Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013803.1

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

17219 .. 20538

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013803.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

atggctgaactgggtctttcctataagaaggacgagaatttcggagagtggtatcgtcaggttcttcttcgtgccgacatgattggctacactgatatctctgcagaaacagatgaaatggagatagaatcttgcacgtaccctctctttgtaacccgtgattctttggaacgagaaaagaatcacatagagggcttcactcctgaggtcgcttgggtcacagaggctggaaaatcagaattgaaagtgcctgttgcaatccgtccaacaagcgaggctatcatgtatccagatttctctaaaagaatcaggagtcaccttgacttaccatacaagcaaaatcagtgggtcaatgtttttcgttgggagagcaatcctactccatttatcaggagtaaagagtttctttggcaagaaggccatactgcttttgcaacaaaggaagaggcagatcatgaggtccaggagatgttggaactgtacagaaagatatatgaggaatatttggcggttccagttgtgaagggacaaaagaccgagcttgagaaatttgctggtgctctttacaccacaagtgtagaggcttttattcctaatgccggccacggtatacaaggtgccacctcacatcgtatgggtcaaaattttgctaaaatgtttgacatcaagtttgaaaatgaaatgcaagaaaagaccatggtttggcaaaactcttgggcttatactactcgaacaattggagtgatggtgatggtgcatggagatgacagagggttggtaatgccacctaaagtggcaactctgcaggctattgtgattccagttatttacagggatgttgatacagaagccatattggaggcctgcaggaaaactgtagtaaacttgaaaaaagctggttttcgtgttaaggcagatttgagtagaacctctacacctggtcagaagtattggcattgggagatgacaggtgttcctctgaggattgaaattggacagagggatttggacaagaatccagtgcgctttgttcgtcgggacaattcagaaaaagttgacattcctctgaacaataatttggttgagcgagtaaaggacacgttggatagaattcagcaaaacatgtttgacgttgcaagggaaaggcgagatgcttgcatccaagttgcaaggacatgggaagaatttacggaagctctaaaccaaaagaaaatgatcttggctccttggtgtgatgaaatggatgtggaagaggatgtgaaaaaacgaactaagggtgaaggtgaaatgggagcagctaagtctctctgcaccccatttgagcagtctgaacttcctgaagggacactttgctttgcctctggaaagccagcaaggaagtggacctattggggcaggacttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

468

Amino Acids

54.19

Weight (kDa)

5.64

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	702
AccI	GTMKAC	1 cut(s)	610
AciI	CCGC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	5 cut(s)	37, 548, 643, 1110, 1184
AcuI	CTGAAG	1 cut(s)	1359
AfaI	GTAC	2 cut(s)	140, 482
AfiI	CCNNNNNNNGG	2 cut(s)	599, 702
AflIII	ACRYGT	2 cut(s)	1098, 1122
AgsI	TTSAA	4 cut(s)	244, 674, 889, 989
AjnI	CCWGG	2 cut(s)	462, 937
AjuI	GAANNNNNNNTTGG	4 cut(s)	1061, 1093, 1202, 1234
AluBI	AGCT	4 cut(s)	541, 896, 1196, 1298
AluI	AGCT	4 cut(s)	541, 896, 1196, 1298
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	1308
AlwNI	CAGNNNCTG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	418, 601, 861
ApeKI	GCWGC	1 cut(s)	1295
ApoI	RAATTY	5 cut(s)	37, 548, 643, 1110, 1184
ArsI	GACNNNNNNTTYG	4 cut(s)	23, 55, 653, 685
AspLEI	GCGC	1 cut(s)	1026
AspS9I	GGNCC	2 cut(s)	460, 1383
AsuHPI	GGTGA	4 cut(s)	308, 760, 1289, 1295
AvaII	GGWCC	2 cut(s)	460, 1383
AxyI	CCTNAGG	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	617
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	1 cut(s)	1307
BccI	CCATC	2 cut(s)	739, 745
BcgI	CGANNNNNNTGC	2 cut(s)	1137, 1171
BciT130I	CCWGG	2 cut(s)	464, 939
BciVI	GTATCC	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	1308
BfaI	CTAG	1 cut(s)	1405
BfmI	CTRYAG	4 cut(s)	102, 803, 865, 876
BfuI	GTATCC	1 cut(s)	297
BisI	GCNGC	1 cut(s)	1296
BlsI	GCNGC	1 cut(s)	1297
Bme1390I	CCNGG	2 cut(s)	464, 939
Bme18I	GGWCC	2 cut(s)	460, 1383
BmgT120I	GGNCC	2 cut(s)	460, 1383
BmiI	GGNNCC	3 cut(s)	513, 619, 1224
BmrFI	CCNGG	2 cut(s)	464, 939
BmrI	ACTGGG	1 cut(s)	20
BmsI	GCATC	2 cut(s)	1141, 1167
BmuI	ACTGGG	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	563
BsaAI	YACGTR	1 cut(s)	138
BsaJI	CCNNGG	3 cut(s)	604, 696, 1226
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	2 cut(s)	599, 702
Bse118I	RCCGGY	1 cut(s)	599
Bse1I	ACTGG	4 cut(s)	15, 515, 821, 1019
Bse21I	CCTNAGG	1 cut(s)	204
BseBI	CCWGG	2 cut(s)	464, 939
BseDI	CCNNGG	3 cut(s)	604, 696, 1226
BseGI	GGATG	4 cut(s)	841, 1158, 1249, 1261
BseLI	CCNNNNNNNGG	2 cut(s)	599, 702
BseMII	CTCAG	2 cut(s)	195, 971
BseNI	ACTGG	4 cut(s)	15, 515, 821, 1019
BseXI	GCAGC	1 cut(s)	1307
BsgI	GTGCAG	1 cut(s)	1294
BshFI	GGCC	3 cut(s)	420, 603, 863
BshNI	GGYRCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	562
BsiSI	CCGG	1 cut(s)	600
BslFI	GGGAC	3 cut(s)	540, 1052, 1357
BslI	CCNNNNNNNGG	2 cut(s)	599, 702
BsmAI	GTCTC	1 cut(s)	1308
BsmFI	GGGAC	3 cut(s)	540, 1052, 1357
BsnI	GGCC	3 cut(s)	420, 603, 863
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	451, 1215
Bsp19I	CCATGG	1 cut(s)	696
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	3 cut(s)	420, 603, 863
BspCNI	CTCAG	2 cut(s)	196, 972
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	513, 619, 1224
BspMAI	CTGCAG	3 cut(s)	106, 807, 869
BspT107I	GGYRCC	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	599
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	4 cut(s)	15, 515, 821, 1019
BssAI	RCCGGY	1 cut(s)	599
BssECI	CCNNGG	3 cut(s)	604, 696, 1226
BssMI	GATC	2 cut(s)	451, 1215
BssNAI	GTATAC	1 cut(s)	611
BssT1I	CCWWGG	2 cut(s)	696, 1226
Bst1107I	GTATAC	1 cut(s)	611
Bst2UI	CCWGG	2 cut(s)	464, 939
Bst4CI	ACNGT	3 cut(s)	480, 608, 877
Bst6I	CTCTTC	2 cut(s)	438, 1245
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	138
BstC8I	GCNNGC	5 cut(s)	601, 807, 865, 1156, 1371
BstDEI	CTNAG	4 cut(s)	204, 980, 1272, 1299
BstDSI	CCRYGG	2 cut(s)	604, 696
BstF5I	GGATG	4 cut(s)	841, 1158, 1249, 1261
BstHHI	GCGC	1 cut(s)	1026
BstKTI	GATC	2 cut(s)	454, 1218
BstMAI	GTCTC	1 cut(s)	1308
BstMBI	GATC	2 cut(s)	451, 1215
BstNI	CCWGG	2 cut(s)	464, 939
BstNSI	RCATGY	1 cut(s)	1126
BstSCI	CCNGG	2 cut(s)	462, 937
BstSFI	CTRYAG	4 cut(s)	102, 803, 865, 876
BstV1I	GCAGC	1 cut(s)	1307
BstZ17I	GTATAC	1 cut(s)	611
Bsu36I	CCTNAGG	1 cut(s)	204
BsuI	GTATCC	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	420, 603, 863
BtgI	CCRYGG	2 cut(s)	604, 696
BtsCI	GGATG	4 cut(s)	841, 1158, 1249, 1261
BtsIMutI	CAGTG	3 cut(s)	90, 350, 1026
Cac8I	GCNNGC	5 cut(s)	601, 807, 865, 1156, 1371
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	1 cut(s)	1026
Cfr10I	RCCGGY	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	460, 1383
CsiI	ACCWGGT	1 cut(s)	937
Csp6I	GTAC	2 cut(s)	139, 481
CspCI	CAANNNNNGTGG	2 cut(s)	326, 361
CviAII	CATG	7 cut(s)	79, 283, 455, 697, 758, 1123, 1176
CviQI	GTAC	2 cut(s)	139, 481
DdeI	CTNAG	4 cut(s)	204, 980, 1272, 1299
DpnI	GATC	2 cut(s)	453, 1217
DpnII	GATC	2 cut(s)	451, 1215
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	2 cut(s)	438, 1245
EarI	CTCTTC	2 cut(s)	438, 1245
Eco130I	CCWWGG	2 cut(s)	696, 1226
Eco147I	AGGCCT	1 cut(s)	863
Eco32I	GATATC	1 cut(s)	97
Eco47I	GGWCC	2 cut(s)	460, 1383
Eco57I	CTGAAG	1 cut(s)	1359
Eco81I	CCTNAGG	1 cut(s)	204
EcoRI	GAATTC	1 cut(s)	1110
EcoRII	CCWGG	2 cut(s)	462, 937
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	2 cut(s)	696, 1226
ErhI	CCWWGG	2 cut(s)	696, 1226
FaeI	CATG	7 cut(s)	82, 286, 458, 700, 761, 1126, 1179
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 1332, 1364
FaqI	GGGAC	3 cut(s)	540, 1052, 1357
FatI	CATG	7 cut(s)	78, 282, 454, 696, 757, 1122, 1175
FblI	GTMKAC	1 cut(s)	610
Fnu4HI	GCNGC	1 cut(s)	1296
FokI	GGATG	4 cut(s)	848, 1145, 1256, 1268
Fsp4HI	GCNGC	1 cut(s)	1296
FspBI	CTAG	1 cut(s)	1405
GlaI	GCGC	1 cut(s)	1025
GluI	GCNGC	1 cut(s)	1296
HaeIII	GGCC	3 cut(s)	420, 603, 863
HapII	CCGG	1 cut(s)	600
HhaI	GCGC	1 cut(s)	1026
Hin1II	CATG	7 cut(s)	82, 286, 458, 700, 761, 1126, 1179
Hin6I	GCGC	1 cut(s)	1024
HinP1I	GCGC	1 cut(s)	1024
HincII	GTYRAC	1 cut(s)	1057
HindII	GTYRAC	1 cut(s)	1057
HinfI	GANTC	7 cut(s)	128, 161, 181, 306, 313, 817, 1015
HpaII	CCGG	1 cut(s)	600
HphI	GGTGA	4 cut(s)	308, 760, 1289, 1295
Hpy166II	GTNNAC	4 cut(s)	611, 883, 1057, 1383
Hpy188I	TCNGA	7 cut(s)	44, 238, 945, 981, 1048, 1068, 1330
Hpy188III	TCNNGA	8 cut(s)	203, 290, 310, 391, 455, 1037, 1337, 1362
Hpy8I	GTNNAC	4 cut(s)	611, 883, 1057, 1383
Hpy99I	CGWCG	1 cut(s)	1038
HpyAV	CCTTC	5 cut(s)	22, 410, 517, 1274, 1334
HpyCH4III	ACNGT	3 cut(s)	480, 608, 877
HpyCH4IV	ACGT	3 cut(s)	137, 1100, 1131
HpyF3I	CTNAG	4 cut(s)	204, 980, 1272, 1299
HpySE526I	ACGT	3 cut(s)	137, 1100, 1131
Hsp92II	CATG	7 cut(s)	82, 286, 458, 700, 761, 1126, 1179
HspAI	GCGC	1 cut(s)	1024
KroI	GCCGGC	1 cut(s)	599
KroNI	GCCGGC	1 cut(s)	601
Kzo9I	GATC	2 cut(s)	451, 1215
LmnI	GCTCC	2 cut(s)	1228, 1292
Lsp1109I	GCAGC	1 cut(s)	1307
LweI	GCATC	2 cut(s)	1141, 1167
MabI	ACCWGGT	1 cut(s)	937
MaeI	CTAG	1 cut(s)	1405
MaeII	ACGT	3 cut(s)	137, 1100, 1131
MaeIII	GTNAC	3 cut(s)	151, 217, 314
MalI	GATC	2 cut(s)	453, 1217
MboI	GATC	2 cut(s)	451, 1215
MboII	GAAGA	5 cut(s)	56, 59, 455, 1193, 1262
MfeI	CAATTG	1 cut(s)	735
MhlI	GDGCHC	1 cut(s)	562
MlyI	GAGTC	1 cut(s)	322
MmeI	TCCRAC	3 cut(s)	290, 453, 1083
MroNI	GCCGGC	1 cut(s)	599
MseI	TTAA	1 cut(s)	909
MslI	CAYNNNNRTG	1 cut(s)	762
MspI	CCGG	1 cut(s)	600
MspR9I	CCNGG	2 cut(s)	464, 939
MunI	CAATTG	1 cut(s)	735
MvaI	CCWGG	2 cut(s)	464, 939
NaeI	GCCGGC	1 cut(s)	601
NcoI	CCATGG	1 cut(s)	696
NdeII	GATC	2 cut(s)	451, 1215
NgoMIV	GCCGGC	1 cut(s)	599
NlaIII	CATG	7 cut(s)	82, 286, 458, 700, 761, 1126, 1179
NlaIV	GGNNCC	3 cut(s)	513, 619, 1224
NmuCI	GTSAC	2 cut(s)	217, 314
NspI	RCATGY	1 cut(s)	1126
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	863
PciI	ACATGT	1 cut(s)	1122
PdiI	GCCGGC	1 cut(s)	601
PfeI	GAWTC	6 cut(s)	128, 161, 181, 306, 817, 1015
PflMI	CCANNNNNTGG	1 cut(s)	702
PfoI	TCCNGGA	1 cut(s)	462
PkrI	GCNGC	1 cut(s)	1297
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Ppu21I	YACGTR	1 cut(s)	138
PscI	ACATGT	1 cut(s)	1122
Psp6I	CCWGG	2 cut(s)	462, 937
PspGI	CCWGG	2 cut(s)	462, 937
PspN4I	GGNNCC	3 cut(s)	513, 619, 1224
PspPI	GGNCC	2 cut(s)	460, 1383
PstI	CTGCAG	3 cut(s)	106, 807, 869
PstNI	CAGNNNCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	140, 482
RsaNI	GTAC	2 cut(s)	139, 481
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	1 cut(s)	909
SatI	GCNGC	1 cut(s)	1296
Sau3AI	GATC	2 cut(s)	451, 1215
Sau96I	GGNCC	2 cut(s)	460, 1383
SbfI	CCTGCAGG	1 cut(s)	869
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	464, 939
SdaI	CCTGCAGG	1 cut(s)	869
SduI	GDGCHC	1 cut(s)	562
SexAI	ACCWGGT	1 cut(s)	937
SfaNI	GCATC	2 cut(s)	1141, 1167
SfcI	CTRYAG	4 cut(s)	102, 803, 865, 876
SinI	GGWCC	2 cut(s)	460, 1383
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse8387I	CCTGCAGG	1 cut(s)	869
SseBI	AGGCCT	1 cut(s)	863
SsiI	CCGC	1 cut(s)	509
SspI	AATATT	1 cut(s)	503
SspMI	CTAG	1 cut(s)	1405
StuI	AGGCCT	1 cut(s)	863
StyD4I	CCNGG	2 cut(s)	462, 937
StyI	CCWWGG	2 cut(s)	696, 1226
TaaI	ACNGT	3 cut(s)	480, 608, 877
TaiI	ACGT	3 cut(s)	140, 1103, 1134
TaqI	TCGA	1 cut(s)	730
TaqII	GACCGA	1 cut(s)	551
TatI	WGTACW	1 cut(s)	480
TfiI	GAWTC	6 cut(s)	128, 161, 181, 306, 817, 1015
Tru1I	TTAA	1 cut(s)	909
Tru9I	TTAA	1 cut(s)	909
TscAI	CASTG	3 cut(s)	97, 350, 1026
TseFI	GTSAC	2 cut(s)	217, 314
TseI	GCWGC	1 cut(s)	1295
Tsp45I	GTSAC	2 cut(s)	217, 314
TspDTI	ATGAA	3 cut(s)	129, 693, 1251
TspGWI	ACGGA	2 cut(s)	251, 1205
TspRI	CASTG	3 cut(s)	97, 350, 1026
Van91I	CCANNNNNTGG	1 cut(s)	702
VpaK11BI	GGWCC	2 cut(s)	460, 1383
XapI	RAATTY	5 cut(s)	37, 548, 643, 1110, 1184
XceI	RCATGY	1 cut(s)	1126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1377
XmiI	GTMKAC	1 cut(s)	610
XspI	CTAG	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.