Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17423047 .. 17424898

Gene Structure 1852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20862.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGATATTTAAACAAGCAGATTTTGAAGCAGAAACAGAGGAAATGGAGTTAGAATCTTGCACCTACCCTCTCTTTGTAACCCGTGATTCGTTGGAACGAGAAAAGAATCACATAGAGGGCTTCGCTCCTGAGGTTGCTTGGGTCACAGACGCTGGAAAGTCAGAACTGAAAGTGCGTCTTGGAATCCGTCCAACAAGCGAGGCTATCATGAGCAAAGAGTTTCTTTGGCAAGAAGGCCATACTGCTTTTGCAACAAAGGAAGAGGCAGATCATGAGGTCCAGGAGATTTTGGAAATGTACAGAAAGATGTATGAGGAATATTTGGCAGTTCCAGTTGTGAAGGGACAAAAGACCAAGCTTGAAAAATTCGCTGGTGCTCTTTACACCACAAGCGTAGAGGCTTTTATTCCTAATGCCGGCCGTGGTATACAAGGTGCCACCTCACATTGCTTGGGTCAGAATTTTGCTAAAATGTTTGACATCAAGTTTGAAAATGAAATGCAAGAGAAGGCCATGGTTTGGCAAAACTCTTGGGCTTATACTACTCGAACGATCGGAGTGATGGTGATGGTGCATGGAGATGACAGAGGGTTGGTAATGCCGCCTAAAGTGGCAACTTGCAGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

210

Amino Acids

23.86

Weight (kDa)

5.17

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	72 - 189	1.9e-09	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	519
AccI	GTMKAC	1 cut(s)	427
AciI	CCGC	1 cut(s)	602
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	365, 460
AfaI	GTAC	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	416, 519
AgsI	TTSAA	3 cut(s)	26, 362, 491
AjnI	CCWGG	1 cut(s)	279
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	1 cut(s)	379
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	3 cut(s)	235, 418, 510
ApoI	RAATTY	2 cut(s)	365, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	577
AvaII	GGWCC	1 cut(s)	277
AxyI	CCTNAGG	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	379
BccI	CCATC	2 cut(s)	556, 562
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	281
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	281
BsaJI	CCNNGG	2 cut(s)	421, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	549, 579
Bsc4I	CCNNNNNNNGG	2 cut(s)	416, 519
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	129
Bse3DI	GCAATG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	421, 513
BseLI	CCNNNNNNNGG	2 cut(s)	416, 519
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	332
BseX3I	CGGCCG	1 cut(s)	418
Bsh1285I	CGRYCG	2 cut(s)	421, 555
BshFI	GGCC	3 cut(s)	237, 420, 512
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	2 cut(s)	421, 555
BsiHKAI	GWGCWC	1 cut(s)	379
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	2 cut(s)	416, 519
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	3 cut(s)	237, 420, 512
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	2 cut(s)	268, 552
Bsp19I	CCATGG	1 cut(s)	513
BspACI	CCGC	1 cut(s)	602
BspANI	GGCC	3 cut(s)	237, 420, 512
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	2 cut(s)	207, 271
BspLI	GGNNCC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	434
BsrDI	GCAATG	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	416
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	332
BssAI	RCCGGY	1 cut(s)	416
BssECI	CCNNGG	2 cut(s)	421, 513
BssMI	GATC	2 cut(s)	268, 552
BssNAI	GTATAC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	513
Bst1107I	GTATAC	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	281
Bst6I	CTCTTC	1 cut(s)	255
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	418, 623
BstDEI	CTNAG	1 cut(s)	129
BstDSI	CCRYGG	2 cut(s)	421, 513
BstKTI	GATC	2 cut(s)	271, 555
BstMBI	GATC	2 cut(s)	268, 552
BstMCI	CGRYCG	2 cut(s)	421, 555
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	279
BstZ17I	GTATAC	1 cut(s)	428
BstZI	CGGCCG	1 cut(s)	418
Bsu36I	CCTNAGG	1 cut(s)	129
BsuRI	GGCC	3 cut(s)	237, 420, 512
BtgI	CCRYGG	2 cut(s)	421, 513
Cac8I	GCNNGC	2 cut(s)	418, 623
CaiI	CAGNNNCTG	1 cut(s)	152
CciI	TCATGA	2 cut(s)	207, 271
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	2 cut(s)	158, 164
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	4 cut(s)	208, 272, 514, 575
CviJI	RGCY	8 cut(s)	120, 203, 237, 358, 401, 420, 512, 536
CviKI_1	RGCY	8 cut(s)	120, 203, 237, 358, 401, 420, 512, 536
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	2 cut(s)	270, 554
DpnII	GATC	2 cut(s)	268, 552
DraI	TTTAAA	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	418
EagI	CGGCCG	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
EclXI	CGGCCG	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	277
Eco52I	CGGCCG	1 cut(s)	418
Eco81I	CCTNAGG	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	1 cut(s)	513
ErhI	CCWWGG	1 cut(s)	513
FaeI	CATG	4 cut(s)	211, 275, 517, 578
FaiI	YATR	9 cut(s)	113, 209, 240, 273, 312, 428, 515, 540, 576
FalI	AAGNNNNNCTT	4 cut(s)	162, 194, 207, 239
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	4 cut(s)	207, 271, 513, 574
FblI	GTMKAC	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	602
Fsp4HI	GCNGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	237, 420, 512
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	2 cut(s)	158, 164
Hin1II	CATG	4 cut(s)	211, 275, 517, 578
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	4 cut(s)	53, 86, 106, 183
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	3 cut(s)	163, 459, 557
Hpy188III	TCNNGA	3 cut(s)	128, 208, 272
Hpy8I	GTNNAC	1 cut(s)	428
HpyAV	CCTTC	3 cut(s)	227, 334, 502
HpyCH4V	TGCA	5 cut(s)	60, 251, 502, 574, 621
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	4 cut(s)	211, 275, 517, 578
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	268, 552
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	8 cut(s)	138, 141, 266, 293, 345, 357, 430, 607
MaeIII	GTNAC	2 cut(s)	76, 142
MalI	GATC	2 cut(s)	270, 554
MboI	GATC	2 cut(s)	268, 552
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	379
MluCI	AATT	2 cut(s)	365, 460
MmeI	TCCRAC	2 cut(s)	72, 215
MroNI	GCCGGC	1 cut(s)	416
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	579
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	281
MvaI	CCWGG	1 cut(s)	281
NaeI	GCCGGC	1 cut(s)	418
NcoI	CCATGG	1 cut(s)	513
NdeII	GATC	2 cut(s)	268, 552
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	4 cut(s)	211, 275, 517, 578
NlaIV	GGNNCC	1 cut(s)	436
NmuCI	GTSAC	1 cut(s)	142
PagI	TCATGA	2 cut(s)	207, 271
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	4 cut(s)	53, 86, 106, 183
PflMI	CCANNNNNTGG	1 cut(s)	519
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	1 cut(s)	603
Ple19I	CGATCG	1 cut(s)	555
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	152
PvuI	CGATCG	1 cut(s)	555
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
RseI	CAYNNNNRTG	1 cut(s)	579
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	2 cut(s)	268, 552
Sau96I	GGNCC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	379
SetI	ASST	6 cut(s)	65, 135, 279, 360, 436, 443
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	579
Sse9I	AATT	2 cut(s)	365, 460
SsiI	CCGC	1 cut(s)	602
SspI	AATATT	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	513
TaqI	TCGA	1 cut(s)	547
TasI	AATT	2 cut(s)	365, 460
TatI	WGTACW	1 cut(s)	297
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	4 cut(s)	53, 86, 106, 183
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	510
TspGWI	ACGGA	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	277
XapI	RAATTY	2 cut(s)	365, 460
XmiI	GTMKAC	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.