Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8250179.1

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 692

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8250179.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

gtgcgctttgttcgtcgggacaattcagaaaaagttgacattcctctgaacaataatttggttgagcgagtaaaggacacgttggatagaattcagcaaaacatgtttgacgttgcaagggaaaggcgagatgcttgtatccaagttgcaaggacatgggaagaatttacggaagctctaaaccaaaagaaaatgatcttggctccttggtgtgatgaaatggatgtggaagaggatgtgaaaaaacgaactaagggtgaaggtgaaatgggagcagctaagtctctctgcaccccatttgagcagtctgaacttcctgaagggacactttgctttgcctctggaaagccagcaaggaagtggacctattggggcaggacttactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

128

Amino Acids

14.96

Weight (kDa)

5.67

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	90, 164
AcuI	CTGAAG	1 cut(s)	339
AflIII	ACRYGT	2 cut(s)	78, 102
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 182, 214
AluBI	AGCT	2 cut(s)	176, 278
AluI	AGCT	2 cut(s)	176, 278
Alw26I	GTCTC	1 cut(s)	288
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	2 cut(s)	90, 164
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	363
AsuHPI	GGTGA	2 cut(s)	269, 275
AvaII	GGWCC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	287
BciVI	GTATCC	1 cut(s)	149
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	385
BfuI	GTATCC	1 cut(s)	149
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	1 cut(s)	204
BmsI	GCATC	1 cut(s)	121
BsaJI	CCNNGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	229, 241
BseXI	GCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	274
BslFI	GGGAC	2 cut(s)	32, 337
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	32, 337
Bsp143I	GATC	1 cut(s)	195
BspLI	GGNNCC	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	225
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	252, 279
BstF5I	GGATG	2 cut(s)	229, 241
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	198
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	106
BstV1I	GCAGC	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	149
BtsCI	GGATG	2 cut(s)	229, 241
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	363
CviAII	CATG	2 cut(s)	103, 156
CviJI	RGCY	4 cut(s)	176, 203, 278, 349
CviKI_1	RGCY	4 cut(s)	176, 203, 278, 349
DdeI	CTNAG	2 cut(s)	252, 279
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	363
Eco57I	CTGAAG	1 cut(s)	339
EcoRI	GAATTC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	2 cut(s)	106, 159
FaiI	YATR	2 cut(s)	104, 157
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	2 cut(s)	32, 337
FatI	CATG	2 cut(s)	102, 155
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	2 cut(s)	236, 248
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	385
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	276
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	106, 159
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HphI	GGTGA	2 cut(s)	269, 275
Hpy166II	GTNNAC	2 cut(s)	37, 363
Hpy188I	TCNGA	3 cut(s)	28, 48, 310
Hpy188III	TCNNGA	3 cut(s)	17, 317, 342
Hpy8I	GTNNAC	2 cut(s)	37, 363
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	2 cut(s)	254, 314
HpyCH4IV	ACGT	2 cut(s)	80, 111
HpyCH4V	TGCA	3 cut(s)	116, 149, 291
HpyF3I	CTNAG	2 cut(s)	252, 279
HpySE526I	ACGT	2 cut(s)	80, 111
Hsp92II	CATG	2 cut(s)	106, 159
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	208, 272
LpnPI	CCDG	4 cut(s)	327, 330, 361, 363
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	385
MaeII	ACGT	2 cut(s)	80, 111
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MboII	GAAGA	2 cut(s)	173, 242
MluCI	AATT	4 cut(s)	22, 55, 90, 164
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	54, 226, 349
NdeII	GATC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	106, 159
NlaIV	GGNNCC	1 cut(s)	204
NspI	RCATGY	1 cut(s)	106
PciI	ACATGT	1 cut(s)	102
PkrI	GCNGC	1 cut(s)	277
PscI	ACATGT	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	363
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	195
Sau96I	GGNCC	1 cut(s)	363
SetI	ASST	6 cut(s)	83, 114, 178, 265, 280, 368
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	1 cut(s)	363
Sse9I	AATT	4 cut(s)	22, 55, 90, 164
SspMI	CTAG	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	206
TaiI	ACGT	2 cut(s)	83, 114
TasI	AATT	4 cut(s)	22, 55, 90, 164
TseI	GCWGC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	2 cut(s)	90, 164
XceI	RCATGY	1 cut(s)	106
XcmI	CCANNNNNNNNNTGG	1 cut(s)	357
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.