FvH4_3g07840

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004530
Physical Location & Seq
Forward (+)
4611259 .. 4612137
879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g07840.t1

Sequence Viewer

Length: 411 bp
ATGGCTGAGAAGGAAGGAGGAATCGTCAAGAAGGGCCACGAAGAGGGACTGGCATTGGCAACTTCACTTCTCCAAGAGTTTGAGCTTCCACTCGGACTTTTGCCCCTTGCTGATGTGATTGAAGTTGGTTTCGTGAGGAGCACCGGCTACATGTGGATCGTCCAGAAGAAGAAGGTCGAGCACAGTTTCAAGATCATCAGTAAGCTTGTGAGCTATGACACAGAGATTAAAGGATATGTTGAGAAGCAGAGGATCAAGAAGCTGAAGGGAGTGAAGGCCAAGGAACTCATGTTGTGGCCTCCAGTCAGTGAAATCATTGCTGATGCGCAACCAACCGGAAAGATTCACTTCAAGAGCCTTGCCGGCATCACCAAAACTTTTCCAGTTGAGGCGTTTGCTGCTGGTCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

137

Amino Acids

15.04

Weight (kDa)

9.22

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 21 - 133 2.5e-33 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 327
AclWI GGATC 2 cut(s) 164, 260
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 122, 190, 352
AluBI AGCT 4 cut(s) 85, 205, 213, 262
AluI AGCT 4 cut(s) 85, 205, 213, 262
Alw21I GWGCWC 2 cut(s) 143, 183
AlwI GGATC 2 cut(s) 164, 260
AoxI GGCC 3 cut(s) 34, 276, 296
ApeKI GCWGC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 143, 183
BbvI GCAGC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmgT120I GGNCC 1 cut(s) 34
BmsI GCATC 2 cut(s) 313, 375
BpmI CTGGAG 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 279
BsaWI WCCGGW 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 2 cut(s) 143, 362
Bse1I ACTGG 3 cut(s) 54, 302, 383
Bse3DI GCAATG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 3 cut(s) 54, 302, 383
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 385
BshFI GGCC 3 cut(s) 36, 278, 298
BsiHKAI GWGCWC 2 cut(s) 143, 183
BsiSI CCGG 3 cut(s) 144, 336, 363
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 36, 278, 298
Bsp1286I GDGCHC 2 cut(s) 143, 183
Bsp143I GATC 3 cut(s) 156, 192, 252
BspANI GGCC 3 cut(s) 36, 278, 298
BspPI GGATC 2 cut(s) 164, 260
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 2 cut(s) 143, 362
BsrI ACTGG 3 cut(s) 54, 302, 383
BssAI RCCGGY 2 cut(s) 143, 362
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 3 cut(s) 156, 192, 252
BssT1I CCWWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 159, 195, 255
BstMBI GATC 3 cut(s) 156, 192, 252
BstMWI GCNNNNNNNGC 2 cut(s) 363, 398
BstNSI RCATGY 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 385
BsuRI GGCC 3 cut(s) 36, 278, 298
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 2 cut(s) 143, 362
Cfr13I GGNCC 1 cut(s) 34
CviAII CATG 2 cut(s) 151, 289
DdeI CTNAG 1 cut(s) 6
DpnI GATC 3 cut(s) 158, 194, 254
DpnII GATC 3 cut(s) 156, 192, 252
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 279
Eco57I CTGAAG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 2 cut(s) 154, 292
FaiI YATR 4 cut(s) 152, 216, 237, 290
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 1 cut(s) 60
FatI CATG 2 cut(s) 150, 288
Fnu4HI GCNGC 1 cut(s) 399
Fsp4HI GCNGC 1 cut(s) 399
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 3 cut(s) 36, 278, 298
HapII CCGG 3 cut(s) 144, 336, 363
HhaI GCGC 1 cut(s) 328
Hin1II CATG 2 cut(s) 154, 292
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 2 cut(s) 21, 343
HpaII CCGG 3 cut(s) 144, 336, 363
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 6 cut(s) 28, 133, 163, 190, 256, 352
HpyAV CCTTC 6 cut(s) 4, 8, 25, 166, 259, 268
HpyCH4III ACNGT 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 398
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 154, 292
HspAI GCGC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 362
KroNI GCCGGC 1 cut(s) 364
Kzo9I GATC 3 cut(s) 156, 192, 252
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 8 cut(s) 35, 157, 176, 315, 349, 376, 387, 396
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 313, 375
MalI GATC 3 cut(s) 158, 194, 254
MboI GATC 3 cut(s) 156, 192, 252
MboII GAAGA 3 cut(s) 53, 178, 181
MhlI GDGCHC 2 cut(s) 143, 183
MnlI CCTC 6 cut(s) 11, 37, 129, 243, 309, 382
MroNI GCCGGC 1 cut(s) 362
MseI TTAA 1 cut(s) 228
MspI CCGG 3 cut(s) 144, 336, 363
MwoI GCNNNNNNNGC 2 cut(s) 363, 398
NaeI GCCGGC 1 cut(s) 364
NdeII GATC 3 cut(s) 156, 192, 252
NgoMIV GCCGGC 1 cut(s) 362
NlaIII CATG 2 cut(s) 154, 292
NsbI TGCGCA 1 cut(s) 327
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PdiI GCCGGC 1 cut(s) 364
PfeI GAWTC 2 cut(s) 21, 343
PkrI GCNGC 1 cut(s) 400
PscI ACATGT 1 cut(s) 150
PspPI GGNCC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 3 cut(s) 156, 192, 252
Sau96I GGNCC 1 cut(s) 34
SduI GDGCHC 2 cut(s) 143, 183
SetI ASST 5 cut(s) 87, 177, 207, 215, 264
SfaNI GCATC 2 cut(s) 313, 375
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 185
TaqI TCGA 1 cut(s) 177
TfiI GAWTC 2 cut(s) 21, 343
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 313
TseI GCWGC 1 cut(s) 398
TspRI CASTG 1 cut(s) 313
XceI RCATGY 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.