RchiOBHm_Chr2g0166461

proline--tRNA ligase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
81107389 .. 81108855
1467 bp
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UTR
Exon/CDS
Intron
PRQ53434

Sequence Viewer

Length: 1467 bp
ATGGCTGACACCGGTGGCATTGGTTTAACCAAGAAGAAGGATGAGAATTTCGGAGAGTGGTATTCGGAGGTTGTTGTTCACGGTGAGATGATTGAGTACTACAACATCTCAGGATGTTATATTTTGAGGCCATGGACAATGGCAATATGGGAGACCATGCAAGCATTCTTCAATGCAGAAATAAAAAAAATGAAGATTAAAAATTGCTACTTTCCTTTGTTAGTCTCCCCTGCTGTTCTGGAAAAAGAGAAGGATCATATAGCGGAGTCAGAGGTTGCTTGGGTCACGAAGTATGGAAAATCTGATTTGAAAGTGCCTATTGCAGTCCGTCCAACGAGTGAGACTGTTATGTATCCTTATTACTCAGAGTGGATTAGGGGACACCGTGACTTACCATTGAAGTTAAATCAGTGGTGCAATGTAGTTCGATGGGAGTCTAGCAATCCCACTCCATTTATCAGGAGTCGGGAGTTTCTTTGGCAAGAAGGCCACACAGCTTTTGCAACAAAGGAAGAGGCAGATAAAGAGGTCCTTGAGATATTGGAACTGTACAGAAGGATATATGAAGAATATTTGGCAATTCCAGTTGTGAAGGGAAGAAAGAGTGAGAATGAGAAATTTGCTGGTGGTCTTTACACCACAAGTGTGGAGGCTTTTGTTCCAAATACTGGCCGCAGCGTACAAGGAGCCACTTCACATTGTCTGGGTCAAAACTTTGCTAAAATGTTCGACATTACTTATGAGAATGAAAAGGGAGAAAAAGCAATGATTTGGCAAAACTCTTGGGCTTATAGTACTCGAACGATTGGAGTGATGGTAATGGTGCATGGAGATGACAAAGGCTTGGTATTGCCACCAAAGGTAGCATCTATCCAGGTCATTGTGATTCCAGTGCCTTTCAAGGACGCTGATACACAAGCCATATTTGATGCCTGCTCGAAAACTGTGGAGGAGTTGAGTGAAGCTGGATTTCGTGTTGAGGCTGATTTGAGGGACAACTACTCGCCTGAATGGAAGCATTCACACTGGGAATTGAAAGGTGTTCCTCTAAGGATTGAAATTGGACTGAAGGATTTGGAGAAGAAACAAGTAGTCTGTGTTCGGCGTGACAACTCTGCGAAAGTGGACATTCCTATAGTCGACTTGGTCAAGGAAGTGAAAGACATGCTTGATAAAATTCAACAAAATCTCTTTGATGTTGCAAAACAAAAACGAGATGCTTCTGTCCAGGTTGCCGGAACATGGGATGAATTCACGGTAGCCTTGAGCAACAAGAAATTGATCCTGGCTCCTTGGTGTGATGAACAGGAAGTAGAAGAGGATGTCAAAGCGAGAACAAAGGGTGAAATTGGAGCAGCAATGTCACTCTGCTCTCCCTTTGACCAACCCCAACTCCCTGAAGGGACGCTTTGCTTTGCATCCGGAAAGCCAGCAAAAAAGTGGACCTACTGGGGGAGGAGCTACTAA

Protein Analysis

488

Amino Acids

55.75

Weight (kDa)

5.72

Isoelectric Point (pI)

38.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_2b PF00587 107 - 273 1.6e-21 tRNA synthetase class II core domain (G, H, P, S and T)
HGTP_anticodon PF03129 292 - 388 5e-22 Anticodon binding domain
ProRS-C_1 PF09180 415 - 488 1.4e-23 Prolyl-tRNA synthetase, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 668
AccI GTMKAC 1 cut(s) 1140
AccIII TCCGGA 1 cut(s) 1421
AciI CCGC 2 cut(s) 263, 673
AclWI GGATC 2 cut(s) 261, 1276
AcoI YGGCCR 1 cut(s) 670
AcsI RAATTY 4 cut(s) 46, 617, 1176, 1250
AcuI CTGAAG 2 cut(s) 1088, 1419
AfaI GTAC 4 cut(s) 98, 551, 681, 796
AfiI CCNNNNNNNGG 3 cut(s) 668, 1242, 1452
AgeI ACCGGT 1 cut(s) 11
AgsI TTSAA 7 cut(s) 172, 310, 400, 901, 1036, 1058, 1181
AjnI CCWGG 3 cut(s) 873, 1227, 1284
AleI CACNNNNGTG 1 cut(s) 644
AluBI AGCT 3 cut(s) 497, 965, 1461
AluI AGCT 3 cut(s) 497, 965, 1461
Alw26I GTCTC 3 cut(s) 146, 229, 335
AlwI GGATC 2 cut(s) 261, 1276
Aor13HI TCCGGA 1 cut(s) 1421
AoxI GGCC 3 cut(s) 128, 487, 670
ApeKI GCWGC 2 cut(s) 675, 1355
ApoI RAATTY 4 cut(s) 46, 617, 1176, 1250
AsiGI ACCGGT 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 529, 1443
AsuHPI GGTGA 2 cut(s) 95, 1355
AvaII GGWCC 2 cut(s) 529, 1443
BbvI GCAGC 2 cut(s) 687, 1367
BccI CCATC 2 cut(s) 423, 808
BciT130I CCWGG 3 cut(s) 875, 1229, 1286
BciVI GTATCC 1 cut(s) 363
BcoDI GTCTC 3 cut(s) 146, 229, 335
BfaI CTAG 1 cut(s) 438
BfmI CTRYAG 1 cut(s) 1134
BfuI GTATCC 1 cut(s) 363
BisI GCNGC 3 cut(s) 673, 676, 1356
BlsI GCNGC 3 cut(s) 674, 677, 1357
BmcAI AGTACT 2 cut(s) 98, 796
Bme1390I CCNGG 3 cut(s) 875, 1229, 1286
Bme18I GGWCC 2 cut(s) 529, 1443
BmgT120I GGNCC 2 cut(s) 529, 1443
BmiI GGNNCC 2 cut(s) 688, 1290
BmrFI CCNGG 3 cut(s) 875, 1229, 1286
BmrI ACTGGG 2 cut(s) 1036, 1459
BmsI GCATC 4 cut(s) 875, 919, 1207, 1427
BmuI ACTGGG 2 cut(s) 1036, 1459
BpuEI CTTGAG 2 cut(s) 554, 1285
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 2 cut(s) 131, 1292
BsaWI WCCGGW 2 cut(s) 11, 1421
BsaXI ACNNNNNCTCC 4 cut(s) 801, 831, 1377, 1407
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 1242, 1452
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 5 cut(s) 584, 673, 890, 1031, 1454
Bse3DI GCAATG 3 cut(s) 424, 771, 1365
BseAI TCCGGA 1 cut(s) 1421
BseBI CCWGG 3 cut(s) 875, 1229, 1286
BseDI CCNNGG 2 cut(s) 131, 1292
BseGI GGATG 5 cut(s) 46, 119, 1252, 1327, 1418
BseLI CCNNNNNNNGG 3 cut(s) 668, 1242, 1452
BseMI GCAATG 3 cut(s) 424, 771, 1365
BseMII CTCAG 2 cut(s) 123, 378
BseNI ACTGG 5 cut(s) 584, 673, 890, 1031, 1454
BseRI GAGGAG 1 cut(s) 965
BseXI GCAGC 2 cut(s) 687, 1367
BshFI GGCC 3 cut(s) 130, 489, 672
BshTI ACCGGT 1 cut(s) 11
BsiSI CCGG 3 cut(s) 12, 1236, 1422
BslFI GGGAC 3 cut(s) 393, 1007, 1417
BslI CCNNNNNNNGG 3 cut(s) 668, 1242, 1452
BsmAI GTCTC 3 cut(s) 146, 229, 335
BsmFI GGGAC 3 cut(s) 393, 1007, 1417
BsmI GAATGC 2 cut(s) 164, 1018
BsnI GGCC 3 cut(s) 130, 489, 672
Bso31I GGTCTC 1 cut(s) 146
Bsp13I TCCGGA 1 cut(s) 1421
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 2 cut(s) 253, 1281
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 2 cut(s) 263, 673
BspANI GGCC 3 cut(s) 130, 489, 672
BspCNI CTCAG 2 cut(s) 122, 377
BspEI TCCGGA 1 cut(s) 1421
BspLI GGNNCC 2 cut(s) 688, 1290
BspPI GGATC 2 cut(s) 261, 1276
BspTNI GGTCTC 1 cut(s) 146
BsrDI GCAATG 3 cut(s) 424, 771, 1365
BsrFI RCCGGY 1 cut(s) 11
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 5 cut(s) 584, 673, 890, 1031, 1454
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 2 cut(s) 131, 1292
BssMI GATC 2 cut(s) 253, 1281
BssT1I CCWWGG 2 cut(s) 131, 1292
Bst2UI CCWGG 3 cut(s) 875, 1229, 1286
Bst4CI ACNGT 6 cut(s) 83, 346, 386, 549, 946, 1258
Bst6I CTCTTC 2 cut(s) 507, 1311
BstAUI TGTACA 1 cut(s) 549
BstC8I GCNNGC 3 cut(s) 162, 934, 1431
BstDEI CTNAG 3 cut(s) 109, 364, 1049
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 5 cut(s) 46, 119, 1252, 1327, 1418
BstKTI GATC 2 cut(s) 256, 1284
BstMAI GTCTC 3 cut(s) 146, 229, 335
BstMBI GATC 2 cut(s) 253, 1281
BstNI CCWGG 3 cut(s) 875, 1229, 1286
BstNSI RCATGY 1 cut(s) 1168
BstSCI CCNGG 3 cut(s) 873, 1227, 1284
BstSFI CTRYAG 1 cut(s) 1134
BstV1I GCAGC 2 cut(s) 687, 1367
BstXI CCANNNNNNTGG 1 cut(s) 646
BsuI GTATCC 1 cut(s) 363
BsuRI GGCC 3 cut(s) 130, 489, 672
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 5 cut(s) 46, 119, 1252, 1327, 1418
BtsIMutI CAGTG 3 cut(s) 416, 897, 1024
Cac8I GCNNGC 3 cut(s) 162, 934, 1431
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 529, 1443
CseI GACGC 2 cut(s) 914, 1414
Csp6I GTAC 4 cut(s) 97, 550, 680, 795
CspAI ACCGGT 1 cut(s) 11
CviAII CATG 5 cut(s) 132, 157, 827, 1165, 1242
CviQI GTAC 4 cut(s) 97, 550, 680, 795
DdeI CTNAG 3 cut(s) 109, 364, 1049
DpnI GATC 2 cut(s) 255, 1283
DpnII GATC 2 cut(s) 253, 1281
EaeI YGGCCR 1 cut(s) 670
Eam1104I CTCTTC 2 cut(s) 507, 1311
EarI CTCTTC 2 cut(s) 507, 1311
Eco130I CCWWGG 2 cut(s) 131, 1292
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 2 cut(s) 529, 1443
Eco57I CTGAAG 2 cut(s) 1088, 1419
EcoO109I RGGNCCY 1 cut(s) 529
EcoRI GAATTC 1 cut(s) 1250
EcoRII CCWGG 3 cut(s) 873, 1227, 1284
EcoT14I CCWWGG 2 cut(s) 131, 1292
ErhI CCWWGG 2 cut(s) 131, 1292
FaeI CATG 5 cut(s) 135, 160, 830, 1168, 1245
FalI AAGNNNNNCTT 6 cut(s) 516, 548, 1152, 1184, 1392, 1424
FaqI GGGAC 3 cut(s) 393, 1007, 1417
FatI CATG 5 cut(s) 131, 156, 826, 1164, 1241
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 3 cut(s) 673, 676, 1356
FokI GGATG 5 cut(s) 53, 126, 1259, 1334, 1405
Fsp4HI GCNGC 3 cut(s) 673, 676, 1356
FspBI CTAG 1 cut(s) 438
GluI GCNGC 3 cut(s) 673, 676, 1356
HaeIII GGCC 3 cut(s) 130, 489, 672
HapII CCGG 3 cut(s) 12, 1236, 1422
HgaI GACGC 2 cut(s) 914, 1414
Hin1II CATG 5 cut(s) 135, 160, 830, 1168, 1245
HincII GTYRAC 1 cut(s) 1141
HindII GTYRAC 1 cut(s) 1141
HinfI GANTC 4 cut(s) 266, 434, 463, 886
HpaII CCGG 3 cut(s) 12, 1236, 1422
HphI GGTGA 2 cut(s) 95, 1355
Hpy166II GTNNAC 4 cut(s) 79, 1126, 1141, 1443
Hpy188I TCNGA 5 cut(s) 53, 67, 271, 304, 367
Hpy188III TCNNGA 6 cut(s) 111, 239, 286, 460, 467, 1422
Hpy8I GTNNAC 4 cut(s) 79, 1126, 1141, 1443
HpyAV CCTTC 7 cut(s) 31, 244, 479, 549, 586, 1063, 1394
HpyCH4III ACNGT 6 cut(s) 83, 346, 386, 549, 946, 1258
HpyCH4V TGCA 8 cut(s) 160, 176, 323, 417, 503, 826, 1202, 1418
HpyF3I CTNAG 3 cut(s) 109, 364, 1049
Hsp92II CATG 5 cut(s) 135, 160, 830, 1168, 1245
Kpn2I TCCGGA 1 cut(s) 1421
Kzo9I GATC 2 cut(s) 253, 1281
LmnI GCTCC 4 cut(s) 686, 1294, 1352, 1458
Lsp1109I GCAGC 2 cut(s) 687, 1367
LweI GCATC 4 cut(s) 875, 919, 1207, 1427
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 4 cut(s) 283, 386, 1106, 1362
MalI GATC 2 cut(s) 255, 1283
MboI GATC 2 cut(s) 253, 1281
MboII GAAGA 8 cut(s) 46, 160, 205, 524, 578, 609, 1093, 1328
MlyI GAGTC 3 cut(s) 275, 443, 472
MmeI TCCRAC 1 cut(s) 356
MroI TCCGGA 1 cut(s) 1421
MseI TTAA 3 cut(s) 26, 198, 404
MslI CAYNNNNRTG 2 cut(s) 644, 831
MspI CCGG 3 cut(s) 12, 1236, 1422
MspR9I CCNGG 3 cut(s) 875, 1229, 1286
Mva1269I GAATGC 2 cut(s) 164, 1018
MvaI CCWGG 3 cut(s) 875, 1229, 1286
NcoI CCATGG 1 cut(s) 131
NdeII GATC 2 cut(s) 253, 1281
NlaIII CATG 5 cut(s) 135, 160, 830, 1168, 1245
NlaIV GGNNCC 2 cut(s) 688, 1290
NmuCI GTSAC 4 cut(s) 283, 386, 1106, 1362
NspI RCATGY 1 cut(s) 1168
OliI CACNNNNGTG 1 cut(s) 644
PctI GAATGC 2 cut(s) 164, 1018
PfeI GAWTC 1 cut(s) 886
PflFI GACNNNGTC 1 cut(s) 1145
PflMI CCANNNNNTGG 1 cut(s) 668
PinAI ACCGGT 1 cut(s) 11
PkrI GCNGC 3 cut(s) 674, 677, 1357
PleI GAGTC 3 cut(s) 274, 442, 471
PpsI GAGTC 3 cut(s) 274, 442, 471
PpuMI RGGWCCY 1 cut(s) 529
Psp5II RGGWCCY 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 873, 1227, 1284
PspGI CCWGG 3 cut(s) 873, 1227, 1284
PspN4I GGNNCC 2 cut(s) 688, 1290
PspPI GGNCC 2 cut(s) 529, 1443
PspPPI RGGWCCY 1 cut(s) 529
PsrI GAACNNNNNNTAC 2 cut(s) 1083, 1115
PsyI GACNNNGTC 1 cut(s) 1145
RsaI GTAC 4 cut(s) 98, 551, 681, 796
RsaNI GTAC 4 cut(s) 97, 550, 680, 795
RseI CAYNNNNRTG 2 cut(s) 644, 831
SalI GTCGAC 1 cut(s) 1139
SaqAI TTAA 3 cut(s) 26, 198, 404
SatI GCNGC 3 cut(s) 673, 676, 1356
Sau3AI GATC 2 cut(s) 253, 1281
Sau96I GGNCC 2 cut(s) 529, 1443
ScaI AGTACT 2 cut(s) 98, 796
SchI GAGTC 3 cut(s) 275, 443, 472
ScrFI CCNGG 3 cut(s) 875, 1229, 1286
SfaNI GCATC 4 cut(s) 875, 919, 1207, 1427
SfcI CTRYAG 1 cut(s) 1134
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 2 cut(s) 529, 1443
SmiMI CAYNNNNRTG 2 cut(s) 644, 831
SmlI CTYRAG 2 cut(s) 533, 1264
SmoI CTYRAG 2 cut(s) 533, 1264
SsiI CCGC 2 cut(s) 263, 673
SspI AATATT 1 cut(s) 572
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 3 cut(s) 873, 1227, 1284
StyI CCWWGG 2 cut(s) 131, 1292
TaaI ACNGT 6 cut(s) 83, 346, 386, 549, 946, 1258
TaqI TCGA 5 cut(s) 427, 729, 799, 938, 1140
TatI WGTACW 3 cut(s) 96, 549, 794
TauI GCSGC 1 cut(s) 675
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 3 cut(s) 26, 198, 404
Tru9I TTAA 3 cut(s) 26, 198, 404
TscAI CASTG 3 cut(s) 416, 897, 1031
TseFI GTSAC 4 cut(s) 283, 386, 1106, 1362
TseI GCWGC 2 cut(s) 675, 1355
Tsp45I GTSAC 4 cut(s) 283, 386, 1106, 1362
TspDTI ATGAA 5 cut(s) 206, 579, 762, 1263, 1317
TspGWI ACGGA 1 cut(s) 317
TspRI CASTG 3 cut(s) 416, 897, 1031
Tth111I GACNNNGTC 1 cut(s) 1145
Van91I CCANNNNNTGG 1 cut(s) 668
VpaK11BI GGWCC 2 cut(s) 529, 1443
XapI RAATTY 4 cut(s) 46, 617, 1176, 1250
XceI RCATGY 1 cut(s) 1168
XcmI CCANNNNNNNNNTGG 1 cut(s) 1437
XmiI GTMKAC 1 cut(s) 1140
XspI CTAG 1 cut(s) 438
ZrmI AGTACT 2 cut(s) 98, 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.