Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

8243896 .. 8247823

Gene Structure 3928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g11840.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCAAACATTCTTTGATGCAGAAATAAAGAAAATGAAGATAAAGAATTGCTATTTCCCTTTATTTGTGTCCCCTGGTGTTCTAGAACGAGAGAAGGATCATATTGAGGGTTTTGCTCCAGAGGTTGCGTGGGTCACAAAGTCTGGAAAGTCTGACTTGGAAGTGCCAATAGCAAATCGTCCAACAAGAGAGACTGTTATGTATCCTTATTTTGCTAAGTGGATCAGAGGACACCGTGATTTGCCATTGAAGCTAAATCAGTGGTGCAATGTTGTCCGGTGGGAGTTCAGCAATCCTACACCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCATACAGCTTTTGCAACAAAGGCAGAGGCAGATGAAGAGGTCCTTGAGATATTGGAACTGTACCGGAGGATATACGAGGACTATTTGGCAGTTCCAGTTGTGAAGGGAAAAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTATACTACTAGTGTGGAGGCTTTTATTCCAAATACTGGCCGTGGTGTACAAGGTGCCACCTCACATTGTTTGGGTCAAAATTTTGCTAAAATGTTTGAGATTAATTTTGAAAATGAAAACAGAGAAAAGGGCATGGTTTGGCAAAACTCTTGGGCATACAGCACTCGAACGATTGGAGTGATGGTGATGGTGCACGGAGATGACAAAGGCTTGGTATTGCCACCTAAAGTGGCAGCAATTCAGGCTATTGTGGTTCCAGTGCCTTACAAGGATACTCCTATGGAAGAAATATATGATGCCTGCTTGAAAACTGTGGATACCTTGACGAAAGCTGGTATTCGTGCTGAGGCAGATTTAAGTGACAACCAAACTCCTGGTTGGAAGTATTCACATTGGGAGATGAAAGGTGTTCCTCTAAGGATTGAAATTGGACCAAAGGATCTGCAAAAGAATCAAGTTCGCGTTGTCCGCCGTGACAATTCAGCAAAAGAGGACATTCCTGTGAGCATGTTGGTTGAGCAAGTACAAGACATCTTGGCTAAAATTCACGAAAATCTGTTCAATGTTGCAAAGGAAAAACGAGATGCTTCTATCAAGGTTGCAAAGACATGGGAAGAATTCATGGAAGCTCTAAACCAAAAGAAAATGATCTTGGCTCCTTGGTGTGATGAACAGGAAGTAGAAGAGGACGTGAAAAAACGGACAAAGGGTGAAATCGGAGCAGCCAAGTCACTTTGTACTCCATTTGAGCAGCCCGAGCTTCCTGAAGGGACACTTTGCTTTGCCTCTGGAAAACCAGCCAAGAAATGGACCTACTGGGGCAGGAGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

439

Amino Acids

50.18

Weight (kDa)

6.45

Isoelectric Point (pI)

40.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	536
AccB7I	CCANNNNNTGG	2 cut(s)	518, 1290
AccII	CGCG	1 cut(s)	945
AciI	CCGC	1 cut(s)	952
AclWI	GGATC	3 cut(s)	105, 230, 930
AcoI	YGGCCR	1 cut(s)	520
AcsI	RAATTY	4 cut(s)	467, 562, 1026, 1100
AcuI	CTGAAG	1 cut(s)	1269
AfaI	GTAC	4 cut(s)	401, 531, 1008, 1222
AfiI	CCNNNNNNNGG	2 cut(s)	518, 1290
AgsI	TTSAA	5 cut(s)	250, 593, 790, 908, 1045
AhlI	ACTAGT	1 cut(s)	491
AjiI	CACGTC	1 cut(s)	1174
AjnI	CCWGG	2 cut(s)	73, 856
AjuI	GAANNNNNNNTTGG	2 cut(s)	1118, 1150
AluBI	AGCT	5 cut(s)	253, 347, 815, 1112, 1243
AluI	AGCT	5 cut(s)	253, 347, 815, 1112, 1243
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	1 cut(s)	185
Alw44I	GTGCAC	1 cut(s)	674
AlwI	GGATC	3 cut(s)	105, 230, 930
Ama87I	CYCGRG	1 cut(s)	1238
AoxI	GGCC	2 cut(s)	337, 520
ApaLI	GTGCAC	1 cut(s)	674
ApeKI	GCWGC	3 cut(s)	716, 1205, 1234
ApoI	RAATTY	4 cut(s)	467, 562, 1026, 1100
AseI	ATTAAT	1 cut(s)	585
AspS9I	GGNCC	3 cut(s)	379, 914, 1293
AsuHPI	GGTGA	2 cut(s)	679, 1205
AvaI	CYCGRG	1 cut(s)	1238
AvaII	GGWCC	3 cut(s)	379, 914, 1293
BaeGI	GKGCMC	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	678
BbvCI	CCTCAGC	1 cut(s)	828
BbvI	GCAGC	3 cut(s)	728, 1217, 1246
BccI	CCATC	2 cut(s)	658, 664
BceAI	ACGGC	2 cut(s)	507, 939
BciT130I	CCWGG	2 cut(s)	75, 858
BciVI	GTATCC	3 cut(s)	213, 748, 793
BcoDI	GTCTC	1 cut(s)	185
BcuI	ACTAGT	1 cut(s)	491
BfaI	CTAG	3 cut(s)	83, 492, 1315
BfuI	GTATCC	3 cut(s)	213, 748, 793
BisI	GCNGC	3 cut(s)	717, 1206, 1235
BlsI	GCNGC	3 cut(s)	718, 1207, 1236
Bme1390I	CCNGG	2 cut(s)	75, 858
Bme18I	GGWCC	3 cut(s)	379, 914, 1293
BmeT110I	CYCGRG	1 cut(s)	1238
BmgBI	CACGTC	1 cut(s)	1174
BmgT120I	GGNCC	3 cut(s)	379, 914, 1293
BmiI	GGNNCC	3 cut(s)	538, 738, 1140
BmrFI	CCNGG	2 cut(s)	75, 858
BmrI	ACTGGG	1 cut(s)	1309
BmsI	GCATC	3 cut(s)	7, 769, 1057
BmuI	ACTGGG	1 cut(s)	1309
BpmI	CTGGAG	1 cut(s)	102
Bpu10I	CCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	404
BsaJI	CCNNGG	3 cut(s)	73, 523, 1142
BsaWI	WCCGGW	2 cut(s)	276, 402
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 1290
Bse1I	ACTGG	4 cut(s)	434, 523, 740, 1304
Bse3DI	GCAATG	1 cut(s)	274
BseBI	CCWGG	2 cut(s)	75, 858
BseDI	CCNNGG	3 cut(s)	73, 523, 1142
BseLI	CCNNNNNNNGG	2 cut(s)	518, 1290
BseMI	GCAATG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	819
BseNI	ACTGG	4 cut(s)	434, 523, 740, 1304
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	3 cut(s)	728, 1217, 1246
Bsh1236I	CGCG	1 cut(s)	945
BshFI	GGCC	2 cut(s)	339, 522
BshNI	GGYRCC	1 cut(s)	536
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	1238
BsiSI	CCGG	2 cut(s)	277, 403
BslFI	GGGAC	2 cut(s)	55, 1267
BslI	CCNNNNNNNGG	2 cut(s)	518, 1290
BsmAI	GTCTC	1 cut(s)	185
BsmFI	GGGAC	2 cut(s)	55, 1267
BsnI	GGCC	2 cut(s)	339, 522
BsoBI	CYCGRG	1 cut(s)	1238
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	4 cut(s)	97, 222, 922, 1131
BspACI	CCGC	1 cut(s)	952
BspANI	GGCC	2 cut(s)	339, 522
BspCNI	CTCAG	1 cut(s)	820
BspFNI	CGCG	1 cut(s)	945
BspLI	GGNNCC	3 cut(s)	538, 738, 1140
BspPI	GGATC	3 cut(s)	105, 230, 930
BspT107I	GGYRCC	1 cut(s)	536
BsrDI	GCAATG	1 cut(s)	274
BsrGI	TGTACA	1 cut(s)	529
BsrI	ACTGG	4 cut(s)	434, 523, 740, 1304
BssECI	CCNNGG	3 cut(s)	73, 523, 1142
BssMI	GATC	4 cut(s)	97, 222, 922, 1131
BssT1I	CCWWGG	1 cut(s)	1142
Bst2UI	CCWGG	2 cut(s)	75, 858
Bst4CI	ACNGT	4 cut(s)	196, 236, 399, 796
Bst6I	CTCTTC	2 cut(s)	369, 1161
BstAUI	TGTACA	1 cut(s)	529
BstC8I	GCNNGC	1 cut(s)	784
BstDEI	CTNAG	3 cut(s)	216, 828, 899
BstDSI	CCRYGG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	945
BstKTI	GATC	4 cut(s)	100, 225, 925, 1134
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	4 cut(s)	97, 222, 922, 1131
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 359, 725, 951, 1240
BstNI	CCWGG	2 cut(s)	75, 858
BstNSI	RCATGY	1 cut(s)	994
BstSCI	CCNGG	2 cut(s)	73, 856
BstSLI	GKGCMC	1 cut(s)	678
BstUI	CGCG	1 cut(s)	945
BstV1I	GCAGC	3 cut(s)	728, 1217, 1246
BstX2I	RGATCY	1 cut(s)	922
BstXI	CCANNNNNNTGG	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	922
BsuI	GTATCC	3 cut(s)	213, 748, 793
BsuRI	GGCC	2 cut(s)	339, 522
BtgI	CCRYGG	1 cut(s)	523
BtrI	CACGTC	1 cut(s)	1174
BtsIMutI	CAGTG	2 cut(s)	266, 747
Cac8I	GCNNGC	1 cut(s)	784
Cfr13I	GGNCC	3 cut(s)	379, 914, 1293
Csp6I	GTAC	4 cut(s)	400, 530, 1007, 1221
CviAII	CATG	4 cut(s)	616, 991, 1092, 1105
CviQI	GTAC	4 cut(s)	400, 530, 1007, 1221
DdeI	CTNAG	3 cut(s)	216, 828, 899
DpnI	GATC	4 cut(s)	99, 224, 924, 1133
DpnII	GATC	4 cut(s)	97, 222, 922, 1131
EaeI	YGGCCR	1 cut(s)	520
Eam1104I	CTCTTC	2 cut(s)	369, 1161
EarI	CTCTTC	2 cut(s)	369, 1161
EciI	GGCGGA	1 cut(s)	941
Eco130I	CCWWGG	1 cut(s)	1142
Eco47I	GGWCC	3 cut(s)	379, 914, 1293
Eco57I	CTGAAG	1 cut(s)	1269
Eco88I	CYCGRG	1 cut(s)	1238
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRI	GAATTC	1 cut(s)	1100
EcoRII	CCWGG	2 cut(s)	73, 856
EcoT14I	CCWWGG	1 cut(s)	1142
ErhI	CCWWGG	1 cut(s)	1142
FaeI	CATG	4 cut(s)	619, 994, 1095, 1108
FalI	AAGNNNNNCTT	6 cut(s)	140, 172, 366, 398, 1242, 1274
FaqI	GGGAC	2 cut(s)	55, 1267
FatI	CATG	4 cut(s)	615, 990, 1091, 1104
Fnu4HI	GCNGC	3 cut(s)	717, 1206, 1235
Fsp4HI	GCNGC	3 cut(s)	717, 1206, 1235
FspBI	CTAG	3 cut(s)	83, 492, 1315
GluI	GCNGC	3 cut(s)	717, 1206, 1235
GsuI	CTGGAG	1 cut(s)	102
HaeIII	GGCC	2 cut(s)	339, 522
HapII	CCGG	2 cut(s)	277, 403
Hin1II	CATG	4 cut(s)	619, 994, 1095, 1108
HinfI	GANTC	2 cut(s)	313, 934
HpaII	CCGG	2 cut(s)	277, 403
HphI	GGTGA	2 cut(s)	679, 1205
Hpy166II	GTNNAC	2 cut(s)	530, 676
Hpy188I	TCNGA	3 cut(s)	154, 227, 1202
Hpy188III	TCNNGA	8 cut(s)	83, 119, 144, 310, 317, 1031, 1247, 1272
Hpy8I	GTNNAC	2 cut(s)	530, 676
HpyAV	CCTTC	4 cut(s)	88, 329, 436, 1244
HpyCH4III	ACNGT	4 cut(s)	196, 236, 399, 796
HpyCH4IV	ACGT	1 cut(s)	1173
HpyCH4V	TGCA	8 cut(s)	4, 20, 267, 353, 676, 928, 1052, 1085
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 359, 725, 951, 1240
HpyF3I	CTNAG	3 cut(s)	216, 828, 899
HpySE526I	ACGT	1 cut(s)	1173
Hsp92II	CATG	4 cut(s)	619, 994, 1095, 1108
Kzo9I	GATC	4 cut(s)	97, 222, 922, 1131
LmnI	GCTCC	3 cut(s)	121, 1144, 1202
Lsp1109I	GCAGC	3 cut(s)	728, 1217, 1246
LweI	GCATC	3 cut(s)	7, 769, 1057
MaeI	CTAG	3 cut(s)	83, 492, 1315
MaeII	ACGT	1 cut(s)	1173
MaeIII	GTNAC	5 cut(s)	133, 842, 956, 1212, 1310
MalI	GATC	4 cut(s)	99, 224, 924, 1133
MboI	GATC	4 cut(s)	97, 222, 922, 1131
MboII	GAAGA	5 cut(s)	49, 386, 779, 1109, 1178
MflI	RGATCY	1 cut(s)	922
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	9 cut(s)	46, 467, 562, 586, 720, 909, 961, 1026, 1100
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	2 cut(s)	206, 842
MseI	TTAA	2 cut(s)	585, 839
MslI	CAYNNNNRTG	2 cut(s)	681, 983
MspI	CCGG	2 cut(s)	277, 403
MspR9I	CCNGG	2 cut(s)	75, 858
MvaI	CCWGG	2 cut(s)	75, 858
MvnI	CGCG	1 cut(s)	945
MwoI	GCNNNNNNNGC	5 cut(s)	250, 359, 725, 951, 1240
NdeII	GATC	4 cut(s)	97, 222, 922, 1131
NlaIII	CATG	4 cut(s)	619, 994, 1095, 1108
NlaIV	GGNNCC	3 cut(s)	538, 738, 1140
NmuCI	GTSAC	4 cut(s)	133, 842, 956, 1212
NspI	RCATGY	1 cut(s)	994
PfeI	GAWTC	1 cut(s)	934
PflMI	CCANNNNNTGG	2 cut(s)	518, 1290
PkrI	GCNGC	3 cut(s)	718, 1207, 1236
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
PpuMI	RGGWCCY	1 cut(s)	379
PshBI	ATTAAT	1 cut(s)	585
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	73, 856
PspGI	CCWGG	2 cut(s)	73, 856
PspN4I	GGNNCC	3 cut(s)	538, 738, 1140
PspPI	GGNCC	3 cut(s)	379, 914, 1293
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	922
RsaI	GTAC	4 cut(s)	401, 531, 1008, 1222
RsaNI	GTAC	4 cut(s)	400, 530, 1007, 1221
RseI	CAYNNNNRTG	2 cut(s)	681, 983
SaqAI	TTAA	2 cut(s)	585, 839
SatI	GCNGC	3 cut(s)	717, 1206, 1235
Sau3AI	GATC	4 cut(s)	97, 222, 922, 1131
Sau96I	GGNCC	3 cut(s)	379, 914, 1293
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	75, 858
SduI	GDGCHC	1 cut(s)	678
SfaNI	GCATC	3 cut(s)	7, 769, 1057
SinI	GGWCC	3 cut(s)	379, 914, 1293
SmiMI	CAYNNNNRTG	2 cut(s)	681, 983
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
SpeI	ACTAGT	1 cut(s)	491
Sse9I	AATT	9 cut(s)	46, 467, 562, 586, 720, 909, 961, 1026, 1100
SsiI	CCGC	1 cut(s)	952
SspMI	CTAG	3 cut(s)	83, 492, 1315
StyD4I	CCNGG	2 cut(s)	73, 856
StyI	CCWWGG	1 cut(s)	1142
TaaI	ACNGT	4 cut(s)	196, 236, 399, 796
TaiI	ACGT	1 cut(s)	1176
TaqI	TCGA	1 cut(s)	649
TasI	AATT	9 cut(s)	46, 467, 562, 586, 720, 909, 961, 1026, 1100
TatI	WGTACW	3 cut(s)	529, 1006, 1220
TfiI	GAWTC	1 cut(s)	934
Tru1I	TTAA	2 cut(s)	585, 839
Tru9I	TTAA	2 cut(s)	585, 839
TscAI	CASTG	2 cut(s)	266, 747
TseFI	GTSAC	4 cut(s)	133, 842, 956, 1212
TseI	GCWGC	3 cut(s)	716, 1205, 1234
Tsp45I	GTSAC	4 cut(s)	133, 842, 956, 1212
TspDTI	ATGAA	6 cut(s)	50, 387, 612, 899, 1093, 1167
TspGWI	ACGGA	2 cut(s)	693, 1198
TspRI	CASTG	2 cut(s)	266, 747
Van91I	CCANNNNNTGG	2 cut(s)	518, 1290
VneI	GTGCAC	1 cut(s)	674
VpaK11BI	GGWCC	3 cut(s)	379, 914, 1293
VspI	ATTAAT	1 cut(s)	585
XapI	RAATTY	4 cut(s)	467, 562, 1026, 1100
XbaI	TCTAGA	1 cut(s)	82
XceI	RCATGY	1 cut(s)	994
XcmI	CCANNNNNNNNNTGG	2 cut(s)	126, 1287
XspI	CTAG	3 cut(s)	83, 492, 1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.