Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006885.1

Orthogroup ID

OG0006277

Physical Location & Seq

Genomic Coordinates Forward (+)

22721 .. 29587

Gene Structure 6867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006885.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1863 bp

atgcggactggagcggaagctgaaccggggataatcaagaggtttcaatttgtcgttgacttgatgttgacgaagcgcagactccctttagtttcctccctctgtattctccctatgcgagctccctccgtaacctccctatgcgatctccatgcgatctccctccgtaacctccctatgcgaagccgtccgtatgatccaacagaagccgacatagtacttgtgtctctgaccgttaagagagagaagaacagtctttcacagagaaagagaaagagaaagagtcagctgcttattcagtggggtgccaaaggaggcatctgtgctgaaggaagcagtggtcttgagcatggcatgaaattttgtcaggtgaaaacagacacagacacagacgcattgaggcatctcactaccaaacaagtcaagattgtggtgcttatcacaagtacagatcaaatgccatctttaaaaatgaaggctcaatcaagcacaggatgtttaaaagagaaaaatgctcttcgtgtatgtcaaaagtcatgtgttatttccaagcaagcatgttcttatgtgaagagatgtgaacatacgacagatttcaactcttgtaaatgtcaggcggtttcctcgagcaccgaagtttctatgaaggaaaatggaagtggtgaagcaattgacgagcttgatgaagaagattataaaattctgattcagtcatgtgattctccaaccaaaagagcggaatcgttcgccacctgcccgtcaaacttggagacaattttctctccttcttttgaccctattgaagtacgtagcgaagcaaatagtgaaccaaatgcggagaatgatgcagggttgggagctggtgacagtgatgataacagaagttcatgtgacaatcaaagttgtgatgtttcagatttctacatatctgatatgatcatttcgagcttacccttcagtggggatgcatttactgatgatatttgtgaaacgaattgctttccggactacaaatgtgcggaatcaaacatcttgtttgatgtttctgagcaatacatggtattgcctttcctagaagacactgtccgaaatagtaatactaatactctggatgataaattatgtcaagaagctgttatggatacagatcgggctgccttgtatttagaaatgggtcaaatgagaccctgccaccaggatactgttgttaactcttctgactcagatcaggcagagtgcttcgatccacagttgtttataaaaaatttaccagaattatcagatgtggtatcgaactttcaacccaatatatcgcctgaggaagcttcaaaaagcaagtctgtaactcttgtacttgatttggatgaaacactggttcattctacattagaacattgcgatgacgcagacttcacatttactgtctttttcaacatgaaagagcacatggtatatgtgaaacagaggccatacctccaaacattcttggagcgagttgcagaaatgtttgatgttgttattttcactgccagccaaagcatatatgccgagcaacttcttgatatattggatccatatcgaaagttcatatctcgccgagtttatcgtgaatcatgccttttcgcagatggcagttacactaaagatctgacagtcttgggggttgatcttgcaaaagttgccattattgataatactccacaggttttccgcttgcaagtcaataatggaattcccataaagagttggtttgatgatccatccgacagtgcattgatttcattacttcctttcttagagaccctggttaatgctgatgatgtccgccccataattgccaagaaattcggtaacaaggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

620

Amino Acids

69.35

Weight (kDa)

4.83

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT5G46410 AT5G46410 AT5G46410
fragaria_vesca	FvH4_3g06370
malus_domestica	MD05G1291500.v1.1 MD10G1267500.v1.1
prunus_persica	Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1
pyrus_communis	pycom05g26800 pycom10g22350
rosa_chinensis	RchiOBHm_Chr5g0012931
rosa_laevigata	RLG00000031970
rosa_multiflora	Rmu_sc0006885.1_g000005
rosa_roxburghii	Rroxscaffold_1G00063650
rosa_rugosa	Rorug05G0005400
rosa_samantha	Rh5AG099600 Rh5BG096300 Rh5CG108500 Rh5DG094900
rosa_wichuraiana	Rw5G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	696, 1259
AarI	CACCTGC	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	761
AccB1I	GGYRCC	1 cut(s)	305
AccBSI	CCGCTC	2 cut(s)	14, 737
AccIII	TCCGGA	1 cut(s)	1003
AciI	CCGC	8 cut(s)	4, 14, 617, 737, 836, 1019, 1711, 1825
AclWI	GGATC	5 cut(s)	191, 1238, 1565, 1578, 1751
AcsI	RAATTY	5 cut(s)	359, 699, 1264, 1731, 1844
AcuI	CTGAAG	2 cut(s)	348, 940
AfaI	GTAC	4 cut(s)	219, 448, 807, 1353
AfiI	CCNNNNNNNGG	2 cut(s)	959, 960
AgsI	TTSAA	6 cut(s)	47, 598, 803, 1301, 1329, 1432
AjnI	CCWGG	2 cut(s)	1194, 1803
AluBI	AGCT	8 cut(s)	20, 122, 289, 679, 860, 948, 1133, 1325
AluI	AGCT	8 cut(s)	20, 122, 289, 679, 860, 948, 1133, 1325
Alw21I	GWGCWC	3 cut(s)	124, 632, 1446
Alw26I	GTCTC	4 cut(s)	231, 764, 1177, 1793
AlwI	GGATC	5 cut(s)	191, 1238, 1565, 1578, 1751
Ama87I	CYCGRG	1 cut(s)	625
Aor13HI	TCCGGA	1 cut(s)	1003
AoxI	GGCC	1 cut(s)	1466
ApeKI	GCWGC	2 cut(s)	289, 1154
ApoI	RAATTY	5 cut(s)	359, 699, 1264, 1731, 1844
ArsI	GACNNNNNNTTYG	2 cut(s)	1322, 1354
AspLEI	GCGC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	3 cut(s)	382, 674, 875
AvaI	CYCGRG	1 cut(s)	625
AxyI	CCTNAGG	1 cut(s)	1317
BaeI	ACNNNNGTAYC	2 cut(s)	1191, 1224
BamHI	GGATCC	1 cut(s)	1570
BanI	GGYRCC	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	124
BbsI	GAAGAC	1 cut(s)	1083
Bbv12I	GWGCWC	3 cut(s)	124, 632, 1446
BbvI	GCAGC	2 cut(s)	276, 1141
BccI	CCATC	3 cut(s)	469, 1622, 1768
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	2 cut(s)	134, 168
BciT130I	CCWGG	2 cut(s)	1196, 1805
BciVI	GTATCC	2 cut(s)	1135, 1192
BclI	TGATCA	1 cut(s)	936
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	4 cut(s)	231, 764, 1177, 1793
BfaI	CTAG	1 cut(s)	1073
BfuAI	ACCTGC	1 cut(s)	761
BfuI	GTATCC	2 cut(s)	1135, 1192
BglII	AGATCT	1 cut(s)	1645
BisI	GCNGC	2 cut(s)	290, 1155
BlsI	GCNGC	2 cut(s)	291, 1156
BmcAI	AGTACT	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	27, 1196, 1805
BmeT110I	CYCGRG	1 cut(s)	625
BmiI	GGNNCC	2 cut(s)	307, 1572
BmrFI	CCNGG	3 cut(s)	27, 1196, 1805
BmsI	GCATC	4 cut(s)	327, 412, 835, 955
BpiI	GAAGAC	1 cut(s)	1083
BpmI	CTGGAG	1 cut(s)	30
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	809
BsaBI	GATNNNNATC	2 cut(s)	1146, 1575
BsaI	GGTCTC	2 cut(s)	1177, 1793
BsaJI	CCNNGG	2 cut(s)	26, 1803
BsaWI	WCCGGW	1 cut(s)	1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	959, 960
Bse1I	ACTGG	2 cut(s)	13, 1377
Bse21I	CCTNAGG	1 cut(s)	1317
Bse3DI	GCAATG	1 cut(s)	1393
Bse8I	GATNNNNATC	2 cut(s)	1146, 1575
BseAI	TCCGGA	1 cut(s)	1003
BseBI	CCWGG	2 cut(s)	1196, 1805
BseDI	CCNNGG	2 cut(s)	26, 1803
BseGI	GGATG	5 cut(s)	500, 970, 1117, 1369, 1760
BseJI	GATNNNNATC	2 cut(s)	1146, 1575
BseLI	CCNNNNNNNGG	2 cut(s)	959, 960
BseMI	GCAATG	1 cut(s)	1393
BseMII	CTCAG	3 cut(s)	1038, 1236, 1308
BseNI	ACTGG	2 cut(s)	13, 1377
BseXI	GCAGC	2 cut(s)	276, 1141
BshFI	GGCC	1 cut(s)	1468
BshNI	GGYRCC	1 cut(s)	305
BsiHKAI	GWGCWC	3 cut(s)	124, 632, 1446
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	2 cut(s)	26, 1004
BslI	CCNNNNNNNGG	2 cut(s)	959, 960
BsmAI	GTCTC	4 cut(s)	231, 764, 1177, 1793
BsnI	GGCC	1 cut(s)	1468
Bso31I	GGTCTC	2 cut(s)	1177, 1793
BsoBI	CYCGRG	1 cut(s)	625
Bsp1286I	GDGCHC	3 cut(s)	124, 632, 1446
Bsp13I	TCCGGA	1 cut(s)	1003
BspACI	CCGC	8 cut(s)	4, 14, 617, 737, 836, 1019, 1711, 1825
BspANI	GGCC	1 cut(s)	1468
BspCNI	CTCAG	3 cut(s)	1039, 1235, 1309
BspEI	TCCGGA	1 cut(s)	1003
BspLI	GGNNCC	2 cut(s)	307, 1572
BspMI	ACCTGC	1 cut(s)	761
BspPI	GGATC	5 cut(s)	191, 1238, 1565, 1578, 1751
BspQI	GCTCTTC	1 cut(s)	522
BspT107I	GGYRCC	1 cut(s)	305
BspTNI	GGTCTC	2 cut(s)	1177, 1793
BsrBI	CCGCTC	2 cut(s)	14, 737
BsrDI	GCAATG	1 cut(s)	1393
BsrI	ACTGG	2 cut(s)	13, 1377
BssECI	CCNNGG	2 cut(s)	26, 1803
Bst2UI	CCWGG	2 cut(s)	1196, 1805
Bst4CI	ACNGT	9 cut(s)	235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
Bst6I	CTCTTC	3 cut(s)	522, 566, 1219
BstAPI	GCANNNNNTGC	1 cut(s)	1679
BstBAI	YACGTR	1 cut(s)	809
BstC8I	GCNNGC	4 cut(s)	120, 555, 1531, 1715
BstDEI	CTNAG	4 cut(s)	1047, 1222, 1317, 1795
BstF5I	GGATG	5 cut(s)	500, 970, 1117, 1369, 1760
BstHHI	GCGC	1 cut(s)	78
BstMAI	GTCTC	4 cut(s)	231, 764, 1177, 1793
BstMWI	GCNNNNNNNGC	1 cut(s)	1679
BstNI	CCWGG	2 cut(s)	1196, 1805
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	3 cut(s)	25, 1194, 1803
BstSNI	TACGTA	1 cut(s)	809
BstV1I	GCAGC	2 cut(s)	276, 1141
BstV2I	GAAGAC	1 cut(s)	1083
BstX2I	RGATCY	2 cut(s)	1570, 1645
BstYI	RGATCY	2 cut(s)	1570, 1645
Bsu36I	CCTNAGG	1 cut(s)	1317
BsuI	GTATCC	2 cut(s)	1135, 1192
BsuRI	GGCC	1 cut(s)	1468
BtgZI	GCGATG	1 cut(s)	1413
BtsCI	GGATG	5 cut(s)	500, 970, 1117, 1369, 1760
BtsI	GCAGTG	2 cut(s)	343, 1524
BtsIMutI	CAGTG	8 cut(s)	305, 343, 874, 964, 1080, 1370, 1524, 1774
BveI	ACCTGC	1 cut(s)	761
Cac8I	GCNNGC	4 cut(s)	120, 555, 1531, 1715
CfoI	GCGC	1 cut(s)	78
CseI	GACGC	2 cut(s)	401, 1412
Csp6I	GTAC	4 cut(s)	218, 447, 806, 1352
CviQI	GTAC	4 cut(s)	218, 447, 806, 1352
DdeI	CTNAG	4 cut(s)	1047, 1222, 1317, 1795
DraI	TTTAAA	2 cut(s)	468, 501
Eam1104I	CTCTTC	3 cut(s)	522, 566, 1219
EarI	CTCTTC	3 cut(s)	522, 566, 1219
EciI	GGCGGA	1 cut(s)	1814
Ecl136II	GAGCTC	1 cut(s)	122
Eco105I	TACGTA	1 cut(s)	809
Eco24I	GRGCYC	1 cut(s)	124
Eco31I	GGTCTC	2 cut(s)	1177, 1793
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	2 cut(s)	348, 940
Eco81I	CCTNAGG	1 cut(s)	1317
Eco88I	CYCGRG	1 cut(s)	625
EcoICRI	GAGCTC	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	1731
EcoRII	CCWGG	2 cut(s)	1194, 1803
EcoT22I	ATGCAT	1 cut(s)	970
EcoT38I	GRGCYC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	936
Fnu4HI	GCNGC	2 cut(s)	290, 1155
FokI	GGATG	5 cut(s)	507, 977, 1124, 1376, 1747
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	2 cut(s)	290, 1155
FspBI	CTAG	1 cut(s)	1073
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	2 cut(s)	290, 1155
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	1468
HapII	CCGG	2 cut(s)	26, 1004
HgaI	GACGC	2 cut(s)	401, 1412
HhaI	GCGC	1 cut(s)	78
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HincII	GTYRAC	3 cut(s)	58, 69, 1210
HindII	GTYRAC	3 cut(s)	58, 69, 1210
HindIII	AAGCTT	1 cut(s)	1323
HinfI	GANTC	8 cut(s)	81, 283, 706, 719, 740, 1022, 1220, 1610
HpaI	GTTAAC	1 cut(s)	1210
HpaII	CCGG	2 cut(s)	26, 1004
HphI	GGTGA	3 cut(s)	382, 674, 875
Hpy166II	GTNNAC	5 cut(s)	58, 69, 581, 827, 1210
Hpy188III	TCNNGA	8 cut(s)	37, 344, 424, 1004, 1109, 1127, 1559, 1607
Hpy8I	GTNNAC	5 cut(s)	58, 69, 581, 827, 1210
HpyAV	CCTTC	5 cut(s)	323, 469, 640, 795, 964
HpyCH4III	ACNGT	9 cut(s)	235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
HpyCH4IV	ACGT	1 cut(s)	808
HpyCH4V	TGCA	6 cut(s)	848, 968, 1499, 1673, 1717, 1772
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1679
HpyF3I	CTNAG	4 cut(s)	1047, 1222, 1317, 1795
HpySE526I	ACGT	1 cut(s)	808
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	1003
Ksp22I	TGATCA	1 cut(s)	936
KspAI	GTTAAC	1 cut(s)	1210
LguI	GCTCTTC	1 cut(s)	522
LmnI	GCTCC	4 cut(s)	11, 127, 857, 1489
Lsp1109I	GCAGC	2 cut(s)	276, 1141
LweI	GCATC	4 cut(s)	327, 412, 835, 955
MaeI	CTAG	1 cut(s)	1073
MaeII	ACGT	1 cut(s)	808
MaeIII	GTNAC	7 cut(s)	130, 167, 863, 890, 1342, 1634, 1850
MbiI	CCGCTC	2 cut(s)	14, 737
MboII	GAAGA	7 cut(s)	259, 509, 583, 698, 701, 1088, 1206
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	2 cut(s)	1570, 1645
MhlI	GDGCHC	3 cut(s)	124, 632, 1446
MlyI	GAGTC	3 cut(s)	75, 292, 1214
MmeI	TCCRAC	3 cut(s)	224, 749, 1788
Mph1103I	ATGCAT	1 cut(s)	970
MroI	TCCGGA	1 cut(s)	1003
MseI	TTAA	5 cut(s)	237, 467, 500, 1209, 1809
MslI	CAYNNNNRTG	1 cut(s)	1398
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	2 cut(s)	26, 1004
MspR9I	CCNGG	3 cut(s)	27, 1196, 1805
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	2 cut(s)	1196, 1805
MwoI	GCNNNNNNNGC	1 cut(s)	1679
NciI	CCSGG	1 cut(s)	27
NlaIV	GGNNCC	2 cut(s)	307, 1572
NmeAIII	GCCGAG	2 cut(s)	1573, 1622
NmuCI	GTSAC	2 cut(s)	863, 890
NsiI	ATGCAT	1 cut(s)	970
NspI	RCATGY	1 cut(s)	561
PaeR7I	CTCGAG	1 cut(s)	625
PaqCI	CACCTGC	1 cut(s)	761
PciSI	GCTCTTC	1 cut(s)	522
PfeI	GAWTC	5 cut(s)	706, 719, 740, 1022, 1610
PflFI	GACNNNGTC	1 cut(s)	1082
PkrI	GCNGC	2 cut(s)	291, 1156
PleI	GAGTC	3 cut(s)	75, 291, 1214
PpsI	GAGTC	3 cut(s)	75, 291, 1214
Ppu21I	YACGTR	1 cut(s)	809
PsiI	TTATAA	2 cut(s)	696, 1259
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	1194, 1803
PspGI	CCWGG	2 cut(s)	1194, 1803
PspN4I	GGNNCC	2 cut(s)	307, 1572
PspXI	VCTCGAGB	1 cut(s)	625
PsuI	RGATCY	2 cut(s)	1570, 1645
PsyI	GACNNNGTC	1 cut(s)	1082
PvuII	CAGCTG	1 cut(s)	289
RsaI	GTAC	4 cut(s)	219, 448, 807, 1353
RsaNI	GTAC	4 cut(s)	218, 447, 806, 1352
RseI	CAYNNNNRTG	1 cut(s)	1398
SacI	GAGCTC	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	522
SaqAI	TTAA	5 cut(s)	237, 467, 500, 1209, 1809
SatI	GCNGC	2 cut(s)	290, 1155
ScaI	AGTACT	1 cut(s)	219
SchI	GAGTC	3 cut(s)	75, 292, 1214
ScrFI	CCNGG	3 cut(s)	27, 1196, 1805
SduI	GDGCHC	3 cut(s)	124, 632, 1446
SfaNI	GCATC	4 cut(s)	327, 412, 835, 955
Sfr274I	CTCGAG	1 cut(s)	625
SlaI	CTCGAG	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	1398
SmlI	CTYRAG	2 cut(s)	344, 625
SmoI	CTYRAG	2 cut(s)	344, 625
SnaBI	TACGTA	1 cut(s)	809
SsiI	CCGC	8 cut(s)	4, 14, 617, 737, 836, 1019, 1711, 1825
SspMI	CTAG	1 cut(s)	1073
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	25, 1194, 1803
TaaI	ACNGT	9 cut(s)	235, 254, 869, 1084, 1204, 1251, 1423, 1654, 1769
TaiI	ACGT	1 cut(s)	811
TaqI	TCGA	5 cut(s)	626, 944, 1242, 1292, 1579
TatI	WGTACW	3 cut(s)	217, 446, 1351
TfiI	GAWTC	5 cut(s)	706, 719, 740, 1022, 1610
Tru1I	TTAA	5 cut(s)	237, 467, 500, 1209, 1809
Tru9I	TTAA	5 cut(s)	237, 467, 500, 1209, 1809
TscAI	CASTG	8 cut(s)	305, 343, 874, 964, 1087, 1377, 1531, 1774
TseFI	GTSAC	2 cut(s)	863, 890
TseI	GCWGC	2 cut(s)	289, 1154
Tsp45I	GTSAC	2 cut(s)	863, 890
TspGWI	ACGGA	3 cut(s)	118, 155, 180
TspRI	CASTG	8 cut(s)	305, 343, 874, 964, 1087, 1377, 1531, 1774
Tth111I	GACNNNGTC	1 cut(s)	1082
XapI	RAATTY	5 cut(s)	359, 699, 1264, 1731, 1844
XceI	RCATGY	1 cut(s)	561
XhoI	CTCGAG	1 cut(s)	625
XspI	CTAG	1 cut(s)	1073
ZrmI	AGTACT	1 cut(s)	219
Zsp2I	ATGCAT	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.