Rh5AG099600

CTD small phosphatase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0006277
Physical Location & Seq
Forward (+)
9207580 .. 9215100
7521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG099600.1

Sequence Viewer

Length: 1386 bp
ATGCCATCTTTAAAAATGAAGGCTCAATCAAGCACAGGATGTTTAAAAGAGAAAAATGCTCTTCGTGTATGTCAAAAGTCATGTGTTATTTCCAAGCAAGCATGTTCTTATGTGAAGAGATCTGAACATACGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCCTCGAGCACCGAAGTTTCTATGAAGGAAAATGGAAGTGGTGAAGCAATTGACGAGCTTGATGAAGAAGATTATAAAATTCTGATTCAGTCATGTGATTCTCCAACCAAAAGAGCGGAATCGTTCGCCACCTGCCCATCAAACTTGGAGACAATTTTCTCTCCTTCTTTTGACCCTATTGAAGTACGTAGCGAAGCAAATAGTGAACCAAATGCGGAGAATGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGACAATCAAAGTTGTGATGTTTCAGATTTCTACATATCTGATATGATCATTTCGAGTGGGGATGCATTTACTGATGATATTTGTGAAACGAATTGCTTTCCGGACTACAAATGTGCGGAATCAAACATCTTGTTTGATGTTTCCGAGCAATACATGGTATTGCCTTTCCTAGAAGACACTGTCCGAAATAGTAATACTAATACTCTGGATGATAAATTATGTCAAGAAGATACAGATCGGGCTGCCTTGTATTTAGAAATGGGTCAAATGAGACCCTGCCTCCAGGATACTGTTGTTAACTCTTCTGACTCAGATCAGGCAGAGTGCTTCGATCCACAGTTGTTTATAAAAAATTTACCAGAATTATCAGATGTGGTATCGAACTTTCAACCCAATATATTGCCTGAGGAAGCTTCAAAAAGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGCGATGACGCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACAGAGGCCATACCTCCAAACATTCTTGGAGCGAGTTGCAGAAATGTTTGATGTTGTTATTTTCACTGCCAGCCAAAGCATATATGCCGAGCAACTTCTTGATATATTGGATCCATATCGAAAGTTCATATCTCGCCGAGTTTATCGTGAATCTTGCATTTTCGCAGATGGCAGTTACACTAAAGATCTGACAGTCTTGGGGGTTGATCTTGCAAAAGTTGCCATTATTGATAATACTCCACAGGTTTTCCGCTTGCAAGTCAATAATGGAATTCCCATAAAGAGTTGGTTTGATGATCCATCTGACAGTGCATTGATTTCATTACTTCCTTTCTTAGAGACCCTGGTTAATGCTGATGATGTCCGCCCCATAATTGCCAAGAAATTCGGTAACAAGGAATAA

Protein Analysis

461

Amino Acids

51.62

Weight (kDa)

4.36

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 290 - 450 5e-57 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 240, 782
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 535
AciI CCGC 6 cut(s) 161, 281, 380, 551, 1234, 1348
AclWI GGATC 4 cut(s) 761, 1088, 1101, 1274
AcsI RAATTY 4 cut(s) 243, 787, 1254, 1367
AfaI GTAC 2 cut(s) 351, 876
AgsI TTSAA 5 cut(s) 142, 347, 824, 852, 955
AjnI CCWGG 2 cut(s) 717, 1326
AluBI AGCT 3 cut(s) 223, 404, 848
AluI AGCT 3 cut(s) 223, 404, 848
Alw21I GWGCWC 2 cut(s) 176, 969
Alw26I GTCTC 3 cut(s) 308, 700, 1316
AlwI GGATC 4 cut(s) 761, 1088, 1101, 1274
Ama87I CYCGRG 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 535
AoxI GGCC 1 cut(s) 989
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 4 cut(s) 243, 787, 1254, 1367
ArsI GACNNNNNNTTYG 2 cut(s) 845, 877
AsuHPI GGTGA 2 cut(s) 218, 419
AvaI CYCGRG 1 cut(s) 169
AxyI CCTNAGG 1 cut(s) 840
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BamHI GGATCC 1 cut(s) 1093
BbsI GAAGAC 1 cut(s) 615
Bbv12I GWGCWC 2 cut(s) 176, 969
BbvI GCAGC 1 cut(s) 664
BccI CCATC 4 cut(s) 13, 310, 1145, 1291
BciT130I CCWGG 2 cut(s) 719, 1328
BciVI GTATCC 1 cut(s) 715
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 308, 700, 1316
BfaI CTAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 305
BfuI GTATCC 1 cut(s) 715
BglII AGATCT 2 cut(s) 119, 1168
BisI GCNGC 1 cut(s) 678
BlsI GCNGC 1 cut(s) 679
Bme1390I CCNGG 2 cut(s) 719, 1328
BmeT110I CYCGRG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 1095
BmrFI CCNGG 2 cut(s) 719, 1328
BmsI GCATC 2 cut(s) 379, 487
BpiI GAAGAC 1 cut(s) 615
BpmI CTGGAG 1 cut(s) 701
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 669, 1098
BsaI GGTCTC 2 cut(s) 700, 1316
BsaJI CCNNGG 1 cut(s) 1326
BsaWI WCCGGW 1 cut(s) 535
BsaXI ACNNNNNCTCC 2 cut(s) 699, 729
Bse1I ACTGG 1 cut(s) 900
Bse21I CCTNAGG 1 cut(s) 840
Bse3DI GCAATG 1 cut(s) 916
Bse8I GATNNNNATC 2 cut(s) 669, 1098
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 2 cut(s) 719, 1328
BseDI CCNNGG 1 cut(s) 1326
BseGI GGATG 4 cut(s) 44, 502, 649, 892
BseJI GATNNNNATC 2 cut(s) 669, 1098
BseMI GCAATG 1 cut(s) 916
BseMII CTCAG 2 cut(s) 759, 831
BseNI ACTGG 1 cut(s) 900
BseXI GCAGC 1 cut(s) 664
BshFI GGCC 1 cut(s) 991
BsiHKAI GWGCWC 2 cut(s) 176, 969
BsiHKCI CYCGRG 1 cut(s) 169
BsiSI CCGG 1 cut(s) 536
BsmAI GTCTC 3 cut(s) 308, 700, 1316
BsnI GGCC 1 cut(s) 991
Bso31I GGTCTC 2 cut(s) 700, 1316
BsoBI CYCGRG 1 cut(s) 169
Bsp1286I GDGCHC 2 cut(s) 176, 969
Bsp13I TCCGGA 1 cut(s) 535
Bsp143I GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
BspACI CCGC 6 cut(s) 161, 281, 380, 551, 1234, 1348
BspANI GGCC 1 cut(s) 991
BspCNI CTCAG 2 cut(s) 758, 832
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 1095
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 761, 1088, 1101, 1274
BspQI GCTCTTC 1 cut(s) 66
BspTNI GGTCTC 2 cut(s) 700, 1316
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 916
BsrI ACTGG 1 cut(s) 900
BssECI CCNNGG 1 cut(s) 1326
BssMI GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
Bst2UI CCWGG 2 cut(s) 719, 1328
Bst4CI ACNGT 7 cut(s) 413, 616, 727, 774, 946, 1177, 1292
Bst6I CTCTTC 3 cut(s) 66, 110, 742
BstAPI GCANNNNNTGC 1 cut(s) 1202
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 3 cut(s) 99, 1054, 1238
BstDEI CTNAG 3 cut(s) 745, 840, 1318
BstF5I GGATG 4 cut(s) 44, 502, 649, 892
BstKTI GATC 9 cut(s) 122, 483, 673, 751, 769, 1096, 1171, 1192, 1282
BstMAI GTCTC 3 cut(s) 308, 700, 1316
BstMBI GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
BstMWI GCNNNNNNNGC 1 cut(s) 1202
BstNI CCWGG 2 cut(s) 719, 1328
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 717, 1326
BstSNI TACGTA 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 3 cut(s) 119, 1093, 1168
BstYI RGATCY 3 cut(s) 119, 1093, 1168
Bsu36I CCTNAGG 1 cut(s) 840
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 1 cut(s) 991
BtgZI GCGATG 1 cut(s) 936
BtsCI GGATG 4 cut(s) 44, 502, 649, 892
BtsI GCAGTG 1 cut(s) 1047
BtsIMutI CAGTG 5 cut(s) 418, 612, 893, 1047, 1297
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 99, 1054, 1238
CseI GACGC 1 cut(s) 935
Csp6I GTAC 2 cut(s) 350, 875
CviAII CATG 7 cut(s) 81, 102, 258, 432, 589, 958, 970
CviJI RGCY 7 cut(s) 23, 223, 404, 677, 848, 991, 1056
CviKI_1 RGCY 7 cut(s) 23, 223, 404, 677, 848, 991, 1056
CviQI GTAC 2 cut(s) 350, 875
DdeI CTNAG 3 cut(s) 745, 840, 1318
DpnI GATC 9 cut(s) 121, 482, 672, 750, 768, 1095, 1170, 1191, 1281
DpnII GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
DraI TTTAAA 2 cut(s) 12, 45
Eam1104I CTCTTC 3 cut(s) 66, 110, 742
EarI CTCTTC 3 cut(s) 66, 110, 742
EciI GGCGGA 1 cut(s) 1337
Eco105I TACGTA 1 cut(s) 353
Eco31I GGTCTC 2 cut(s) 700, 1316
Eco81I CCTNAGG 1 cut(s) 840
Eco88I CYCGRG 1 cut(s) 169
EcoRI GAATTC 1 cut(s) 1254
EcoRII CCWGG 2 cut(s) 717, 1326
EcoT22I ATGCAT 1 cut(s) 502
FaeI CATG 7 cut(s) 84, 105, 261, 435, 592, 961, 973
FatI CATG 7 cut(s) 80, 101, 257, 431, 588, 957, 969
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 678
FokI GGATG 4 cut(s) 51, 509, 656, 899
Fsp4HI GCNGC 1 cut(s) 678
FspBI CTAG 1 cut(s) 605
GluI GCNGC 1 cut(s) 678
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 1 cut(s) 991
HapII CCGG 1 cut(s) 536
HgaI GACGC 1 cut(s) 935
Hin1II CATG 7 cut(s) 84, 105, 261, 435, 592, 961, 973
HincII GTYRAC 1 cut(s) 733
HindII GTYRAC 1 cut(s) 733
HindIII AAGCTT 1 cut(s) 846
HinfI GANTC 6 cut(s) 250, 263, 284, 554, 743, 1133
HpaI GTTAAC 1 cut(s) 733
HpaII CCGG 1 cut(s) 536
HphI GGTGA 2 cut(s) 218, 419
Hpy166II GTNNAC 2 cut(s) 371, 733
Hpy188III TCNNGA 5 cut(s) 536, 641, 659, 1082, 1130
Hpy8I GTNNAC 2 cut(s) 371, 733
HpyAV CCTTC 3 cut(s) 13, 184, 339
HpyCH4III ACNGT 7 cut(s) 413, 616, 727, 774, 946, 1177, 1292
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 7 cut(s) 392, 500, 1022, 1140, 1196, 1240, 1295
HpyF10VI GCNNNNNNNGC 1 cut(s) 1202
HpyF3I CTNAG 3 cut(s) 745, 840, 1318
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 7 cut(s) 84, 105, 261, 435, 592, 961, 973
Kpn2I TCCGGA 1 cut(s) 535
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 733
Kzo9I GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 401, 1012
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 2 cut(s) 379, 487
MaeI CTAG 1 cut(s) 605
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 5 cut(s) 407, 434, 865, 1157, 1373
MalI GATC 9 cut(s) 121, 482, 672, 750, 768, 1095, 1170, 1191, 1281
MbiI CCGCTC 1 cut(s) 281
MboI GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
MboII GAAGA 7 cut(s) 53, 127, 242, 245, 620, 674, 729
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 3 cut(s) 119, 1093, 1168
MhlI GDGCHC 2 cut(s) 176, 969
MlyI GAGTC 1 cut(s) 737
MmeI TCCRAC 1 cut(s) 293
MnlI CCTC 5 cut(s) 178, 725, 835, 981, 1007
Mph1103I ATGCAT 1 cut(s) 502
MroI TCCGGA 1 cut(s) 535
MseI TTAA 4 cut(s) 11, 44, 732, 1332
MslI CAYNNNNRTG 1 cut(s) 921
MspI CCGG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 719, 1328
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 2 cut(s) 719, 1328
MwoI GCNNNNNNNGC 1 cut(s) 1202
NdeII GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
NlaIII CATG 7 cut(s) 84, 105, 261, 435, 592, 961, 973
NlaIV GGNNCC 1 cut(s) 1095
NmeAIII GCCGAG 2 cut(s) 1096, 1145
NmuCI GTSAC 2 cut(s) 407, 434
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 105
PaeR7I CTCGAG 1 cut(s) 169
PaqCI CACCTGC 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 66
PfeI GAWTC 5 cut(s) 250, 263, 284, 554, 1133
PflFI GACNNNGTC 1 cut(s) 614
PfoI TCCNGGA 1 cut(s) 717
PkrI GCNGC 1 cut(s) 679
PleI GAGTC 1 cut(s) 737
PpsI GAGTC 1 cut(s) 737
Ppu21I YACGTR 1 cut(s) 353
PsiI TTATAA 2 cut(s) 240, 782
Psp6I CCWGG 2 cut(s) 717, 1326
PspGI CCWGG 2 cut(s) 717, 1326
PspN4I GGNNCC 1 cut(s) 1095
PspXI VCTCGAGB 1 cut(s) 169
PsuI RGATCY 3 cut(s) 119, 1093, 1168
PsyI GACNNNGTC 1 cut(s) 614
RsaI GTAC 2 cut(s) 351, 876
RsaNI GTAC 2 cut(s) 350, 875
RseI CAYNNNNRTG 1 cut(s) 921
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 11, 44, 732, 1332
SatI GCNGC 1 cut(s) 678
Sau3AI GATC 9 cut(s) 119, 480, 670, 748, 766, 1093, 1168, 1189, 1279
SchI GAGTC 1 cut(s) 737
ScrFI CCNGG 2 cut(s) 719, 1328
SduI GDGCHC 2 cut(s) 176, 969
SetI ASST 7 cut(s) 225, 299, 355, 406, 850, 999, 1230
SfaNI GCATC 2 cut(s) 379, 487
Sfr274I CTCGAG 1 cut(s) 169
SlaI CTCGAG 1 cut(s) 169
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 169
SmoI CTYRAG 1 cut(s) 169
SnaBI TACGTA 1 cut(s) 353
SsiI CCGC 6 cut(s) 161, 281, 380, 551, 1234, 1348
SspMI CTAG 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 717, 1326
TaaI ACNGT 7 cut(s) 413, 616, 727, 774, 946, 1177, 1292
TaiI ACGT 1 cut(s) 355
TaqI TCGA 5 cut(s) 170, 488, 765, 815, 1102
TatI WGTACW 1 cut(s) 874
TfiI GAWTC 5 cut(s) 250, 263, 284, 554, 1133
Tru1I TTAA 4 cut(s) 11, 44, 732, 1332
Tru9I TTAA 4 cut(s) 11, 44, 732, 1332
TscAI CASTG 5 cut(s) 418, 619, 900, 1054, 1297
TseFI GTSAC 2 cut(s) 407, 434
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 407, 434
TspDTI ATGAA 9 cut(s) 32, 203, 243, 420, 890, 903, 974, 1099, 1293
TspRI CASTG 5 cut(s) 418, 619, 900, 1054, 1297
Tth111I GACNNNGTC 1 cut(s) 614
XapI RAATTY 4 cut(s) 243, 787, 1254, 1367
XceI RCATGY 1 cut(s) 105
XhoI CTCGAG 1 cut(s) 169
XspI CTAG 1 cut(s) 605
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.