Rroxscaffold_1G00063650

CTD small phosphatase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0006277
Physical Location & Seq
Reverse (-)
85447353 .. 85454745
7393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063650.1

Sequence Viewer

Length: 1407 bp
ATGCCATCTTTAAAAATGAAGGCTCAATCAAGCACTGGATGTTTAAAAGAGAAAAATCCTCTTCGTGTATGTCAAAAGTCATGTGTGATTTCCAAGCAAGCATGTTCTTATGTGAAGAGATCTGAACATTTGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCTTCGAGCACCCAAGTTTCTATGAAGGAAAATGGAAGTGGTGAAGCAATTGACGAGCTTGATGAAGAAGATTATAAAATTCTGATTCAGTCATGTGATTCTCCAACCAAAAGAGCGGAATCCTTCCCCACCTGCCCGTCAAACTTGGAGACAATTTTCTCTCCTTCTTTTGACCCTATTGAAGTACGTAGCGAAGCAAATAGTGAACCAAATGCAGAGAATGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGACAATCAAAGTTGTGATGTTTCAGATTTCTACATATCTGATATGATCATTTCGAGCTTACCCTTCAGTGGGGACGCATTTACTGATGATGTATGTGAAACGAATTGCTTTCCGGACTACAAATGTGCTGAATCAAACATCTTGTTTGATGTTTCCGAGCAATACATGGTATTGCCTTTCCTAGAAGACAATGTCCGAAATAGTAATACTAATACTCTTGATGATAAATTATGTCAAGAAGCTGCTATGGATACAGATCGGGCTGGCTTGTATTTAGAAATGGGTCAAATGAGACCCTGCCACCAGGATACTGTTGTTAACTCTTCTGACTCAGATCAGGCAGAGTGCTTTGATCCACAGTTGTTTATAAAAAACTTACCAGAATTATCAGATGTGGTATCGAACTTTCAACCCAATATATTGCCTGAGGAAACTTCAAAAAGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGCGATGACGCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACAGAGGCCATACCTCCAAACATTCTTGGAGCGAGTTGCAGAAATGTTTGATGTTGTTATTTTCACTGCCAGCCAAAGCATATATGCCGAGCAACTTCTTGATATATTGGATCCATATCGAAAGTTCATATCTCGCCGAGTTTATCGTGAATCATGCATTTTCACAGATGGCAGTTACACTAAAGATCTGACAGTCTTGGGGGTTGATCTTGCAAAAGTTGCCATTATTGATAATACTCCACAGGTGTTCCGCTTGCAAGTCAATAATGGAATTCCCATAAAGAGTTGGTTTGATGATCCGTCCGACAGTGCATTGATTTCATTACTTCCTTTCTTAGAGACCCTGGTTAATGCTGATGATGTCCGCCCCATAATTGCCAAGAAATTCGGTAACAAGGAATAA

Protein Analysis

468

Amino Acids

52.47

Weight (kDa)

4.39

Isoelectric Point (pI)

54.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 297 - 457 4e-57 NLI interacting factor-like phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 240, 803
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AccBSI CCGCTC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 4 cut(s) 161, 281, 1255, 1369
AclWI GGATC 4 cut(s) 782, 1109, 1122, 1295
AcsI RAATTY 3 cut(s) 243, 1275, 1388
AcuI CTGAAG 1 cut(s) 484
AfaI GTAC 2 cut(s) 351, 897
AfiI CCNNNNNNNGG 2 cut(s) 503, 504
AgsI TTSAA 5 cut(s) 142, 347, 845, 873, 976
AjnI CCWGG 2 cut(s) 738, 1347
AluBI AGCT 4 cut(s) 223, 404, 492, 677
AluI AGCT 4 cut(s) 223, 404, 492, 677
Alw21I GWGCWC 2 cut(s) 176, 990
Alw26I GTCTC 3 cut(s) 308, 721, 1337
AlwI GGATC 4 cut(s) 782, 1109, 1122, 1295
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 1 cut(s) 1010
ApeKI GCWGC 1 cut(s) 677
ApoI RAATTY 3 cut(s) 243, 1275, 1388
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AsuHPI GGTGA 2 cut(s) 218, 419
AxyI CCTNAGG 1 cut(s) 861
BaeI ACNNNNGTAYC 2 cut(s) 735, 768
BamHI GGATCC 1 cut(s) 1114
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 176, 990
BbvI GCAGC 1 cut(s) 664
BccI CCATC 2 cut(s) 13, 1166
BciT130I CCWGG 2 cut(s) 740, 1349
BciVI GTATCC 2 cut(s) 679, 736
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 3 cut(s) 308, 721, 1337
BfaI CTAG 1 cut(s) 617
BfuAI ACCTGC 1 cut(s) 305
BfuI GTATCC 2 cut(s) 679, 736
BglII AGATCT 2 cut(s) 119, 1189
BisI GCNGC 1 cut(s) 678
BlsI GCNGC 1 cut(s) 679
Bme1390I CCNGG 2 cut(s) 740, 1349
BmiI GGNNCC 1 cut(s) 1116
BmrFI CCNGG 2 cut(s) 740, 1349
BmsI GCATC 1 cut(s) 379
BpiI GAAGAC 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 353
BsaBI GATNNNNATC 2 cut(s) 690, 1119
BsaI GGTCTC 2 cut(s) 721, 1337
BsaJI CCNNGG 1 cut(s) 1347
BsaWI WCCGGW 1 cut(s) 547
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 504
Bse1I ACTGG 2 cut(s) 40, 921
Bse21I CCTNAGG 1 cut(s) 861
Bse3DI GCAATG 1 cut(s) 937
Bse8I GATNNNNATC 2 cut(s) 690, 1119
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 2 cut(s) 740, 1349
BseDI CCNNGG 1 cut(s) 1347
BseGI GGATG 2 cut(s) 44, 913
BseJI GATNNNNATC 2 cut(s) 690, 1119
BseLI CCNNNNNNNGG 2 cut(s) 503, 504
BseMI GCAATG 1 cut(s) 937
BseMII CTCAG 2 cut(s) 780, 852
BseNI ACTGG 2 cut(s) 40, 921
BseXI GCAGC 1 cut(s) 664
BshFI GGCC 1 cut(s) 1012
BsiHKAI GWGCWC 2 cut(s) 176, 990
BsiSI CCGG 1 cut(s) 548
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 2 cut(s) 503, 504
BsmAI GTCTC 3 cut(s) 308, 721, 1337
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 1 cut(s) 1012
Bso31I GGTCTC 2 cut(s) 721, 1337
Bsp1286I GDGCHC 2 cut(s) 176, 990
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
BspACI CCGC 4 cut(s) 161, 281, 1255, 1369
BspANI GGCC 1 cut(s) 1012
BspCNI CTCAG 2 cut(s) 779, 853
BspEI TCCGGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 1116
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 4 cut(s) 782, 1109, 1122, 1295
BspTNI GGTCTC 2 cut(s) 721, 1337
BsrBI CCGCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 937
BsrI ACTGG 2 cut(s) 40, 921
BssECI CCNNGG 1 cut(s) 1347
BssMI GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
Bst2UI CCWGG 2 cut(s) 740, 1349
Bst4CI ACNGT 6 cut(s) 413, 748, 795, 967, 1198, 1313
Bst6I CTCTTC 3 cut(s) 66, 110, 763
BstAPI GCANNNNNTGC 1 cut(s) 1223
BstBAI YACGTR 1 cut(s) 353
BstC8I GCNNGC 4 cut(s) 99, 700, 1075, 1259
BstDEI CTNAG 3 cut(s) 766, 861, 1339
BstF5I GGATG 2 cut(s) 44, 913
BstKTI GATC 9 cut(s) 122, 483, 694, 772, 790, 1117, 1192, 1213, 1303
BstMAI GTCTC 3 cut(s) 308, 721, 1337
BstMBI GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
BstMWI GCNNNNNNNGC 1 cut(s) 1223
BstNI CCWGG 2 cut(s) 740, 1349
BstNSI RCATGY 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 738, 1347
BstSNI TACGTA 1 cut(s) 353
BstV1I GCAGC 1 cut(s) 664
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 3 cut(s) 119, 1114, 1189
BstYI RGATCY 3 cut(s) 119, 1114, 1189
Bsu36I CCTNAGG 1 cut(s) 861
BsuI GTATCC 2 cut(s) 679, 736
BsuRI GGCC 1 cut(s) 1012
BtgZI GCGATG 1 cut(s) 957
BtsCI GGATG 2 cut(s) 44, 913
BtsI GCAGTG 1 cut(s) 1068
BtsIMutI CAGTG 6 cut(s) 33, 418, 508, 914, 1068, 1318
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 4 cut(s) 99, 700, 1075, 1259
CseI GACGC 2 cut(s) 518, 956
Csp6I GTAC 2 cut(s) 350, 896
CviAII CATG 8 cut(s) 81, 102, 258, 432, 601, 979, 991, 1158
CviJI RGCY 9 cut(s) 23, 223, 404, 492, 677, 698, 702, 1012, 1077
CviKI_1 RGCY 9 cut(s) 23, 223, 404, 492, 677, 698, 702, 1012, 1077
CviQI GTAC 2 cut(s) 350, 896
DdeI CTNAG 3 cut(s) 766, 861, 1339
DpnI GATC 9 cut(s) 121, 482, 693, 771, 789, 1116, 1191, 1212, 1302
DpnII GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
DraI TTTAAA 2 cut(s) 12, 45
Eam1104I CTCTTC 3 cut(s) 66, 110, 763
EarI CTCTTC 3 cut(s) 66, 110, 763
EciI GGCGGA 1 cut(s) 1358
Eco105I TACGTA 1 cut(s) 353
Eco31I GGTCTC 2 cut(s) 721, 1337
Eco57I CTGAAG 1 cut(s) 484
Eco81I CCTNAGG 1 cut(s) 861
EcoRI GAATTC 1 cut(s) 1275
EcoRII CCWGG 2 cut(s) 738, 1347
EcoT22I ATGCAT 1 cut(s) 1163
FaeI CATG 8 cut(s) 84, 105, 261, 435, 604, 982, 994, 1161
FaqI GGGAC 1 cut(s) 521
FatI CATG 8 cut(s) 80, 101, 257, 431, 600, 978, 990, 1157
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 1 cut(s) 678
FokI GGATG 2 cut(s) 51, 920
Fsp4HI GCNGC 1 cut(s) 678
FspBI CTAG 1 cut(s) 617
GluI GCNGC 1 cut(s) 678
HaeIII GGCC 1 cut(s) 1012
HapII CCGG 1 cut(s) 548
HgaI GACGC 2 cut(s) 518, 956
Hin1II CATG 8 cut(s) 84, 105, 261, 435, 604, 982, 994, 1161
HincII GTYRAC 1 cut(s) 754
HindII GTYRAC 1 cut(s) 754
HinfI GANTC 6 cut(s) 250, 263, 284, 566, 764, 1154
HpaI GTTAAC 1 cut(s) 754
HpaII CCGG 1 cut(s) 548
HphI GGTGA 2 cut(s) 218, 419
Hpy166II GTNNAC 2 cut(s) 371, 754
Hpy188III TCNNGA 5 cut(s) 548, 653, 671, 1103, 1151
Hpy8I GTNNAC 2 cut(s) 371, 754
HpyAV CCTTC 5 cut(s) 13, 184, 298, 339, 508
HpyCH4III ACNGT 6 cut(s) 413, 748, 795, 967, 1198, 1313
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 7 cut(s) 380, 392, 1043, 1161, 1217, 1261, 1316
HpyF10VI GCNNNNNNNGC 1 cut(s) 1223
HpyF3I CTNAG 3 cut(s) 766, 861, 1339
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 8 cut(s) 84, 105, 261, 435, 604, 982, 994, 1161
Kpn2I TCCGGA 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 480
KspAI GTTAAC 1 cut(s) 754
Kzo9I GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
LmnI GCTCC 2 cut(s) 401, 1033
Lsp1109I GCAGC 1 cut(s) 664
LweI GCATC 1 cut(s) 379
MaeI CTAG 1 cut(s) 617
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 5 cut(s) 407, 434, 886, 1178, 1394
MalI GATC 9 cut(s) 121, 482, 693, 771, 789, 1116, 1191, 1212, 1302
MbiI CCGCTC 1 cut(s) 281
MboI GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
MboII GAAGA 7 cut(s) 53, 127, 159, 242, 245, 632, 750
MfeI CAATTG 1 cut(s) 213
MflI RGATCY 3 cut(s) 119, 1114, 1189
MhlI GDGCHC 2 cut(s) 176, 990
MluCI AATT 9 cut(s) 213, 243, 318, 538, 662, 818, 1275, 1377, 1388
MlyI GAGTC 1 cut(s) 758
MmeI TCCRAC 2 cut(s) 293, 1332
MnlI CCTC 4 cut(s) 69, 856, 1002, 1028
Mph1103I ATGCAT 1 cut(s) 1163
MroI TCCGGA 1 cut(s) 547
MseI TTAA 4 cut(s) 11, 44, 753, 1353
MslI CAYNNNNRTG 1 cut(s) 942
MspI CCGG 1 cut(s) 548
MspR9I CCNGG 2 cut(s) 740, 1349
MunI CAATTG 1 cut(s) 213
MvaI CCWGG 2 cut(s) 740, 1349
MwoI GCNNNNNNNGC 1 cut(s) 1223
NdeII GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
NlaIII CATG 8 cut(s) 84, 105, 261, 435, 604, 982, 994, 1161
NlaIV GGNNCC 1 cut(s) 1116
NmeAIII GCCGAG 2 cut(s) 1117, 1166
NmuCI GTSAC 2 cut(s) 407, 434
NsiI ATGCAT 1 cut(s) 1163
NspI RCATGY 1 cut(s) 105
PaqCI CACCTGC 1 cut(s) 305
PfeI GAWTC 5 cut(s) 250, 263, 284, 566, 1154
PflFI GACNNNGTC 1 cut(s) 626
PkrI GCNGC 1 cut(s) 679
PleI GAGTC 1 cut(s) 758
PpsI GAGTC 1 cut(s) 758
Ppu21I YACGTR 1 cut(s) 353
PsiI TTATAA 2 cut(s) 240, 803
Psp6I CCWGG 2 cut(s) 738, 1347
PspGI CCWGG 2 cut(s) 738, 1347
PspN4I GGNNCC 1 cut(s) 1116
PsuI RGATCY 3 cut(s) 119, 1114, 1189
PsyI GACNNNGTC 1 cut(s) 626
RsaI GTAC 2 cut(s) 351, 897
RsaNI GTAC 2 cut(s) 350, 896
RseI CAYNNNNRTG 1 cut(s) 942
SaqAI TTAA 4 cut(s) 11, 44, 753, 1353
SatI GCNGC 1 cut(s) 678
Sau3AI GATC 9 cut(s) 119, 480, 691, 769, 787, 1114, 1189, 1210, 1300
SchI GAGTC 1 cut(s) 758
ScrFI CCNGG 2 cut(s) 740, 1349
SduI GDGCHC 2 cut(s) 176, 990
SetI ASST 8 cut(s) 225, 299, 355, 406, 494, 679, 1020, 1251
SfaNI GCATC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 942
SnaBI TACGTA 1 cut(s) 353
Sse9I AATT 9 cut(s) 213, 243, 318, 538, 662, 818, 1275, 1377, 1388
SsiI CCGC 4 cut(s) 161, 281, 1255, 1369
SspMI CTAG 1 cut(s) 617
StyD4I CCNGG 2 cut(s) 738, 1347
TaaI ACNGT 6 cut(s) 413, 748, 795, 967, 1198, 1313
TaiI ACGT 1 cut(s) 355
TaqI TCGA 4 cut(s) 170, 488, 836, 1123
TasI AATT 9 cut(s) 213, 243, 318, 538, 662, 818, 1275, 1377, 1388
TatI WGTACW 1 cut(s) 895
TfiI GAWTC 5 cut(s) 250, 263, 284, 566, 1154
Tru1I TTAA 4 cut(s) 11, 44, 753, 1353
Tru9I TTAA 4 cut(s) 11, 44, 753, 1353
TscAI CASTG 6 cut(s) 40, 418, 508, 921, 1075, 1318
TseFI GTSAC 2 cut(s) 407, 434
TseI GCWGC 1 cut(s) 677
Tsp45I GTSAC 2 cut(s) 407, 434
TspDTI ATGAA 9 cut(s) 32, 203, 243, 420, 911, 924, 995, 1120, 1314
TspGWI ACGGA 1 cut(s) 1293
TspRI CASTG 6 cut(s) 40, 418, 508, 921, 1075, 1318
Tth111I GACNNNGTC 1 cut(s) 626
XapI RAATTY 3 cut(s) 243, 1275, 1388
XceI RCATGY 1 cut(s) 105
XspI CTAG 1 cut(s) 617
Zsp2I ATGCAT 1 cut(s) 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.