Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006277

Physical Location & Seq

Genomic Coordinates Forward (+)

8723424 .. 8727907

Gene Structure 4484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG096300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGGTATTTGCGAATCAGTTTGTAAATACTTTTTCTCTCCGTAAAACAGAAACAGACACAGACACATTGGGGCATCTCACTACCAAACAAGTCAAGATTGTGGTGCTTATCACAAGTACAGATCAAATGCCATCTTTAAAAATGAAGGCTCAATCAAGCACAGGATGTTTAAAAGAGAAAAATGCTCATCGTGTATGTCAAAAGTCATGTGTGATTTCCAAGCAAGCATGTTCTTATGTGAAGAGATCTGAACATACGACAGATTTCAACTCTTGTAAATGTCAGGCGGTTTCTTCGAGCACCCAAGTTTCTACGAAGGAAAATGGTAGTGGTGAAGCAATTGACGAGCTTGATGAAGAAGATTATAAAATTCTGATTCAGTCATGCGATTCTCCAACCAAAAGAGCGGAATCCTTCCCCACCTGCCCGTCAAACTTGGAGACAATTTTCTCTCCTTCTTTTGACCCAATTGAAGTACGTAGCGAAGCAAATAGTGAACCAAATGCGGAGAATGATGCAGGGTTGGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGACAATCAAAGTTGTGATGTTTCAGATTTCTACATATCTGATATGATCATTTCGAGCTTACCCTTCAGTGGGGATGCATTTACTGATGATATTTGTGAAACGAATTGCTTTCCGGACTACAAATGTGCTGAATCAAACATCTTGTTTGATGTTTCCGAGCAATACATGGTATTGCCTTTCCTAGAAGACACTGTCCGAAATAGTAATACTAATACTCTTGATGATAAATTATGTCAAGAAGCTGTTATGGATACAGATCGGGCTGGCTTGTATTTAGAAATGGGTCAAATGAGACCCTGCCACCAGGATACTGTTGTTAACTCTTCTGACTCAGATCAGGCAGAGTGCTTCGATCCACAGTTGTTTATAAAAAACTTACCAGAATTATCAGATGTGGTATCGAACTTTCAACCCAATATATTGCCTGAGGAAGCTTCAAAAAGCAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTAGAACATTGCGATGACGCAGACTTCACATTTACTGTCTTTTTCAACATGAAAGAGCACATGGTATATGTGAAACAGAGGCCATACCTCCAAACATTCTTGGAGCGAGTTGCAGAAATGTTTGATGTTGTTATTTTCACTGCCAGCCAAAGCATATATGCCGAGCAACTTCTTGATATATTGGATCCATATCGAAAGTTCATATCTCGCCGAGTTTATCGTGAATCATGCATTTTCACAGATGGCAGTTACACTAAAGATCTGACAGTCTTGGGGGTTGATCTTGCAAAAGTTGCCATTATTGATAATACTCCACAGGTTTTCCGCTTGCAAGTCAATAATGGAATTCCCATAAAGAGTTGGTTTGATGATCCGTCCGACAGTGCATTGATTTCATTACTTCCTTTCTTAGAGACCCTGGTTAATGCTGATGATGTCCGCCCCATAATTGCCAAGAAATTCGGTAACAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

510

Amino Acids

57.15

Weight (kDa)

4.47

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	339 - 499	4.8e-57	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT5G46410 AT5G46410 AT5G46410
fragaria_vesca	FvH4_3g06370
malus_domestica	MD05G1291500.v1.1 MD10G1267500.v1.1
prunus_persica	Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1
pyrus_communis	pycom05g26800 pycom10g22350
rosa_chinensis	RchiOBHm_Chr5g0012931
rosa_laevigata	RLG00000031970
rosa_multiflora	Rmu_sc0006885.1_g000005
rosa_roxburghii	Rroxscaffold_1G00063650
rosa_rugosa	Rorug05G0005400
rosa_samantha	Rh5AG099600 Rh5BG096300 Rh5CG108500 Rh5DG094900
rosa_wichuraiana	Rw5G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	366, 929
AarI	CACCTGC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	431
AccBSI	CCGCTC	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	5 cut(s)	287, 407, 506, 1381, 1495
AclWI	GGATC	4 cut(s)	908, 1235, 1248, 1421
AcsI	RAATTY	3 cut(s)	369, 1401, 1514
AcuI	CTGAAG	1 cut(s)	610
AfaI	GTAC	3 cut(s)	118, 477, 1023
AfiI	CCNNNNNNNGG	2 cut(s)	629, 630
AgsI	TTSAA	5 cut(s)	268, 473, 971, 999, 1102
AjnI	CCWGG	2 cut(s)	864, 1473
AluBI	AGCT	5 cut(s)	349, 530, 618, 803, 995
AluI	AGCT	5 cut(s)	349, 530, 618, 803, 995
Alw21I	GWGCWC	2 cut(s)	302, 1116
Alw26I	GTCTC	3 cut(s)	434, 847, 1463
AlwI	GGATC	4 cut(s)	908, 1235, 1248, 1421
Aor13HI	TCCGGA	1 cut(s)	673
AoxI	GGCC	1 cut(s)	1136
ApoI	RAATTY	3 cut(s)	369, 1401, 1514
ArsI	GACNNNNNNTTYG	2 cut(s)	992, 1024
AsuHPI	GGTGA	2 cut(s)	344, 545
AxyI	CCTNAGG	1 cut(s)	987
BaeI	ACNNNNGTAYC	2 cut(s)	861, 894
BamHI	GGATCC	1 cut(s)	1240
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	2 cut(s)	302, 1116
BccI	CCATC	2 cut(s)	139, 1292
BciT130I	CCWGG	2 cut(s)	866, 1475
BciVI	GTATCC	2 cut(s)	805, 862
BclI	TGATCA	1 cut(s)	606
BcoDI	GTCTC	3 cut(s)	434, 847, 1463
BfaI	CTAG	1 cut(s)	743
BfuAI	ACCTGC	1 cut(s)	431
BfuI	GTATCC	2 cut(s)	805, 862
BglII	AGATCT	2 cut(s)	245, 1315
Bme1390I	CCNGG	2 cut(s)	866, 1475
BmiI	GGNNCC	1 cut(s)	1242
BmrFI	CCNGG	2 cut(s)	866, 1475
BmsI	GCATC	3 cut(s)	82, 505, 625
BpiI	GAAGAC	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	479
BsaBI	GATNNNNATC	2 cut(s)	816, 1245
BsaI	GGTCTC	2 cut(s)	847, 1463
BsaJI	CCNNGG	1 cut(s)	1473
BsaWI	WCCGGW	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 630
Bse1I	ACTGG	1 cut(s)	1047
Bse21I	CCTNAGG	1 cut(s)	987
Bse3DI	GCAATG	1 cut(s)	1063
Bse8I	GATNNNNATC	2 cut(s)	816, 1245
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	2 cut(s)	866, 1475
BseDI	CCNNGG	1 cut(s)	1473
BseGI	GGATG	3 cut(s)	170, 640, 1039
BseJI	GATNNNNATC	2 cut(s)	816, 1245
BseLI	CCNNNNNNNGG	2 cut(s)	629, 630
BseMI	GCAATG	1 cut(s)	1063
BseMII	CTCAG	2 cut(s)	906, 978
BseNI	ACTGG	1 cut(s)	1047
BshFI	GGCC	1 cut(s)	1138
BsiHKAI	GWGCWC	2 cut(s)	302, 1116
BsiSI	CCGG	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	629, 630
BsmAI	GTCTC	3 cut(s)	434, 847, 1463
BsnI	GGCC	1 cut(s)	1138
Bso31I	GGTCTC	2 cut(s)	847, 1463
Bsp1286I	GDGCHC	2 cut(s)	302, 1116
Bsp13I	TCCGGA	1 cut(s)	673
BspACI	CCGC	5 cut(s)	287, 407, 506, 1381, 1495
BspANI	GGCC	1 cut(s)	1138
BspCNI	CTCAG	2 cut(s)	905, 979
BspEI	TCCGGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	1242
BspMI	ACCTGC	1 cut(s)	431
BspPI	GGATC	4 cut(s)	908, 1235, 1248, 1421
BspTNI	GGTCTC	2 cut(s)	847, 1463
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	1063
BsrI	ACTGG	1 cut(s)	1047
BssECI	CCNNGG	1 cut(s)	1473
Bst2UI	CCWGG	2 cut(s)	866, 1475
Bst4CI	ACNGT	7 cut(s)	539, 754, 874, 921, 1093, 1324, 1439
Bst6I	CTCTTC	2 cut(s)	236, 889
BstAPI	GCANNNNNTGC	1 cut(s)	1349
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	4 cut(s)	225, 826, 1201, 1385
BstDEI	CTNAG	3 cut(s)	892, 987, 1465
BstF5I	GGATG	3 cut(s)	170, 640, 1039
BstMAI	GTCTC	3 cut(s)	434, 847, 1463
BstMWI	GCNNNNNNNGC	1 cut(s)	1349
BstNI	CCWGG	2 cut(s)	866, 1475
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	864, 1473
BstSNI	TACGTA	1 cut(s)	479
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	3 cut(s)	245, 1240, 1315
BstYI	RGATCY	3 cut(s)	245, 1240, 1315
Bsu36I	CCTNAGG	1 cut(s)	987
BsuI	GTATCC	2 cut(s)	805, 862
BsuRI	GGCC	1 cut(s)	1138
BtgZI	GCGATG	1 cut(s)	1083
BtsCI	GGATG	3 cut(s)	170, 640, 1039
BtsI	GCAGTG	1 cut(s)	1194
BtsIMutI	CAGTG	6 cut(s)	544, 634, 750, 1040, 1194, 1444
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	4 cut(s)	225, 826, 1201, 1385
CseI	GACGC	1 cut(s)	1082
Csp6I	GTAC	3 cut(s)	117, 476, 1022
CviAII	CATG	8 cut(s)	207, 228, 384, 558, 727, 1105, 1117, 1284
CviQI	GTAC	3 cut(s)	117, 476, 1022
DdeI	CTNAG	3 cut(s)	892, 987, 1465
DraI	TTTAAA	2 cut(s)	138, 171
Eam1104I	CTCTTC	2 cut(s)	236, 889
EarI	CTCTTC	2 cut(s)	236, 889
EciI	GGCGGA	1 cut(s)	1484
Eco105I	TACGTA	1 cut(s)	479
Eco31I	GGTCTC	2 cut(s)	847, 1463
Eco57I	CTGAAG	1 cut(s)	610
Eco81I	CCTNAGG	1 cut(s)	987
EcoRI	GAATTC	1 cut(s)	1401
EcoRII	CCWGG	2 cut(s)	864, 1473
EcoT22I	ATGCAT	2 cut(s)	640, 1289
FaeI	CATG	8 cut(s)	210, 231, 387, 561, 730, 1108, 1120, 1287
FatI	CATG	8 cut(s)	206, 227, 383, 557, 726, 1104, 1116, 1283
FbaI	TGATCA	1 cut(s)	606
FokI	GGATG	3 cut(s)	177, 647, 1046
FspBI	CTAG	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	1138
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	1082
Hin1II	CATG	8 cut(s)	210, 231, 387, 561, 730, 1108, 1120, 1287
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	993
HinfI	GANTC	7 cut(s)	13, 376, 389, 410, 692, 890, 1280
HpaI	GTTAAC	1 cut(s)	880
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	2 cut(s)	344, 545
Hpy166II	GTNNAC	2 cut(s)	497, 880
Hpy188III	TCNNGA	6 cut(s)	94, 674, 779, 797, 1229, 1277
Hpy8I	GTNNAC	2 cut(s)	497, 880
HpyAV	CCTTC	5 cut(s)	139, 310, 424, 465, 634
HpyCH4III	ACNGT	7 cut(s)	539, 754, 874, 921, 1093, 1324, 1439
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	7 cut(s)	518, 638, 1169, 1287, 1343, 1387, 1442
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1349
HpyF3I	CTNAG	3 cut(s)	892, 987, 1465
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	8 cut(s)	210, 231, 387, 561, 730, 1108, 1120, 1287
Kpn2I	TCCGGA	1 cut(s)	673
Ksp22I	TGATCA	1 cut(s)	606
KspAI	GTTAAC	1 cut(s)	880
LmnI	GCTCC	2 cut(s)	527, 1159
LweI	GCATC	3 cut(s)	82, 505, 625
MaeI	CTAG	1 cut(s)	743
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	5 cut(s)	533, 560, 1012, 1304, 1520
MbiI	CCGCTC	1 cut(s)	407
MboII	GAAGA	6 cut(s)	253, 285, 368, 371, 758, 876
MfeI	CAATTG	2 cut(s)	339, 468
MflI	RGATCY	3 cut(s)	245, 1240, 1315
MhlI	GDGCHC	2 cut(s)	302, 1116
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	2 cut(s)	419, 1458
MnlI	CCTC	3 cut(s)	982, 1128, 1154
Mph1103I	ATGCAT	2 cut(s)	640, 1289
MroI	TCCGGA	1 cut(s)	673
MseI	TTAA	4 cut(s)	137, 170, 879, 1479
MslI	CAYNNNNRTG	1 cut(s)	1068
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	2 cut(s)	866, 1475
MunI	CAATTG	2 cut(s)	339, 468
MvaI	CCWGG	2 cut(s)	866, 1475
MwoI	GCNNNNNNNGC	1 cut(s)	1349
NlaIII	CATG	8 cut(s)	210, 231, 387, 561, 730, 1108, 1120, 1287
NlaIV	GGNNCC	1 cut(s)	1242
NmeAIII	GCCGAG	2 cut(s)	1243, 1292
NmuCI	GTSAC	2 cut(s)	533, 560
NsiI	ATGCAT	2 cut(s)	640, 1289
NspI	RCATGY	1 cut(s)	231
PaqCI	CACCTGC	1 cut(s)	431
PfeI	GAWTC	6 cut(s)	13, 376, 389, 410, 692, 1280
PflFI	GACNNNGTC	1 cut(s)	752
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
Ppu21I	YACGTR	1 cut(s)	479
PsiI	TTATAA	2 cut(s)	366, 929
Psp6I	CCWGG	2 cut(s)	864, 1473
PspGI	CCWGG	2 cut(s)	864, 1473
PspN4I	GGNNCC	1 cut(s)	1242
PsuI	RGATCY	3 cut(s)	245, 1240, 1315
PsyI	GACNNNGTC	1 cut(s)	752
RsaI	GTAC	3 cut(s)	118, 477, 1023
RsaNI	GTAC	3 cut(s)	117, 476, 1022
RseI	CAYNNNNRTG	1 cut(s)	1068
SaqAI	TTAA	4 cut(s)	137, 170, 879, 1479
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	2 cut(s)	866, 1475
SduI	GDGCHC	2 cut(s)	302, 1116
SetI	ASST	9 cut(s)	351, 425, 481, 532, 620, 805, 997, 1146, 1377
SfaNI	GCATC	3 cut(s)	82, 505, 625
SmiMI	CAYNNNNRTG	1 cut(s)	1068
SnaBI	TACGTA	1 cut(s)	479
SsiI	CCGC	5 cut(s)	287, 407, 506, 1381, 1495
SspMI	CTAG	1 cut(s)	743
StyD4I	CCNGG	2 cut(s)	864, 1473
TaaI	ACNGT	7 cut(s)	539, 754, 874, 921, 1093, 1324, 1439
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	5 cut(s)	296, 614, 912, 962, 1249
TatI	WGTACW	2 cut(s)	116, 1021
TfiI	GAWTC	6 cut(s)	13, 376, 389, 410, 692, 1280
Tru1I	TTAA	4 cut(s)	137, 170, 879, 1479
Tru9I	TTAA	4 cut(s)	137, 170, 879, 1479
TscAI	CASTG	6 cut(s)	544, 634, 757, 1047, 1201, 1444
TseFI	GTSAC	2 cut(s)	533, 560
Tsp45I	GTSAC	2 cut(s)	533, 560
TspDTI	ATGAA	8 cut(s)	158, 369, 546, 1037, 1050, 1121, 1246, 1440
TspGWI	ACGGA	2 cut(s)	29, 1419
TspRI	CASTG	6 cut(s)	544, 634, 757, 1047, 1201, 1444
Tth111I	GACNNNGTC	1 cut(s)	752
XapI	RAATTY	3 cut(s)	369, 1401, 1514
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	743
Zsp2I	ATGCAT	2 cut(s)	640, 1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.