Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005230.1

Orthogroup ID

OG0004530

Physical Location & Seq

Genomic Coordinates Reverse (-)

60696 .. 61100

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005230.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

atggcagcagagaaagtaggaggcattgtgaagaaaggccacgaggaaggcctaaaattagccacctcaatcctccaacaattccaacttcctcaaggaattcttccactggccgaagtcattgaagttggattcgtggagagcaccgggtacgtgtggattgtgcaagcgaagaaggtcgagcatgagttcaagatgattagcaagcttgtgagctatgacactgaaataacgggctacgtcgagaagaagaggatcaagaaactcaagggagtgaaggccaaggagctcatgctgtggcctccagtgagtgagatcacagttgatgagccacccactgggaagattcactttaagagccttgctgggatcactaagaccttccctgttgaggcatttgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

134

Amino Acids

14.87

Weight (kDa)

9.03

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07840 FvH4_6g24940
malus_domestica	MD05G1301700.v1.1 MD05G1301800.v1.1 MD10G1280600.v1.1 MD10G1280700.v1.1
prunus_persica	Prupe.3G121500_v2.0.a1 Prupe.4G060600_v2.0.a1 Prupe.4G060700_v2.0.a1
pyrus_communis	pycom10g23440
rosa_chinensis	RchiOBHm_Chr2g0129271 RchiOBHm_Chr5g0010731
rosa_laevigata	RLG00000019070 RLG00000031774
rosa_multiflora	Rmu_co8401749.1_g000001 Rmu_sc0005230.1_g000010 Rmu_sc0005230.1_g000011 Rmu_sc0024422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114710
rosa_rugosa	Rorug02G0285900 Rorug04G0451800
rosa_samantha	Rh2AG337800 Rh2BG345600 Rh2CG325200 Rh2DG363100 Rh5AG083600 Rh5BG078800 Rh5CG091600 Rh5DG079000
rosa_wichuraiana	Rw0G000620 Rw0G022320 Rw2G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	338
AclWI	GGATC	2 cut(s)	263, 377
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	99
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	338, 391
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	125, 193
AluBI	AGCT	3 cut(s)	208, 216, 289
AluI	AGCT	3 cut(s)	208, 216, 289
Alw21I	GWGCWC	2 cut(s)	146, 291
AlwI	GGATC	2 cut(s)	263, 377
AoxI	GGCC	5 cut(s)	37, 49, 111, 279, 299
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	291
BauI	CACGAG	1 cut(s)	41
Bbv12I	GWGCWC	2 cut(s)	146, 291
BbvI	GCAGC	1 cut(s)	17
BcnI	CCSGG	1 cut(s)	148
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	148
BmrFI	CCNGG	1 cut(s)	148
BmrI	ACTGGG	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	78, 251
BpuMI	CCSGG	1 cut(s)	148
BsaAI	YACGTR	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 391
Bse1I	ACTGG	3 cut(s)	114, 305, 343
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	2 cut(s)	338, 391
BseNI	ACTGG	3 cut(s)	114, 305, 343
BseXI	GCAGC	1 cut(s)	17
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	5 cut(s)	39, 51, 113, 281, 301
BsiHKAI	GWGCWC	2 cut(s)	146, 291
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	2 cut(s)	338, 391
BsnI	GGCC	5 cut(s)	39, 51, 113, 281, 301
Bsp1286I	GDGCHC	2 cut(s)	146, 291
Bsp143I	GATC	3 cut(s)	255, 315, 369
BspANI	GGCC	5 cut(s)	39, 51, 113, 281, 301
BspPI	GGATC	2 cut(s)	263, 377
BsrI	ACTGG	3 cut(s)	114, 305, 343
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	255, 315, 369
BssSI	CACGAG	1 cut(s)	41
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	154
BstC8I	GCNNGC	2 cut(s)	168, 206
BstDEI	CTNAG	1 cut(s)	375
BstKTI	GATC	3 cut(s)	258, 318, 372
BstMBI	GATC	3 cut(s)	255, 315, 369
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	17
BsuRI	GGCC	5 cut(s)	39, 51, 113, 281, 301
BtsIMutI	CAGTG	4 cut(s)	107, 222, 312, 336
Cac8I	GCNNGC	2 cut(s)	168, 206
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	2 cut(s)	185, 292
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	3 cut(s)	257, 317, 371
DpnII	GATC	3 cut(s)	255, 315, 369
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
Ecl136II	GAGCTC	1 cut(s)	289
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	291
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoRI	GAATTC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	291
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	188, 295
FaiI	YATR	3 cut(s)	186, 219, 293
FalI	AAGNNNNNCTT	4 cut(s)	87, 119, 335, 367
FatI	CATG	2 cut(s)	184, 291
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
GsaI	CCCAGC	1 cut(s)	369
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	5 cut(s)	39, 51, 113, 281, 301
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	2 cut(s)	188, 295
HindIII	AAGCTT	1 cut(s)	206
HinfI	GANTC	2 cut(s)	132, 346
HpaII	CCGG	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	193, 244, 259
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	4 cut(s)	41, 169, 271, 391
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	153, 240
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	1 cut(s)	375
HpySE526I	ACGT	2 cut(s)	153, 240
Hsp92II	CATG	2 cut(s)	188, 295
Kzo9I	GATC	3 cut(s)	255, 315, 369
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	95, 160, 318, 324, 351, 399
Lsp1109I	GCAGC	1 cut(s)	17
MaeII	ACGT	2 cut(s)	153, 240
MalI	GATC	3 cut(s)	257, 317, 371
MboI	GATC	3 cut(s)	255, 315, 369
MboII	GAAGA	6 cut(s)	43, 95, 184, 259, 262, 355
MhlI	GDGCHC	2 cut(s)	146, 291
MluCI	AATT	3 cut(s)	56, 80, 99
MmeI	TCCRAC	3 cut(s)	100, 109, 109
MnlI	CCTC	8 cut(s)	14, 37, 76, 83, 102, 246, 312, 385
MseI	TTAA	2 cut(s)	354, 403
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	148
NciI	CCSGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	255, 315, 369
NlaIII	CATG	2 cut(s)	188, 295
PceI	AGGCCT	1 cut(s)	51
PfeI	GAWTC	2 cut(s)	132, 346
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	7
Ppu21I	YACGTR	1 cut(s)	154
Psp124BI	GAGCTC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SacI	GAGCTC	1 cut(s)	291
SaqAI	TTAA	2 cut(s)	354, 403
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	255, 315, 369
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	2 cut(s)	146, 291
SetI	ASST	8 cut(s)	68, 156, 180, 210, 218, 243, 291, 383
SmlI	CTYRAG	2 cut(s)	93, 266
SmoI	CTYRAG	2 cut(s)	93, 266
Sse9I	AATT	3 cut(s)	56, 80, 99
SseBI	AGGCCT	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	291
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	2 cut(s)	156, 243
TaqI	TCGA	2 cut(s)	180, 243
TasI	AATT	3 cut(s)	56, 80, 99
TfiI	GAWTC	2 cut(s)	132, 346
Tru1I	TTAA	2 cut(s)	354, 403
Tru9I	TTAA	2 cut(s)	354, 403
TscAI	CASTG	4 cut(s)	114, 229, 312, 343
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	4 cut(s)	114, 229, 312, 343
Van91I	CCANNNNNTGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.