Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Forward (+)

8962545 .. 8962817

Gene Structure 273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG108700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTTTGATGTTGCAAGGGAAAAACGAGATGCTTGTATCCAAGTTGCAAGGACATGGGAGGAATTTACGGAAGCTCTAAAGCAAAAGAAAATGATCTTGGCTCCTTGGTGTGACGAAAAGGATGTGAAAAAACGAACCAAGGATGAAGGTGAAATGGGAGCAGCTAAGTCGCTCTGCACCCCATTTGGGCAGCCTGAACTTGCTGAAGGGACACTTTGCTTTGCCTCTGGAAAGCCAGCAAGGAAGTGGACCTATTGGGGAAGGACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

90

Amino Acids

10.37

Weight (kDa)

8.72

Isoelectric Point (pI)

41.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ProRS-C_1	PF09180	19 - 90	7.6e-22	Prolyl-tRNA synthetase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	1 cut(s)	225
AfiI	CCNNNNNNNGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	80, 112
AluBI	AGCT	2 cut(s)	74, 164
AluI	AGCT	2 cut(s)	74, 164
ApeKI	GCWGC	2 cut(s)	161, 190
ApoI	RAATTY	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	173, 202
BcgI	CGANNNNNNTGC	2 cut(s)	150, 184
BciVI	GTATCC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	47
BisI	GCNGC	2 cut(s)	162, 191
BlsI	GCNGC	2 cut(s)	163, 192
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	1 cut(s)	19
BsaJI	CCNNGG	2 cut(s)	104, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
BseDI	CCNNGG	2 cut(s)	104, 138
BseGI	GGATG	2 cut(s)	127, 148
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	173, 202
BsgI	GTGCAG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmFI	GGGAC	1 cut(s)	223
Bsp143I	GATC	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	104, 138
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	104, 138
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	2 cut(s)	127, 148
BstKTI	GATC	1 cut(s)	96
BstMBI	GATC	1 cut(s)	93
BstV1I	GCAGC	2 cut(s)	173, 202
BsuI	GTATCC	1 cut(s)	47
BtsCI	GGATG	2 cut(s)	127, 148
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	249
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	5 cut(s)	74, 101, 164, 193, 235
CviKI_1	RGCY	5 cut(s)	74, 101, 164, 193, 235
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
Eco130I	CCWWGG	2 cut(s)	104, 138
Eco47I	GGWCC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	225
EcoT14I	CCWWGG	2 cut(s)	104, 138
ErhI	CCWWGG	2 cut(s)	104, 138
FaeI	CATG	1 cut(s)	57
FaiI	YATR	1 cut(s)	55
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	1 cut(s)	53
Fnu4HI	GCNGC	2 cut(s)	162, 191
FokI	GGATG	2 cut(s)	134, 155
Fsp4HI	GCNGC	2 cut(s)	162, 191
FspBI	CTAG	1 cut(s)	271
GluI	GCNGC	2 cut(s)	162, 191
Hin1II	CATG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188III	TCNNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	249
HpyAV	CCTTC	3 cut(s)	140, 200, 255
HpyCH4V	TGCA	3 cut(s)	14, 47, 177
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	57
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	106, 158
LpnPI	CCDG	3 cut(s)	207, 213, 249
Lsp1109I	GCAGC	2 cut(s)	173, 202
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MluCI	AATT	1 cut(s)	62
MnlI	CCTC	2 cut(s)	52, 235
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	1 cut(s)	57
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	110
PkrI	GCNGC	2 cut(s)	163, 192
PspN4I	GGNNCC	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	249
SatI	GCNGC	2 cut(s)	162, 191
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	1 cut(s)	249
SetI	ASST	4 cut(s)	76, 151, 166, 254
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	249
Sse9I	AATT	1 cut(s)	62
SspMI	CTAG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	104, 138
TasI	AATT	1 cut(s)	62
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	2 cut(s)	161, 190
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	159
TspGWI	ACGGA	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	1 cut(s)	243
XspI	CTAG	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.