUI	TGTACA	1 cut(s)	549
BstC8I	GCNNGC	2 cut(s)	162, 680
BstDEI	CTNAG	3 cut(s)	109, 364, 738
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	46, 119
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	3 cut(s)	146, 229, 335
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	687
BstXI	CCANNNNNNTGG	1 cut(s)	646
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	130, 489, 672
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	2 cut(s)	46, 119
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	2 cut(s)	162, 680
CfoI	GCGC	1 cut(s)	689
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	529
Csp6I	GTAC	2 cut(s)	97, 550
CspAI	ACCGGT	1 cut(s)	11
CviAII	CATG	2 cut(s)	132, 157
CviJI	RGCY	6 cut(s)	5, 130, 489, 497, 653, 672
CviKI_1	RGCY	6 cut(s)	5, 130, 489, 497, 653, 672
CviQI	GTAC	2 cut(s)	97, 550
DdeI	CTNAG	3 cut(s)	109, 364, 738
DinI	GGCGCC	1 cut(s)	688
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
EaeI	YGGCCR	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	529
EcoT14I	CCWWGG	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	688
EheI	GGCGCC	1 cut(s)	688
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	2 cut(s)	135, 160
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	2 cut(s)	131, 156
Fnu4HI	GCNGC	2 cut(s)	673, 676
FokI	GGATG	2 cut(s)	53, 126
Fsp4HI	GCNGC	2 cut(s)	673, 676
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	2 cut(s)	673, 676
HaeII	RGCGCY	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	130, 489, 672
HapII	CCGG	1 cut(s)	12
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	687
Hin1II	CATG	2 cut(s)	135, 160
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HinfI	GANTC	3 cut(s)	266, 434, 463
HpaII	CCGG	1 cut(s)	12
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	5 cut(s)	53, 67, 271, 304, 367
Hpy188III	TCNNGA	4 cut(s)	111, 239, 460, 467
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	5 cut(s)	31, 244, 479, 549, 586
HpyCH4III	ACNGT	4 cut(s)	83, 346, 386, 549
HpyCH4V	TGCA	6 cut(s)	160, 176, 323, 417, 503, 682
HpyF10VI	GCNNNNNNNGC	1 cut(s)	684
HpyF3I	CTNAG	3 cut(s)	109, 364, 738
Hsp92I	GRCGYC	1 cut(s)	687
Hsp92II	CATG	2 cut(s)	135, 160
HspAI	GCGC	1 cut(s)	687
KasI	GGCGCC	1 cut(s)	686
Kzo9I	GATC	1 cut(s)	253
LpnPI	CCDG	9 cut(s)	25, 96, 224, 243, 445, 597, 609, 654, 689
Lsp1109I	GCAGC	1 cut(s)	687
MaeI	CTAG	1 cut(s)	438
MaeIII	GTNAC	2 cut(s)	283, 386
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	4 cut(s)	46, 160, 205, 524
MluCI	AATT	4 cut(s)	46, 202, 579, 617
Mly113I	GGCGCC	1 cut(s)	687
MlyI	GAGTC	3 cut(s)	275, 443, 472
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	7 cut(s)	61, 120, 265, 508, 520, 559, 643
MseI	TTAA	3 cut(s)	26, 198, 404
MslI	CAYNNNNRTG	1 cut(s)	644
MspI	CCGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	164
MwoI	GCNNNNNNNGC	1 cut(s)	684
NarI	GGCGCC	1 cut(s)	687
NcoI	CCATGG	1 cut(s)	131
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	135, 160
NlaIV	GGNNCC	1 cut(s)	688
NmuCI	GTSAC	2 cut(s)	283, 386
OliI	CACNNNNGTG	1 cut(s)	644
PctI	GAATGC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	668
PinAI	ACCGGT	1 cut(s)	11
PkrI	GCNGC	2 cut(s)	674, 677
PleI	GAGTC	3 cut(s)	274, 442, 471
PluTI	GGCGCC	1 cut(s)	690
PpsI	GAGTC	3 cut(s)	274, 442, 471
PpuMI	RGGWCCY	1 cut(s)	529
Psp5II	RGGWCCY	1 cut(s)	529
PspN4I	GGNNCC	1 cut(s)	688
PspPI	GGNCC	1 cut(s)	529
PspPPI	RGGWCCY	1 cut(s)	529
RsaI	GTAC	2 cut(s)	98, 551
RsaNI	GTAC	2 cut(s)	97, 550
RseI	CAYNNNNRTG	1 cut(s)	644
SaqAI	TTAA	3 cut(s)	26, 198, 404
SatI	GCNGC	2 cut(s)	673, 676
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	1 cut(s)	529
ScaI	AGTACT	1 cut(s)	98
SchI	GAGTC	3 cut(s)	275, 443, 472
SetI	ASST	4 cut(s)	72, 276, 499, 531
SfoI	GGCGCC	1 cut(s)	688
SgrAI	CRCCGGYG	1 cut(s)	11
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	1 cut(s)	644
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	4 cut(s)	46, 202, 579, 617
SsiI	CCGC	2 cut(s)	263, 673
SspDI	GGCGCC	1 cut(s)	686
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	4 cut(s)	83, 346, 386, 549
TaqI	TCGA	2 cut(s)	427, 729
TasI	AATT	4 cut(s)	46, 202, 579, 617
TatI	WGTACW	2 cut(s)	96, 549
TauI	GCSGC	1 cut(s)	675
Tru1I	TTAA	3 cut(s)	26, 198, 404
Tru9I	TTAA	3 cut(s)	26, 198, 404
TscAI	CASTG	1 cut(s)	416
TseFI	GTSAC	2 cut(s)	283, 386
TseI	GCWGC	1 cut(s)	675
Tsp45I	GTSAC	2 cut(s)	283, 386
TspDTI	ATGAA	1 cut(s)	206
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	416
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	2 cut(s)	46, 617
XspI	CTAG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.