Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000826

Physical Location & Seq

Genomic Coordinates Reverse (-)

19675395 .. 19682772

Gene Structure 7378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGTATCCAGATTTCTCTAAAAGAATCAGGAGTCACCTTGACTTACCATACAAGCAAAATCAGTGGCTCAATGGTGTTCTTTGGGAGGGCAATCCTACTCCATTTATCAGGAGTAAAGAGTTTCTTTGGCAAGAAGGCCATACTGCTTTTGCAACAGAGGAAGAGGCAGATCATGACGTCCAGGAGATATGTGAGGAATATTTGGCGGTTCCAGTTGTGAAGGGACAAAAGACCGAGCTTGAAAAATTCACTGGTGCTCTTTATACCACAAGTGTAGAGGCTTTTATTCCTAATGCCGGCCGCGGTATACAAGGTGCCACCTCACATTGTTTGGGTCAAAATTTTGCTAAAATGTATGACATCAAGTTTGAAAATGAAATGCAAGAAAAGGCCATGGTTTGGCAAAACTCTTGGCCGGGCTTATACTACTCGAACGGTAAGTCTACTTTCTTTATTGGAGTGATGGTGGTGGTGCATGGAGATGACAGAGGGTTGGTAATGCCACCCAAAGTGGCAACTCTGCAGGCTATTGTGATTCCAGTTATTTACAGGGATGTTGATACAGAAGCCATATTGGAGGCCTGCCGGAAAATTGTAGTTACGTTGAAAAAAGCTTGTTTTCGTGTTAAGGCAGATTTGAGTAGAACCTTTACATCTGGTAAGAAGTATTGGCATTATTGGGAGAAGAAAGGTGTTCCTCTGAGGATTGAAATTGGACAGAAGGATTTGGACAAGAATCAAGTGCGCTTTGTTCGTCGAGACAATTTAGAAAAAGTGGACATTCCTCTGAACAGTAATTTGGTTGAGCGAGTGAAGGACACGTTGGATAGAATTCAGCAAAACATGTTTGATGTTGCAAGGGAAAAACGAGATCCTTGTATCCAAGTTGCAAGGACCTGGGATGAATTTATGGAAGCTCTAAACCAAAAGAAAATGATCTTGGCTCCTTGGTGTGATGAAATGGATGTGGAAGAGGATGTGAAAAAAGGAACTAAATGTGAAAGTGAAATGGGAGCAGCTAAGTCTCTCCGCACCCCATTTGAGCAGCCTGAACTTCCTGAAGGGACACTTTGCTTTGCCTCTGGAAAGCCAGCAGGAAAGTGGACCTATTGGGGCAGGACTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon ProRS-C_1 tRNA-synt_2b

Protein Analysis

376

Amino Acids

43.24

Weight (kDa)

6.37

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HGTP_anticodon	PF03129	175 - 272	7.1e-14	Anticodon binding domain
ProRS-C_1	PF09180	300 - 375	3.4e-22	Prolyl-tRNA synthetase, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000826)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62120 AT3G62120 AT3G62120 AT5G10880
fragaria_vesca	FvH4_2g20861 FvH4_2g20862 FvH4_4g21680 FvH4_4g21680 FvH4_6g31250
malus_domestica	MD13G1156800.v1.1 MD16G1134100.v1.1
prunus_persica	Prupe.1G103500_v2.0.a1 Prupe.8G138800_v2.0.a1
pyrus_communis	pycom13g12040 pycom16g11840
rosa_chinensis	RchiOBHm_Chr2g0137801 RchiOBHm_Chr2g0166461 RchiOBHm_Chr4g0427891 RchiOBHm_Chr5g0012951 RchiOBHm_Chr6g0287271
rosa_laevigata	RLG00000007204 RLG00000012508 RLG00000012535 RLG00000019677 RLG00000021620 RLG00000031971
rosa_multiflora	Rmu_co8250179.1_g000001 Rmu_co8250605.1_g000001 Rmu_sc0002170.1_g000001 Rmu_sc0003016.1_g000004 Rmu_sc0005297.1_g000029 Rmu_sc0013803.1_g000009 Rmu_sc0014141.1_g000001
rosa_roxburghii	Rroxscaffold_1G00063640 Rroxscaffold_2G00084890 Rroxscaffold_2G00106800 Rroxscaffold_5G00369540 Rroxscaffold_7G00181590
rosa_rugosa	Rorug02G0346100 Rorug02G0523200 Rorug04G0220200 Rorug04G0220200 Rorug05G0005400 Rorug06G0186400
rosa_samantha	Rh2AG392900 Rh2AG589200 Rh2BG400600 Rh2BG601300 Rh2CG379600 Rh2CG571900 Rh2DG415500 Rh2DG611700 Rh2DG611800 Rh4BG283100 Rh5AG099800 Rh5BG096400 Rh5BG096500 Rh5CG108700 Rh5DG095200 Rh6AG297800 Rh6BG303300 Rh6CG306700 Rh6CG311400 Rh6DG295000
rosa_wichuraiana	Rw2G032190 Rw2G049100 Rw4G024090 Rw6G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	314
AccB7I	CCANNNNNTGG	1 cut(s)	399
AccI	GTMKAC	2 cut(s)	307, 443
AccII	CGCG	1 cut(s)	303
AciI	CCGC	4 cut(s)	206, 301, 303, 1030
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	2 cut(s)	298, 413
AcsI	RAATTY	4 cut(s)	245, 340, 831, 905
AcuI	CTGAAG	1 cut(s)	1080
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	2 cut(s)	296, 399
AflIII	ACRYGT	2 cut(s)	819, 843
AgsI	TTSAA	4 cut(s)	242, 371, 607, 710
AjnI	CCWGG	2 cut(s)	180, 896
AjuI	GAANNNNNNNTTGG	6 cut(s)	782, 806, 814, 838, 923, 955
AluBI	AGCT	4 cut(s)	238, 614, 917, 1019
AluI	AGCT	4 cut(s)	238, 614, 917, 1019
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	2 cut(s)	753, 1029
AlwI	GGATC	1 cut(s)	866
AoxI	GGCC	5 cut(s)	136, 298, 390, 413, 579
ApeKI	GCWGC	2 cut(s)	1016, 1045
ApoI	RAATTY	4 cut(s)	245, 340, 831, 905
ArsI	GACNNNNNNTTYG	4 cut(s)	350, 382, 425, 457
AspLEI	GCGC	1 cut(s)	747
AspS9I	GGNCC	2 cut(s)	894, 1104
AsuC2I	CCSGG	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	26
AvaII	GGWCC	2 cut(s)	894, 1104
BanI	GGYRCC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	2 cut(s)	1028, 1057
BccI	CCATC	1 cut(s)	457
BciT130I	CCWGG	2 cut(s)	182, 898
BciVI	GTATCC	2 cut(s)	15, 890
BcnI	CCSGG	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	753, 1029
BfaI	CTAG	1 cut(s)	1126
BfmI	CTRYAG	1 cut(s)	521
BfuI	GTATCC	2 cut(s)	15, 890
BisI	GCNGC	3 cut(s)	301, 1017, 1046
BlsI	GCNGC	3 cut(s)	302, 1018, 1047
Bme1390I	CCNGG	3 cut(s)	182, 417, 898
Bme18I	GGWCC	2 cut(s)	894, 1104
BmgT120I	GGNCC	2 cut(s)	894, 1104
BmiI	GGNNCC	3 cut(s)	210, 316, 945
BmrFI	CCNGG	3 cut(s)	182, 417, 898
BpuMI	CCSGG	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	4 cut(s)	301, 393, 897, 947
BsaXI	ACNNNNNCTCC	2 cut(s)	450, 480
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 399
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	212, 256, 539
BseBI	CCWGG	2 cut(s)	182, 898
BseDI	CCNNGG	4 cut(s)	301, 393, 897, 947
BseGI	GGATG	4 cut(s)	559, 907, 970, 982
BseLI	CCNNNNNNNGG	2 cut(s)	296, 399
BseMII	CTCAG	1 cut(s)	692
BseNI	ACTGG	3 cut(s)	212, 256, 539
BseX3I	CGGCCG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	1028, 1057
Bsh1236I	CGCG	1 cut(s)	303
Bsh1285I	CGRYCG	1 cut(s)	301
BshFI	GGCC	5 cut(s)	138, 300, 392, 415, 581
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	3 cut(s)	297, 416, 586
BslFI	GGGAC	2 cut(s)	237, 1078
BslI	CCNNNNNNNGG	2 cut(s)	296, 399
BsmAI	GTCTC	2 cut(s)	753, 1029
BsmFI	GGGAC	2 cut(s)	237, 1078
BsnI	GGCC	5 cut(s)	138, 300, 392, 415, 581
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	169, 871, 936
Bsp19I	CCATGG	1 cut(s)	393
BspACI	CCGC	4 cut(s)	206, 301, 303, 1030
BspANI	GGCC	5 cut(s)	138, 300, 392, 415, 581
BspCNI	CTCAG	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	3 cut(s)	210, 316, 945
BspMAI	CTGCAG	1 cut(s)	525
BspPI	GGATC	1 cut(s)	866
BspT107I	GGYRCC	1 cut(s)	314
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	3 cut(s)	212, 256, 539
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	4 cut(s)	301, 393, 897, 947
BssMI	GATC	3 cut(s)	169, 871, 936
BssNAI	GTATAC	1 cut(s)	308
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	393, 947
Bst1107I	GTATAC	1 cut(s)	308
Bst2UI	CCWGG	2 cut(s)	182, 898
Bst4CI	ACNGT	2 cut(s)	437, 794
Bst6I	CTCTTC	2 cut(s)	156, 966
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	4 cut(s)	298, 525, 583, 1092
BstDEI	CTNAG	2 cut(s)	701, 1020
BstDSI	CCRYGG	2 cut(s)	301, 393
BstF5I	GGATG	4 cut(s)	559, 907, 970, 982
BstFNI	CGCG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	747
BstKTI	GATC	3 cut(s)	172, 874, 939
BstMAI	GTCTC	2 cut(s)	753, 1029
BstMBI	GATC	3 cut(s)	169, 871, 936
BstMCI	CGRYCG	1 cut(s)	301
BstNI	CCWGG	2 cut(s)	182, 898
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	3 cut(s)	180, 415, 896
BstSFI	CTRYAG	1 cut(s)	521
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	2 cut(s)	1028, 1057
BstX2I	RGATCY	1 cut(s)	871
BstYI	RGATCY	1 cut(s)	871
BstZ17I	GTATAC	1 cut(s)	308
BstZI	CGGCCG	1 cut(s)	298
BsuI	GTATCC	2 cut(s)	15, 890
BsuRI	GGCC	5 cut(s)	138, 300, 392, 415, 581
BtgI	CCRYGG	2 cut(s)	301, 393
BtsCI	GGATG	4 cut(s)	559, 907, 970, 982
BtsIMutI	CAGTG	2 cut(s)	68, 249
Cac8I	GCNNGC	4 cut(s)	298, 525, 583, 1092
CciI	TCATGA	1 cut(s)	172
CfoI	GCGC	1 cut(s)	747
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	2 cut(s)	894, 1104
Cfr42I	CCGCGG	1 cut(s)	304
CspCI	CAANNNNNGTGG	2 cut(s)	44, 79
CviAII	CATG	4 cut(s)	173, 394, 476, 844
DdeI	CTNAG	2 cut(s)	701, 1020
DpnI	GATC	3 cut(s)	171, 873, 938
DpnII	GATC	3 cut(s)	169, 871, 936
EaeI	YGGCCR	2 cut(s)	298, 413
EagI	CGGCCG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	156, 966
EarI	CTCTTC	2 cut(s)	156, 966
EclXI	CGGCCG	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	393, 947
Eco147I	AGGCCT	1 cut(s)	581
Eco47I	GGWCC	2 cut(s)	894, 1104
Eco52I	CGGCCG	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	1080
EcoO109I	RGGNCCY	1 cut(s)	894
EcoRI	GAATTC	1 cut(s)	831
EcoRII	CCWGG	2 cut(s)	180, 896
EcoT14I	CCWWGG	2 cut(s)	393, 947
ErhI	CCWWGG	2 cut(s)	393, 947
FaeI	CATG	4 cut(s)	176, 397, 479, 847
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 1053, 1085
FaqI	GGGAC	2 cut(s)	237, 1078
FatI	CATG	4 cut(s)	172, 393, 475, 843
FblI	GTMKAC	2 cut(s)	307, 443
Fnu4HI	GCNGC	3 cut(s)	301, 1017, 1046
FokI	GGATG	4 cut(s)	566, 914, 977, 989
Fsp4HI	GCNGC	3 cut(s)	301, 1017, 1046
FspBI	CTAG	1 cut(s)	1126
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	3 cut(s)	301, 1017, 1046
HaeIII	GGCC	5 cut(s)	138, 300, 392, 415, 581
HapII	CCGG	3 cut(s)	297, 416, 586
HhaI	GCGC	1 cut(s)	747
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	176, 397, 479, 847
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	612
HinfI	GANTC	4 cut(s)	24, 31, 535, 736
HpaII	CCGG	3 cut(s)	297, 416, 586
HphI	GGTGA	1 cut(s)	26
Hpy166II	GTNNAC	4 cut(s)	308, 444, 778, 1104
Hpy188I	TCNGA	2 cut(s)	702, 789
Hpy188III	TCNNGA	7 cut(s)	8, 28, 109, 173, 758, 1058, 1083
Hpy8I	GTNNAC	4 cut(s)	308, 444, 778, 1104
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	5 cut(s)	128, 214, 715, 808, 1055
HpyCH4III	ACNGT	2 cut(s)	437, 794
HpyCH4IV	ACGT	3 cut(s)	177, 602, 821
HpyCH4V	TGCA	6 cut(s)	152, 382, 475, 523, 857, 890
HpyF3I	CTNAG	2 cut(s)	701, 1020
HpySE526I	ACGT	3 cut(s)	177, 602, 821
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	4 cut(s)	176, 397, 479, 847
HspAI	GCGC	1 cut(s)	745
KroI	GCCGGC	1 cut(s)	296
KroNI	GCCGGC	1 cut(s)	298
KspI	CCGCGG	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	169, 871, 936
LmnI	GCTCC	2 cut(s)	949, 1013
Lsp1109I	GCAGC	2 cut(s)	1028, 1057
MaeI	CTAG	1 cut(s)	1126
MaeII	ACGT	3 cut(s)	177, 602, 821
MaeIII	GTNAC	2 cut(s)	32, 598
MalI	GATC	3 cut(s)	171, 873, 938
MboI	GATC	3 cut(s)	169, 871, 936
MboII	GAAGA	3 cut(s)	173, 697, 983
MflI	RGATCY	1 cut(s)	871
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	8 cut(s)	245, 340, 591, 711, 763, 796, 831, 905
MlyI	GAGTC	1 cut(s)	40
MmeI	TCCRAC	1 cut(s)	804
MroNI	GCCGGC	1 cut(s)	296
MseI	TTAA	1 cut(s)	627
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	3 cut(s)	297, 416, 586
MspR9I	CCNGG	3 cut(s)	182, 417, 898
MvaI	CCWGG	2 cut(s)	182, 898
MvnI	CGCG	1 cut(s)	303
NaeI	GCCGGC	1 cut(s)	298
NciI	CCSGG	1 cut(s)	417
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	3 cut(s)	169, 871, 936
NgoMIV	GCCGGC	1 cut(s)	296
NlaIII	CATG	4 cut(s)	176, 397, 479, 847
NlaIV	GGNNCC	3 cut(s)	210, 316, 945
NmuCI	GTSAC	1 cut(s)	32
NspI	RCATGY	1 cut(s)	847
PagI	TCATGA	1 cut(s)	172
PceI	AGGCCT	1 cut(s)	581
PciI	ACATGT	1 cut(s)	843
PdiI	GCCGGC	1 cut(s)	298
PfeI	GAWTC	3 cut(s)	24, 535, 736
PflMI	CCANNNNNTGG	1 cut(s)	399
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	3 cut(s)	302, 1018, 1047
PleI	GAGTC	1 cut(s)	39
PpsI	GAGTC	1 cut(s)	39
PpuMI	RGGWCCY	1 cut(s)	894
PscI	ACATGT	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	894
Psp6I	CCWGG	2 cut(s)	180, 896
PspGI	CCWGG	2 cut(s)	180, 896
PspN4I	GGNNCC	3 cut(s)	210, 316, 945
PspPI	GGNCC	2 cut(s)	894, 1104
PspPPI	RGGWCCY	1 cut(s)	894
PstI	CTGCAG	1 cut(s)	525
PsuI	RGATCY	1 cut(s)	871
RseI	CAYNNNNRTG	1 cut(s)	480
SacII	CCGCGG	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	627
SatI	GCNGC	3 cut(s)	301, 1017, 1046
Sau3AI	GATC	3 cut(s)	169, 871, 936
Sau96I	GGNCC	2 cut(s)	894, 1104
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	3 cut(s)	182, 417, 898
SduI	GDGCHC	1 cut(s)	259
SfcI	CTRYAG	1 cut(s)	521
Sfr303I	CCGCGG	1 cut(s)	304
SgrBI	CCGCGG	1 cut(s)	304
SinI	GGWCC	2 cut(s)	894, 1104
SmiMI	CAYNNNNRTG	1 cut(s)	480
Sse9I	AATT	8 cut(s)	245, 340, 591, 711, 763, 796, 831, 905
SseBI	AGGCCT	1 cut(s)	581
SsiI	CCGC	4 cut(s)	206, 301, 303, 1030
SspI	AATATT	1 cut(s)	200
SspMI	CTAG	1 cut(s)	1126
StuI	AGGCCT	1 cut(s)	581
StyD4I	CCNGG	3 cut(s)	180, 415, 896
StyI	CCWWGG	2 cut(s)	393, 947
TaaI	ACNGT	2 cut(s)	437, 794
TaiI	ACGT	3 cut(s)	180, 605, 824
TaqI	TCGA	2 cut(s)	431, 757
TaqII	GACCGA	1 cut(s)	248
TasI	AATT	8 cut(s)	245, 340, 591, 711, 763, 796, 831, 905
TauI	GCSGC	1 cut(s)	303
TfiI	GAWTC	3 cut(s)	24, 535, 736
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	2 cut(s)	68, 256
TseFI	GTSAC	1 cut(s)	32
TseI	GCWGC	2 cut(s)	1016, 1045
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	3 cut(s)	390, 918, 972
TspRI	CASTG	2 cut(s)	68, 256
Van91I	CCANNNNNTGG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	894, 1104
XapI	RAATTY	4 cut(s)	245, 340, 831, 905
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1098
XmiI	GTMKAC	2 cut(s)	307, 443
XspI	CTAG	1 cut(s)	1126
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.