Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006277

Physical Location & Seq

Genomic Coordinates Forward (+)

3622379 .. 3630002

Gene Structure 7624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G074000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGCCATCTTTCAAAATGAAGGCTCAATCAAGCACGGGATGTTTACGAGAAAAAAACGGTCTTCGTGTATGTCAAAAGTCAAGTGTGATTACCAAGAAAGCATGTTCTCATGTTAGGAAATCTGAACATACAGCGGATCTTGACACTTGTACAAATTGTCAGGAAGTTTCTTCGAGCATGGACGTTTCTATTAAGGAAATTGGACGTGATGAAGCAATTGACCATCAGGAATTGCTGGATGAACAAGATTGTAAGCAATCATGCAATTCTGAAACCAAAAGGATGGAGTCATCTCACACCTGCCCATCAAATTTAGAGACAATTTTCTCTCCTGCTTTGGAGTCTAGTGAATCCCATGGCGAACCAAATAGTGAACCAACTGCTGACATTGATGCGGGGTTAGGAGCTGGTGACAGTGATGATAACAGAAGTTCATGTGATAATCAAACTTGCGATGTCTCAGATTTCTACATTTCTGACATGATCATTTCGAGCTTACCCTTCAACGAGAATGCATTTGATGTTGATATTGGTGAAACGAATTGCTTTCCTGACTACAAATGTGCTGAACCAAATATGTTCTTTGATGCGTCTGAGCAATACATGGTATTGCCTTTCCTAGAGGACACTTTCAGAAGCAGTAATATTAATATTGATGTTGACAAATCATGTGAAGAAGCCATCGTAGATACAGATTGTGCTGGAATGTATTCGGAAATGGGTCAAATGAGCCCCTGCAACCAGGAAACTGTTGTTAGTTCTTCTGACTCAGATCAGGCGGAGTCCTTTGATCCACAGTTGTTTATAAAAAATTTACCCGAATTATCAGATGTGGTATCAAATTATCAACCCAACATATTGCCTGAGGATGCTCCAAAAAGAAAGTCTGTAACTCTTGTACTTGATTTGGATGAAACACTGGTTCATTCTACATTGGAACATCTTGATGATGCAGACTTCACATTTACCGTCTTTTTCAACATGAAAGAGCACACGGTATATGTGAAACAGAGGCCTTACCTCCAAACATTCTTGGAGAAAGTTGCAGAAATGTTTGAAGTTGTTATTTTTACGGCCAGCCAAAGCATATATGCAGAGCAACTTCTTGATATATTGGATCCATATGCAAAGCTTATATCTCGCAGAGTTTATCGTGAATCTTGCATTTTCTCAGATGGCAGTTACACTAAAGATTTGACAGTTTTAGGTGTTGATCTTGCAAAAGTTGCCATAATTGATAATACTCCACAGGTTTTCCGATTGCAAGTTAATAATGGAATTCCTATAAAGAGTTGGTTTGATGATCCATCCGATAGTGCTCTGATTTCATTACTTCCCTTCTTAGAGACCCTGGTTAATGCTGATGATGTTCGTCCAATAATTGCCAAGAGATTCGGTAACAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0036211 GO:0042578 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NIF

Protein Analysis

470

Amino Acids

52.43

Weight (kDa)

4.37

Isoelectric Point (pI)

54.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006277)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT4G18140 AT5G46410 AT5G46410 AT5G46410
fragaria_vesca	FvH4_3g06370
malus_domestica	MD05G1291500.v1.1 MD10G1267500.v1.1
prunus_persica	Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1 Prupe.4G074000_v2.0.a1
pyrus_communis	pycom05g26800 pycom10g22350
rosa_chinensis	RchiOBHm_Chr5g0012931
rosa_laevigata	RLG00000031970
rosa_multiflora	Rmu_sc0006885.1_g000005
rosa_roxburghii	Rroxscaffold_1G00063650
rosa_rugosa	Rorug05G0005400
rosa_samantha	Rh5AG099600 Rh5BG096300 Rh5CG108500 Rh5DG094900
rosa_wichuraiana	Rw5G008700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	806
AarI	CACCTGC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	308
AciI	CCGC	3 cut(s)	134, 395, 779
AclWI	GGATC	5 cut(s)	144, 785, 1112, 1125, 1298
AcoI	YGGCCR	1 cut(s)	1074
AcsI	RAATTY	3 cut(s)	310, 811, 1278
AfaI	GTAC	2 cut(s)	151, 900
AgsI	TTSAA	4 cut(s)	13, 505, 979, 1058
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	741, 1350
AluBI	AGCT	3 cut(s)	407, 495, 1132
AluI	AGCT	3 cut(s)	407, 495, 1132
Alw21I	GWGCWC	2 cut(s)	993, 1321
Alw26I	GTCTC	3 cut(s)	311, 463, 1340
AlwI	GGATC	5 cut(s)	144, 785, 1112, 1125, 1298
AoxI	GGCC	2 cut(s)	1013, 1074
ApoI	RAATTY	3 cut(s)	310, 811, 1278
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
AseI	ATTAAT	1 cut(s)	648
Asp700I	GAANNNNTTC	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	422, 545
AxyI	CCTNAGG	1 cut(s)	864
BamHI	GGATCC	1 cut(s)	1117
BanII	GRGCYC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	993, 1321
BccI	CCATC	7 cut(s)	13, 231, 277, 313, 689, 1169, 1315
BceAI	ACGGC	1 cut(s)	1089
BciT130I	CCWGG	2 cut(s)	743, 1352
BclI	TGATCA	1 cut(s)	483
BcoDI	GTCTC	3 cut(s)	311, 463, 1340
BfaI	CTAG	2 cut(s)	345, 620
BfuAI	ACCTGC	1 cut(s)	308
Bme1390I	CCNGG	2 cut(s)	743, 1352
BmgBI	CACGTC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	1119
BmrFI	CCNGG	2 cut(s)	743, 1352
BmsI	GCATC	4 cut(s)	382, 577, 859, 940
BpiI	GAAGAC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	1340
BsaJI	CCNNGG	2 cut(s)	355, 1350
Bse1I	ACTGG	1 cut(s)	924
Bse21I	CCTNAGG	1 cut(s)	864
BseBI	CCWGG	2 cut(s)	743, 1352
BseDI	CCNNGG	2 cut(s)	355, 1350
BseGI	GGATG	6 cut(s)	44, 244, 288, 874, 916, 1307
BseMII	CTCAG	5 cut(s)	474, 585, 783, 855, 1185
BseNI	ACTGG	1 cut(s)	924
BshFI	GGCC	2 cut(s)	1015, 1076
BsiHKAI	GWGCWC	2 cut(s)	993, 1321
BsmAI	GTCTC	3 cut(s)	311, 463, 1340
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	1015, 1076
Bso31I	GGTCTC	1 cut(s)	1340
Bsp1286I	GDGCHC	3 cut(s)	734, 993, 1321
Bsp1407I	TGTACA	1 cut(s)	149
Bsp143I	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
Bsp19I	CCATGG	1 cut(s)	355
BspACI	CCGC	3 cut(s)	134, 395, 779
BspANI	GGCC	2 cut(s)	1015, 1076
BspCNI	CTCAG	5 cut(s)	473, 586, 782, 856, 1184
BspLI	GGNNCC	1 cut(s)	1119
BspMI	ACCTGC	1 cut(s)	308
BspPI	GGATC	5 cut(s)	144, 785, 1112, 1125, 1298
BspTNI	GGTCTC	1 cut(s)	1340
BsrGI	TGTACA	1 cut(s)	149
BsrI	ACTGG	1 cut(s)	924
BssECI	CCNNGG	2 cut(s)	355, 1350
BssMI	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	2 cut(s)	743, 1352
Bst4CI	ACNGT	7 cut(s)	59, 416, 751, 798, 970, 997, 1201
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstAUI	TGTACA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	1078
BstDEI	CTNAG	6 cut(s)	460, 594, 769, 864, 1171, 1342
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	6 cut(s)	44, 244, 288, 874, 916, 1307
BstKTI	GATC	7 cut(s)	139, 486, 775, 793, 1120, 1216, 1306
BstMAI	GTCTC	3 cut(s)	311, 463, 1340
BstMBI	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
BstMWI	GCNNNNNNNGC	1 cut(s)	1226
BstNI	CCWGG	2 cut(s)	743, 1352
BstNSI	RCATGY	1 cut(s)	105
BstSCI	CCNGG	2 cut(s)	741, 1350
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	136, 1117
BstXI	CCANNNNNNTGG	1 cut(s)	283
BstYI	RGATCY	2 cut(s)	136, 1117
Bsu36I	CCTNAGG	1 cut(s)	864
BsuRI	GGCC	2 cut(s)	1015, 1076
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	468
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	6 cut(s)	44, 244, 288, 874, 916, 1307
BtsIMutI	CAGTG	2 cut(s)	421, 917
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	1 cut(s)	1078
CseI	GACGC	1 cut(s)	579
Csp6I	GTAC	2 cut(s)	150, 899
CviJI	RGCY	9 cut(s)	23, 407, 495, 680, 732, 1015, 1076, 1080, 1132
CviKI_1	RGCY	9 cut(s)	23, 407, 495, 680, 732, 1015, 1076, 1080, 1132
CviQI	GTAC	2 cut(s)	150, 899
DdeI	CTNAG	6 cut(s)	460, 594, 769, 864, 1171, 1342
DpnI	GATC	7 cut(s)	138, 485, 774, 792, 1119, 1215, 1305
DpnII	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
EaeI	YGGCCR	1 cut(s)	1074
EciI	GGCGGA	1 cut(s)	794
Eco130I	CCWWGG	1 cut(s)	355
Eco147I	AGGCCT	1 cut(s)	1015
Eco24I	GRGCYC	1 cut(s)	734
Eco31I	GGTCTC	1 cut(s)	1340
Eco81I	CCTNAGG	1 cut(s)	864
EcoRI	GAATTC	1 cut(s)	1278
EcoRII	CCWGG	2 cut(s)	741, 1350
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	1 cut(s)	734
ErhI	CCWWGG	1 cut(s)	355
FauI	CCCGC	1 cut(s)	388
FauNDI	CATATG	1 cut(s)	1123
FbaI	TGATCA	1 cut(s)	483
FokI	GGATG	6 cut(s)	51, 251, 295, 881, 923, 1294
FriOI	GRGCYC	1 cut(s)	734
FspBI	CTAG	2 cut(s)	345, 620
HaeIII	GGCC	2 cut(s)	1015, 1076
HgaI	GACGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	1130
HinfI	GANTC	7 cut(s)	287, 341, 350, 767, 782, 1157, 1392
HphI	GGTGA	2 cut(s)	422, 545
Hpy166II	GTNNAC	3 cut(s)	44, 374, 661
Hpy188III	TCNNGA	7 cut(s)	140, 161, 227, 551, 944, 1106, 1154
Hpy8I	GTNNAC	3 cut(s)	44, 374, 661
HpyAV	CCTTC	3 cut(s)	13, 511, 1348
HpyCH4III	ACNGT	7 cut(s)	59, 416, 751, 798, 970, 997, 1201
HpyCH4IV	ACGT	2 cut(s)	183, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1226
HpyF3I	CTNAG	6 cut(s)	460, 594, 769, 864, 1171, 1342
HpySE526I	ACGT	2 cut(s)	183, 205
Ksp22I	TGATCA	1 cut(s)	483
Kzo9I	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
LmnI	GCTCC	2 cut(s)	404, 877
LweI	GCATC	4 cut(s)	382, 577, 859, 940
MaeI	CTAG	2 cut(s)	345, 620
MaeII	ACGT	2 cut(s)	183, 205
MaeIII	GTNAC	4 cut(s)	410, 889, 1181, 1397
MalI	GATC	7 cut(s)	138, 485, 774, 792, 1119, 1215, 1305
MboI	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
MboII	GAAGA	4 cut(s)	53, 162, 686, 753
MfeI	CAATTG	1 cut(s)	216
MflI	RGATCY	2 cut(s)	136, 1117
MhlI	GDGCHC	3 cut(s)	734, 993, 1321
MlyI	GAGTC	4 cut(s)	296, 350, 761, 791
MnlI	CCTC	4 cut(s)	616, 859, 1005, 1031
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	709
MseI	TTAA	4 cut(s)	192, 648, 1269, 1356
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	743, 1352
MunI	CAATTG	1 cut(s)	216
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	743, 1352
MwoI	GCNNNNNNNGC	1 cut(s)	1226
NcoI	CCATGG	1 cut(s)	355
NdeI	CATATG	1 cut(s)	1123
NdeII	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
NlaIV	GGNNCC	1 cut(s)	1119
NmuCI	GTSAC	1 cut(s)	410
NsiI	ATGCAT	1 cut(s)	517
NspI	RCATGY	1 cut(s)	105
PaqCI	CACCTGC	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	1015
PctI	GAATGC	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	709
PfeI	GAWTC	3 cut(s)	350, 1157, 1392
PleI	GAGTC	4 cut(s)	295, 349, 761, 790
PpsI	GAGTC	4 cut(s)	295, 349, 761, 790
PshBI	ATTAAT	1 cut(s)	648
PsiI	TTATAA	1 cut(s)	806
Psp6I	CCWGG	2 cut(s)	741, 1350
PspGI	CCWGG	2 cut(s)	741, 1350
PspN4I	GGNNCC	1 cut(s)	1119
PsuI	RGATCY	2 cut(s)	136, 1117
RsaI	GTAC	2 cut(s)	151, 900
RsaNI	GTAC	2 cut(s)	150, 899
RseI	CAYNNNNRTG	1 cut(s)	945
SaqAI	TTAA	4 cut(s)	192, 648, 1269, 1356
Sau3AI	GATC	7 cut(s)	136, 483, 772, 790, 1117, 1213, 1303
SchI	GAGTC	4 cut(s)	296, 350, 761, 791
ScrFI	CCNGG	2 cut(s)	743, 1352
SduI	GDGCHC	3 cut(s)	734, 993, 1321
SetI	ASST	9 cut(s)	186, 208, 302, 409, 497, 1023, 1134, 1210, 1254
SfaNI	GCATC	4 cut(s)	382, 577, 859, 940
SmiMI	CAYNNNNRTG	1 cut(s)	945
SseBI	AGGCCT	1 cut(s)	1015
SsiI	CCGC	3 cut(s)	134, 395, 779
SspI	AATATT	2 cut(s)	646, 652
SspMI	CTAG	2 cut(s)	345, 620
StuI	AGGCCT	1 cut(s)	1015
StyD4I	CCNGG	2 cut(s)	741, 1350
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	7 cut(s)	59, 416, 751, 798, 970, 997, 1201
TaiI	ACGT	2 cut(s)	186, 208
TaqI	TCGA	2 cut(s)	173, 491
TatI	WGTACW	2 cut(s)	149, 898
TfiI	GAWTC	3 cut(s)	350, 1157, 1392
Tru1I	TTAA	4 cut(s)	192, 648, 1269, 1356
Tru9I	TTAA	4 cut(s)	192, 648, 1269, 1356
TscAI	CASTG	2 cut(s)	421, 924
TseFI	GTSAC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	8 cut(s)	32, 225, 255, 423, 914, 927, 998, 1317
TspRI	CASTG	2 cut(s)	421, 924
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	3 cut(s)	310, 811, 1278
XceI	RCATGY	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	709
XspI	CTAG	2 cut(s)	345, 620
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.