Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

8740997 .. 8741437

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG096400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTGTCTCTTGCAATCCGACCAACAAGCGAGGCCATCATGCATGTATCCAGATTTCTCTAAAAGAATCAGGAGTCACCTTGACTTGCCATACAAGCAAAACCAGTGGGTGAATGTTGTTTGTTGGGAGCACAATCCTACTCCATTTATCAGGAGTAAAGAGTTTCTTTGGCAAGAAGGCCACACTGCTTTTGCAACCAAGGAAGAGGCAGATCATGAGGTGCAGGAGATGTTGGAGCTGTACAGAAAGATATATGAGGAATATTTGGCGGTTCCAGTTGTGAAGGGACAGAAGACCGAGCTTGAGAAATTCGCCGGTGCTCTTTACACCACCAGTGTGGAGGCTTTTATTCCTAATGCCGGCCGCGGTATACAAGGTGCTACCTCACATTGTTTGGGTCAAAATTTTGCTGAAATGTTTGACATCACGTTTGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

146

Amino Acids

16.94

Weight (kDa)

5.34

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	19 - 145	2.9e-10	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	1 cut(s)	366
AciI	CCGC	3 cut(s)	269, 364, 366
AcoI	YGGCCR	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	308, 403
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	1 cut(s)	359
AleI	CACNNNNGTG	1 cut(s)	335
AluBI	AGCT	2 cut(s)	238, 301
AluI	AGCT	2 cut(s)	238, 301
Alw21I	GWGCWC	2 cut(s)	132, 322
Alw26I	GTCTC	1 cut(s)	11
AoxI	GGCC	3 cut(s)	32, 178, 361
ApoI	RAATTY	2 cut(s)	308, 403
ArsI	GACNNNNNNTTYG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	68, 121
BbsI	GAAGAC	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	132, 322
BccI	CCATC	1 cut(s)	43
BciVI	GTATCC	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	57
BisI	GCNGC	1 cut(s)	364
BlsI	GCNGC	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	273
BpiI	GAAGAC	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	198, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	359
Bse118I	RCCGGY	2 cut(s)	314, 359
Bse1I	ACTGG	3 cut(s)	103, 275, 333
BseDI	CCNNGG	2 cut(s)	198, 364
BseLI	CCNNNNNNNGG	1 cut(s)	359
BseNI	ACTGG	3 cut(s)	103, 275, 333
BseX3I	CGGCCG	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	242
Bsh1236I	CGCG	1 cut(s)	366
Bsh1285I	CGRYCG	1 cut(s)	364
BshFI	GGCC	3 cut(s)	34, 180, 363
BsiEI	CGRYCG	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	132, 322
BsiSI	CCGG	2 cut(s)	315, 360
BslFI	GGGAC	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	359
BsmAI	GTCTC	1 cut(s)	11
BsmFI	GGGAC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	34, 180, 363
Bsp1286I	GDGCHC	2 cut(s)	132, 322
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	3 cut(s)	269, 364, 366
BspANI	GGCC	3 cut(s)	34, 180, 363
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	273
BsrFI	RCCGGY	2 cut(s)	314, 359
BsrGI	TGTACA	1 cut(s)	240
BsrI	ACTGG	3 cut(s)	103, 275, 333
BssAI	RCCGGY	2 cut(s)	314, 359
BssECI	CCNNGG	2 cut(s)	198, 364
BssMI	GATC	1 cut(s)	211
BssNAI	GTATAC	1 cut(s)	371
BssT1I	CCWWGG	1 cut(s)	198
Bst1107I	GTATAC	1 cut(s)	371
Bst6I	CTCTTC	1 cut(s)	198
BstAUI	TGTACA	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	361
BstDSI	CCRYGG	1 cut(s)	364
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	211
BstMCI	CGRYCG	1 cut(s)	364
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	46
BstUI	CGCG	1 cut(s)	366
BstV2I	GAAGAC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstZ17I	GTATAC	1 cut(s)	371
BstZI	CGGCCG	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	34, 180, 363
BtgI	CCRYGG	1 cut(s)	364
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	3 cut(s)	110, 183, 340
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	2 cut(s)	314, 359
Cfr42I	CCGCGG	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	241
CspCI	CAANNNNNGTGG	2 cut(s)	86, 121
CviAII	CATG	3 cut(s)	39, 43, 215
CviJI	RGCY	6 cut(s)	34, 180, 238, 301, 344, 363
CviKI_1	RGCY	6 cut(s)	34, 180, 238, 301, 344, 363
CviQI	GTAC	1 cut(s)	241
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	361
EagI	CGGCCG	1 cut(s)	361
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
EclXI	CGGCCG	1 cut(s)	361
Eco130I	CCWWGG	1 cut(s)	198
Eco52I	CGGCCG	1 cut(s)	361
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	44
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	3 cut(s)	42, 46, 218
FaiI	YATR	7 cut(s)	40, 44, 91, 216, 253, 255, 371
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	1 cut(s)	300
FatI	CATG	3 cut(s)	38, 42, 214
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	364
GluI	GCNGC	1 cut(s)	364
HaeIII	GGCC	3 cut(s)	34, 180, 363
HapII	CCGG	2 cut(s)	315, 360
Hin1II	CATG	3 cut(s)	42, 46, 218
HinfI	GANTC	2 cut(s)	66, 73
HpaII	CCGG	2 cut(s)	315, 360
HphI	GGTGA	2 cut(s)	68, 121
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	4 cut(s)	50, 70, 151, 215
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	170, 277
HpyCH4IV	ACGT	1 cut(s)	428
HpyCH4V	TGCA	4 cut(s)	13, 42, 194, 223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	42, 46, 218
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
KspI	CCGCGG	1 cut(s)	367
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	127, 235
LpnPI	CCDG	9 cut(s)	55, 63, 116, 136, 209, 288, 328, 346, 373
MaeII	ACGT	1 cut(s)	428
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	215, 304
MhlI	GDGCHC	2 cut(s)	132, 322
MluCI	AATT	3 cut(s)	308, 403, 436
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	2 cut(s)	42, 213
MnlI	CCTC	6 cut(s)	24, 199, 211, 250, 334, 394
Mph1103I	ATGCAT	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	1 cut(s)	439
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	366
MspI	CCGG	2 cut(s)	315, 360
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	94
NaeI	GCCGGC	1 cut(s)	361
NdeII	GATC	1 cut(s)	211
NgoMIV	GCCGGC	1 cut(s)	359
NlaIII	CATG	3 cut(s)	42, 46, 218
NlaIV	GGNNCC	1 cut(s)	273
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	46
OliI	CACNNNNGTG	1 cut(s)	335
PagI	TCATGA	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	66
PkrI	GCNGC	1 cut(s)	365
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
RseI	CAYNNNNRTG	1 cut(s)	335
SacII	CCGCGG	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	364
Sau3AI	GATC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	132, 322
SetI	ASST	7 cut(s)	81, 222, 240, 303, 379, 386, 431
Sfr303I	CCGCGG	1 cut(s)	367
SgrAI	CRCCGGYG	1 cut(s)	314
SgrBI	CCGCGG	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	308, 403, 436
SsiI	CCGC	3 cut(s)	269, 364, 366
SspI	AATATT	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	198
TaiI	ACGT	1 cut(s)	431
TaqII	GACCGA	1 cut(s)	311
TasI	AATT	3 cut(s)	308, 403, 436
TatI	WGTACW	1 cut(s)	240
TauI	GCSGC	1 cut(s)	366
TfiI	GAWTC	1 cut(s)	66
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	3 cut(s)	110, 190, 340
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspRI	CASTG	3 cut(s)	110, 190, 340
XapI	RAATTY	2 cut(s)	308, 403
XceI	RCATGY	1 cut(s)	46
XmiI	GTMKAC	1 cut(s)	370
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.