Rh5AG099800

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
9216840 .. 9217124
285 bp
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UTR
Exon/CDS
Intron
Rh5AG099800.1

Sequence Viewer

Length: 285 bp
ATGTTTGATGTTGCAAGGGAAAAACGAGATGCTTGTATCCAAGTTGCAAGGACATGGGAGGAATTTACGGAAGCTCTAAAGCAAAAGAAAATGATCTTGGCTCCTTGGTGTGACGAAAAGGATTTGGAAGAGGATGTGGAAAAACGAACCAAGGATGAAGGTGAAATGGGAGCAGCTAAGTCGCTCTGCACCCCATTTGAGCAGCCTGAACTTGCTGAAGGGACACTTTGCTTTGCCTCTGGAAAGCCAGCAAGGAAGTGGACCTATTGGGGAAGGACTTACTAG

Protein Analysis

94

Amino Acids

10.93

Weight (kDa)

5.08

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ProRS-C_1 PF09180 19 - 94 4.5e-25 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 80, 112
AluBI AGCT 2 cut(s) 74, 176
AluI AGCT 2 cut(s) 74, 176
ApeKI GCWGC 2 cut(s) 173, 202
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 1 cut(s) 261
BbvI GCAGC 2 cut(s) 185, 214
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BciVI GTATCC 1 cut(s) 47
BfaI CTAG 1 cut(s) 283
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 2 cut(s) 174, 203
BlsI GCNGC 2 cut(s) 175, 204
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 104, 150
BseDI CCNNGG 2 cut(s) 104, 150
BseGI GGATG 2 cut(s) 139, 160
BseXI GCAGC 2 cut(s) 185, 214
BsgI GTGCAG 1 cut(s) 172
BslFI GGGAC 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 104, 150
BssMI GATC 1 cut(s) 93
BssT1I CCWWGG 2 cut(s) 104, 150
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 249
BstDEI CTNAG 1 cut(s) 177
BstF5I GGATG 2 cut(s) 139, 160
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 185, 214
BsuI GTATCC 1 cut(s) 47
BtsCI GGATG 2 cut(s) 139, 160
Cac8I GCNNGC 1 cut(s) 249
Cfr13I GGNCC 1 cut(s) 261
CviAII CATG 1 cut(s) 54
CviJI RGCY 5 cut(s) 74, 101, 176, 205, 247
CviKI_1 RGCY 5 cut(s) 74, 101, 176, 205, 247
DdeI CTNAG 1 cut(s) 177
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 2 cut(s) 104, 150
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 237
EcoT14I CCWWGG 2 cut(s) 104, 150
ErhI CCWWGG 2 cut(s) 104, 150
FaeI CATG 1 cut(s) 57
FaiI YATR 1 cut(s) 55
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 174, 203
FokI GGATG 2 cut(s) 146, 167
Fsp4HI GCNGC 2 cut(s) 174, 203
FspBI CTAG 1 cut(s) 283
GluI GCNGC 2 cut(s) 174, 203
Hin1II CATG 1 cut(s) 57
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 261
Hpy188III TCNNGA 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 261
HpyAV CCTTC 3 cut(s) 152, 212, 267
HpyCH4V TGCA 3 cut(s) 14, 47, 189
HpyF3I CTNAG 1 cut(s) 177
Hsp92II CATG 1 cut(s) 57
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 106, 170
LpnPI CCDG 3 cut(s) 219, 225, 261
Lsp1109I GCAGC 2 cut(s) 185, 214
LweI GCATC 1 cut(s) 19
MaeI CTAG 1 cut(s) 283
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 140
MluCI AATT 1 cut(s) 62
MnlI CCTC 3 cut(s) 52, 124, 247
NdeII GATC 1 cut(s) 93
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 110
PkrI GCNGC 2 cut(s) 175, 204
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 261
SatI GCNGC 2 cut(s) 174, 203
Sau3AI GATC 1 cut(s) 93
Sau96I GGNCC 1 cut(s) 261
SetI ASST 4 cut(s) 76, 163, 178, 266
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 1 cut(s) 261
Sse9I AATT 1 cut(s) 62
SspMI CTAG 1 cut(s) 283
StyI CCWWGG 2 cut(s) 104, 150
TasI AATT 1 cut(s) 62
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 173, 202
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 261
XapI RAATTY 1 cut(s) 62
XcmI CCANNNNNNNNNTGG 1 cut(s) 255
XspI CTAG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.