Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006277

Physical Location & Seq

Genomic Coordinates Forward (+)

9912200 .. 9919002

Gene Structure 6803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031970

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1755 bp

ATGGCTGTGAATTTGGGAGTTTTAACTGTGTTTACTGGAGTTGGAGCTTTTTGTAGGGTTTTTCAGTTCGAGTGGGGTGCCAAAGGAGGCATCTGTGCTGATTGTTGCCACGTCATTATTATCTTTGATCTGATACTAGAAACAGACACAGACACAGACACGTTGGGGCATCATCTCACTACCAAACAAGTCAAGATTGTGGTGCTTATCACAAGTACAGATCAAATGCCATCTTTAAAAATGAAGGCTCAATCAAGCACAGGATGTTTAAAAGAGAAAAATGCTCTTCGTGTATGTCAAAAGTCATGTGTGATTTCCAAGCAAGCATGTTCTTATGTGAAGAGATCTGAACATACGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCATCGAGCACACAAGTTTCTACAAAGGAAAATGGAATTGGTGAAGCAATTGACGAGCTTGATGAAGAAGATTATAAAATTCTGATTCAGTCATGCGATTCTCCAACCAAAAGAGCGGAATCCTTCCCCACCTGCCCGTCAAACTTGGAGACAATTTTCTCTCCTTCTTTTGACCCTATTGAAGTACGTAGCGAAGCAAATATTGAACCAAATGCAGAGAATGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGACAATCAAAGTTGTGATGTTTCAGATTTCTACATATCTGATATGATCATTTCGAGCTTACCCTTCAGTGGGGATGCATTTTCTGATGATATTTGTGAAATGAATTGCTTTCCGGACTACAAATGTGCTGAATCAAACATCTTGTTTGATGTTTCCGAGCAATACATGGTATTGCCTTTCCTAGAAGACACTGTCCGAAATAGTAATACTAATACTCTTGATGATAAATTATGTCAAGAAGCTGTTATGGATACAGATCGGGCTGGCTTGTATTTAGAAATGGGTCAAATGAGACCCTGCCACCAGGGTACTGTTGTTAACTCTTCTGACTCAGATCAGGCAGAGTGCTTCGATCCACAGTTATTTATAAAAAACTTACCAGAATTATCAGATGTGGTATTGAACTTTCAACCCAATATATTGCCTGAGGAAGCTTCAAAAAGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGCGATGACGCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACAGAGGCCATACCTCCAAACATTCTTGGAGCGAGTTGCAGAAATGTTTGATGTTGTTATTTTCACTGCCAGCCAAAGCATATATGCCGAGCAACTTCTTGATATATTGGATCCATATCGAAAGTTCATATCTCGCCGAGTTTATCGTGAATCATGCATTTTCGCAGATGGCAGTTACACTAAAGATCTGACAGTCTTGGGGGTTGATCTTGCAAAAGTTGCCATTATTGATAATACTCCACAGGTTTTCCGCTTGCAAGTCAATAATGGAATTCCCATAAAGAGTTGGTTTGATGATCCGTCCGACAGTGCATTGATTTCATTACTTCCTTTCTTAGAGACCCTGGTTAATGCTGATGATCTGACAACACCATGGAAGGGTTTGTCTAATTTTTATTCCAAGAGTGCCTACTTCTGGCTAAGAACAAGAAACAGGAAGACCAGAAAGAGAAAGACAACTTTGCACAATGTCCACATGTCTGGGATCATACTTGCAAAAGATTTCTCGCCCCTTGTTTCTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

585

Amino Acids

65.34

Weight (kDa)

4.65

Isoelectric Point (pI)

47.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	372 - 531	6.2e-56	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT5G46410 AT5G46410 AT5G46410
fragaria_vesca	FvH4_3g06370
malus_domestica	MD05G1291500.v1.1 MD10G1267500.v1.1
prunus_persica	Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1
pyrus_communis	pycom05g26800 pycom10g22350
rosa_chinensis	RchiOBHm_Chr5g0012931
rosa_laevigata	RLG00000031970
rosa_multiflora	Rmu_sc0006885.1_g000005
rosa_roxburghii	Rroxscaffold_1G00063650
rosa_rugosa	Rorug05G0005400
rosa_samantha	Rh5AG099600 Rh5BG096300 Rh5CG108500 Rh5DG094900
rosa_wichuraiana	Rw5G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	465, 1028
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	772
AciI	CCGC	3 cut(s)	386, 506, 1480
AclWI	GGATC	5 cut(s)	1007, 1334, 1347, 1520, 1721
AcsI	RAATTY	3 cut(s)	10, 468, 1500
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	4 cut(s)	217, 576, 970, 1122
AfiI	CCNNNNNNNGG	4 cut(s)	728, 729, 1607, 1644
AflIII	ACRYGT	2 cut(s)	159, 1704
AgsI	TTSAA	7 cut(s)	367, 572, 596, 1063, 1070, 1098, 1201
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	963, 1572
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	6 cut(s)	47, 448, 629, 717, 902, 1094
AluI	AGCT	6 cut(s)	47, 448, 629, 717, 902, 1094
Alw21I	GWGCWC	2 cut(s)	401, 1215
Alw26I	GTCTC	3 cut(s)	533, 946, 1562
AlwI	GGATC	5 cut(s)	1007, 1334, 1347, 1520, 1721
Aor13HI	TCCGGA	1 cut(s)	772
AoxI	GGCC	1 cut(s)	1235
ApoI	RAATTY	3 cut(s)	10, 468, 1500
ArsI	GACNNNNNNTTYG	2 cut(s)	1091, 1123
AsuHPI	GGTGA	2 cut(s)	443, 644
AxyI	CCTNAGG	1 cut(s)	1086
BaeI	ACNNNNGTAYC	2 cut(s)	960, 993
BamHI	GGATCC	1 cut(s)	1339
BanI	GGYRCC	1 cut(s)	77
BbsI	GAAGAC	2 cut(s)	852, 1673
Bbv12I	GWGCWC	2 cut(s)	401, 1215
BccI	CCATC	2 cut(s)	238, 1391
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	2 cut(s)	965, 1574
BciVI	GTATCC	1 cut(s)	904
BclI	TGATCA	1 cut(s)	705
BcoDI	GTCTC	3 cut(s)	533, 946, 1562
BfaI	CTAG	2 cut(s)	137, 842
BfuAI	ACCTGC	1 cut(s)	530
BfuI	GTATCC	1 cut(s)	904
BglII	AGATCT	2 cut(s)	344, 1414
Bme1390I	CCNGG	2 cut(s)	965, 1574
BmgBI	CACGTC	1 cut(s)	112
BmiI	GGNNCC	2 cut(s)	79, 1341
BmrFI	CCNGG	2 cut(s)	965, 1574
BmsI	GCATC	4 cut(s)	99, 178, 604, 724
BpiI	GAAGAC	2 cut(s)	852, 1673
BpmI	CTGGAG	1 cut(s)	57
BsaAI	YACGTR	1 cut(s)	578
BsaBI	GATNNNNATC	2 cut(s)	915, 1344
BsaI	GGTCTC	2 cut(s)	946, 1562
BsaJI	CCNNGG	3 cut(s)	964, 1572, 1601
BsaWI	WCCGGW	1 cut(s)	772
Bsc4I	CCNNNNNNNGG	4 cut(s)	728, 729, 1607, 1644
Bse1I	ACTGG	2 cut(s)	40, 1146
Bse21I	CCTNAGG	1 cut(s)	1086
Bse3DI	GCAATG	1 cut(s)	1162
Bse8I	GATNNNNATC	2 cut(s)	915, 1344
BseAI	TCCGGA	1 cut(s)	772
BseBI	CCWGG	2 cut(s)	965, 1574
BseDI	CCNNGG	3 cut(s)	964, 1572, 1601
BseGI	GGATG	3 cut(s)	269, 739, 1138
BseJI	GATNNNNATC	2 cut(s)	915, 1344
BseLI	CCNNNNNNNGG	4 cut(s)	728, 729, 1607, 1644
BseMI	GCAATG	1 cut(s)	1162
BseMII	CTCAG	2 cut(s)	1005, 1077
BseNI	ACTGG	2 cut(s)	40, 1146
BshFI	GGCC	1 cut(s)	1237
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	401, 1215
BsiSI	CCGG	1 cut(s)	773
BslI	CCNNNNNNNGG	4 cut(s)	728, 729, 1607, 1644
BsmAI	GTCTC	3 cut(s)	533, 946, 1562
BsnI	GGCC	1 cut(s)	1237
Bso31I	GGTCTC	2 cut(s)	946, 1562
Bsp1286I	GDGCHC	2 cut(s)	401, 1215
Bsp13I	TCCGGA	1 cut(s)	772
Bsp19I	CCATGG	1 cut(s)	1601
BspACI	CCGC	3 cut(s)	386, 506, 1480
BspANI	GGCC	1 cut(s)	1237
BspCNI	CTCAG	2 cut(s)	1004, 1078
BspEI	TCCGGA	1 cut(s)	772
BspLI	GGNNCC	2 cut(s)	79, 1341
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	5 cut(s)	1007, 1334, 1347, 1520, 1721
BspQI	GCTCTTC	1 cut(s)	291
BspT107I	GGYRCC	1 cut(s)	77
BspTNI	GGTCTC	2 cut(s)	946, 1562
BsrBI	CCGCTC	1 cut(s)	506
BsrDI	GCAATG	1 cut(s)	1162
BsrI	ACTGG	2 cut(s)	40, 1146
BssECI	CCNNGG	3 cut(s)	964, 1572, 1601
BssT1I	CCWWGG	1 cut(s)	1601
Bst2UI	CCWGG	2 cut(s)	965, 1574
Bst4CI	ACNGT	8 cut(s)	28, 638, 853, 973, 1020, 1192, 1423, 1538
Bst6I	CTCTTC	3 cut(s)	291, 335, 988
BstAPI	GCANNNNNTGC	1 cut(s)	1448
BstBAI	YACGTR	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	324, 925, 1300, 1484
BstDEI	CTNAG	4 cut(s)	991, 1086, 1564, 1649
BstDSI	CCRYGG	1 cut(s)	1601
BstF5I	GGATG	3 cut(s)	269, 739, 1138
BstMAI	GTCTC	3 cut(s)	533, 946, 1562
BstMWI	GCNNNNNNNGC	1 cut(s)	1448
BstNI	CCWGG	2 cut(s)	965, 1574
BstNSI	RCATGY	2 cut(s)	330, 1708
BstSCI	CCNGG	2 cut(s)	963, 1572
BstSNI	TACGTA	1 cut(s)	578
BstV2I	GAAGAC	2 cut(s)	852, 1673
BstX2I	RGATCY	3 cut(s)	344, 1339, 1414
BstXI	CCANNNNNNTGG	1 cut(s)	1709
BstYI	RGATCY	3 cut(s)	344, 1339, 1414
Bsu36I	CCTNAGG	1 cut(s)	1086
BsuI	GTATCC	1 cut(s)	904
BsuRI	GGCC	1 cut(s)	1237
BtgI	CCRYGG	1 cut(s)	1601
BtgZI	GCGATG	1 cut(s)	1182
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	269, 739, 1138
BtsI	GCAGTG	1 cut(s)	1293
BtsIMutI	CAGTG	6 cut(s)	643, 733, 849, 1139, 1293, 1543
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	4 cut(s)	324, 925, 1300, 1484
CseI	GACGC	1 cut(s)	1181
Csp6I	GTAC	4 cut(s)	216, 575, 969, 1121
CviQI	GTAC	4 cut(s)	216, 575, 969, 1121
DdeI	CTNAG	4 cut(s)	991, 1086, 1564, 1649
DraI	TTTAAA	2 cut(s)	237, 270
Eam1104I	CTCTTC	3 cut(s)	291, 335, 988
EarI	CTCTTC	3 cut(s)	291, 335, 988
Eco105I	TACGTA	1 cut(s)	578
Eco130I	CCWWGG	1 cut(s)	1601
Eco31I	GGTCTC	2 cut(s)	946, 1562
Eco57I	CTGAAG	1 cut(s)	709
Eco81I	CCTNAGG	1 cut(s)	1086
EcoRI	GAATTC	1 cut(s)	1500
EcoRII	CCWGG	2 cut(s)	963, 1572
EcoT14I	CCWWGG	1 cut(s)	1601
EcoT22I	ATGCAT	2 cut(s)	739, 1388
ErhI	CCWWGG	1 cut(s)	1601
FbaI	TGATCA	1 cut(s)	705
FokI	GGATG	3 cut(s)	276, 746, 1145
FspBI	CTAG	2 cut(s)	137, 842
GsuI	CTGGAG	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	1237
HapII	CCGG	1 cut(s)	773
HgaI	GACGC	1 cut(s)	1181
HincII	GTYRAC	1 cut(s)	979
HindII	GTYRAC	1 cut(s)	979
HindIII	AAGCTT	1 cut(s)	1092
HinfI	GANTC	6 cut(s)	475, 488, 509, 791, 989, 1379
HpaI	GTTAAC	1 cut(s)	979
HpaII	CCGG	1 cut(s)	773
HphI	GGTGA	2 cut(s)	443, 644
Hpy166II	GTNNAC	3 cut(s)	33, 979, 1702
Hpy188III	TCNNGA	6 cut(s)	193, 773, 878, 896, 1328, 1376
Hpy8I	GTNNAC	3 cut(s)	33, 979, 1702
HpyAV	CCTTC	5 cut(s)	238, 523, 564, 733, 1600
HpyCH4III	ACNGT	8 cut(s)	28, 638, 853, 973, 1020, 1192, 1423, 1538
HpyCH4IV	ACGT	3 cut(s)	111, 161, 577
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1448
HpyF3I	CTNAG	4 cut(s)	991, 1086, 1564, 1649
HpySE526I	ACGT	3 cut(s)	111, 161, 577
Kpn2I	TCCGGA	1 cut(s)	772
Ksp22I	TGATCA	1 cut(s)	705
KspAI	GTTAAC	1 cut(s)	979
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	3 cut(s)	44, 626, 1258
LweI	GCATC	4 cut(s)	99, 178, 604, 724
MaeI	CTAG	2 cut(s)	137, 842
MaeII	ACGT	3 cut(s)	111, 161, 577
MaeIII	GTNAC	4 cut(s)	632, 659, 1111, 1403
MbiI	CCGCTC	1 cut(s)	506
MboII	GAAGA	7 cut(s)	278, 352, 467, 470, 857, 975, 1678
MfeI	CAATTG	1 cut(s)	438
MflI	RGATCY	3 cut(s)	344, 1339, 1414
MhlI	GDGCHC	2 cut(s)	401, 1215
MlyI	GAGTC	1 cut(s)	983
MmeI	TCCRAC	3 cut(s)	22, 518, 1557
MnlI	CCTC	4 cut(s)	80, 1081, 1227, 1253
Mph1103I	ATGCAT	2 cut(s)	739, 1388
MroI	TCCGGA	1 cut(s)	772
MseI	TTAA	5 cut(s)	23, 236, 269, 978, 1578
MslI	CAYNNNNRTG	1 cut(s)	1167
MspI	CCGG	1 cut(s)	773
MspR9I	CCNGG	2 cut(s)	965, 1574
MunI	CAATTG	1 cut(s)	438
MvaI	CCWGG	2 cut(s)	965, 1574
MwoI	GCNNNNNNNGC	1 cut(s)	1448
NcoI	CCATGG	1 cut(s)	1601
NlaIV	GGNNCC	2 cut(s)	79, 1341
NmeAIII	GCCGAG	2 cut(s)	1342, 1391
NmuCI	GTSAC	2 cut(s)	632, 659
NsiI	ATGCAT	2 cut(s)	739, 1388
NspI	RCATGY	2 cut(s)	330, 1708
PaqCI	CACCTGC	1 cut(s)	530
PciI	ACATGT	1 cut(s)	1704
PciSI	GCTCTTC	1 cut(s)	291
PfeI	GAWTC	5 cut(s)	475, 488, 509, 791, 1379
PflFI	GACNNNGTC	1 cut(s)	851
PleI	GAGTC	1 cut(s)	983
PpsI	GAGTC	1 cut(s)	983
Ppu21I	YACGTR	1 cut(s)	578
PscI	ACATGT	1 cut(s)	1704
PsiI	TTATAA	2 cut(s)	465, 1028
Psp6I	CCWGG	2 cut(s)	963, 1572
PspGI	CCWGG	2 cut(s)	963, 1572
PspN4I	GGNNCC	2 cut(s)	79, 1341
PsuI	RGATCY	3 cut(s)	344, 1339, 1414
PsyI	GACNNNGTC	1 cut(s)	851
RsaI	GTAC	4 cut(s)	217, 576, 970, 1122
RsaNI	GTAC	4 cut(s)	216, 575, 969, 1121
RseI	CAYNNNNRTG	1 cut(s)	1167
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	5 cut(s)	23, 236, 269, 978, 1578
SchI	GAGTC	1 cut(s)	983
ScrFI	CCNGG	2 cut(s)	965, 1574
SduI	GDGCHC	2 cut(s)	401, 1215
SfaNI	GCATC	4 cut(s)	99, 178, 604, 724
SmiMI	CAYNNNNRTG	1 cut(s)	1167
SnaBI	TACGTA	1 cut(s)	578
SsiI	CCGC	3 cut(s)	386, 506, 1480
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	2 cut(s)	137, 842
StyD4I	CCNGG	2 cut(s)	963, 1572
StyI	CCWWGG	1 cut(s)	1601
TaaI	ACNGT	8 cut(s)	28, 638, 853, 973, 1020, 1192, 1423, 1538
TaiI	ACGT	3 cut(s)	114, 164, 580
TaqI	TCGA	5 cut(s)	69, 395, 713, 1011, 1348
TatI	WGTACW	2 cut(s)	215, 1120
TfiI	GAWTC	5 cut(s)	475, 488, 509, 791, 1379
Tru1I	TTAA	5 cut(s)	23, 236, 269, 978, 1578
Tru9I	TTAA	5 cut(s)	23, 236, 269, 978, 1578
TscAI	CASTG	6 cut(s)	643, 733, 856, 1146, 1300, 1543
TseFI	GTSAC	2 cut(s)	632, 659
Tsp45I	GTSAC	2 cut(s)	632, 659
TspGWI	ACGGA	1 cut(s)	1518
TspRI	CASTG	6 cut(s)	643, 733, 856, 1146, 1300, 1543
Tth111I	GACNNNGTC	1 cut(s)	851
XapI	RAATTY	3 cut(s)	10, 468, 1500
XceI	RCATGY	2 cut(s)	330, 1708
XspI	CTAG	2 cut(s)	137, 842
Zsp2I	ATGCAT	2 cut(s)	739, 1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.