FvH4_6g24940

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004530
Physical Location & Seq
Reverse (-)
18875664 .. 18877784
2121 bp
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UTR
Exon/CDS
Intron
FvH4_6g24940.t1

Sequence Viewer

Length: 411 bp
ATGGCAGAGAAGGAAGGAGGCATCATCAAGAAGGGACACGAAGAGGGACTGGCATTGGCAACTGCACTTCTCCAAGAGTTTGAGCTTCCACTCGGACTTTTGCCCCTTGCTGATGTGATTGAAGTTGGTTTCGTGAGGAGTACTGGCTACATGTGGATCGTCCAGAAGAAGAAGGTTGAGCACAGTTTCAAGATCATCGGTAAGCTTGTGAGTTATGACACAGAGATCAAAGGATATGTTGAGAAGCAGAGGATCAAGAAGCTGAAGGGAGTGAAGGCCAAAGAGCTCATGTTGTGGCCTCCAGTGAGTGAAATCATTGCTGATGCGCAACCAACCGGAAAGATTCACTTCAAGAGCCTTGCTGGCATCACCAAAACTTTTCCAGTTGAGGCGTTCGCTGCTGGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

9.22

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 21 - 133 4.7e-33 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 327
AclWI GGATC 2 cut(s) 164, 260
AcuI CTGAAG 1 cut(s) 284
AfaI GTAC 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 3 cut(s) 122, 190, 352
AluBI AGCT 4 cut(s) 85, 205, 262, 286
AluI AGCT 4 cut(s) 85, 205, 262, 286
Alw21I GWGCWC 2 cut(s) 183, 288
AlwI GGATC 2 cut(s) 164, 260
AoxI GGCC 2 cut(s) 276, 296
ApeKI GCWGC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 361
BanII GRGCYC 1 cut(s) 288
Bbv12I GWGCWC 2 cut(s) 183, 288
BbvI GCAGC 1 cut(s) 385
BglI GCCNNNNNGGC 1 cut(s) 363
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 142
BmsI GCATC 3 cut(s) 30, 313, 375
BpmI CTGGAG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 335
Bse1I ACTGG 4 cut(s) 54, 148, 302, 383
Bse3DI GCAATG 1 cut(s) 315
BseMI GCAATG 1 cut(s) 315
BseNI ACTGG 4 cut(s) 54, 148, 302, 383
BseRI GAGGAG 1 cut(s) 151
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 48
BshFI GGCC 2 cut(s) 278, 298
BsiHKAI GWGCWC 2 cut(s) 183, 288
BsiSI CCGG 1 cut(s) 336
BslFI GGGAC 2 cut(s) 48, 60
BsmFI GGGAC 2 cut(s) 48, 60
BsnI GGCC 2 cut(s) 278, 298
Bsp1286I GDGCHC 2 cut(s) 183, 288
Bsp143I GATC 4 cut(s) 156, 192, 225, 252
BspANI GGCC 2 cut(s) 278, 298
BspPI GGATC 2 cut(s) 164, 260
BsrDI GCAATG 1 cut(s) 315
BsrI ACTGG 4 cut(s) 54, 148, 302, 383
BssMI GATC 4 cut(s) 156, 192, 225, 252
Bst4CI ACNGT 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 364
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 4 cut(s) 159, 195, 228, 255
BstMBI GATC 4 cut(s) 156, 192, 225, 252
BstMWI GCNNNNNNNGC 2 cut(s) 363, 398
BstNSI RCATGY 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 278, 298
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 1 cut(s) 364
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 141
CviAII CATG 2 cut(s) 151, 289
CviJI RGCY 8 cut(s) 85, 147, 205, 262, 278, 286, 298, 357
CviKI_1 RGCY 8 cut(s) 85, 147, 205, 262, 278, 286, 298, 357
CviQI GTAC 1 cut(s) 141
DpnI GATC 4 cut(s) 158, 194, 227, 254
DpnII GATC 4 cut(s) 156, 192, 225, 252
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 286
Eco24I GRGCYC 1 cut(s) 288
Eco53kI GAGCTC 1 cut(s) 286
Eco57I CTGAAG 1 cut(s) 284
EcoICRI GAGCTC 1 cut(s) 286
EcoT38I GRGCYC 1 cut(s) 288
FaeI CATG 2 cut(s) 154, 292
FaiI YATR 4 cut(s) 152, 216, 237, 290
FalI AAGNNNNNCTT 2 cut(s) 332, 364
FaqI GGGAC 2 cut(s) 48, 60
FatI CATG 2 cut(s) 150, 288
Fnu4HI GCNGC 1 cut(s) 399
FriOI GRGCYC 1 cut(s) 288
Fsp4HI GCNGC 1 cut(s) 399
FspI TGCGCA 1 cut(s) 327
GlaI GCGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 399
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 278, 298
HapII CCGG 1 cut(s) 336
HhaI GCGC 1 cut(s) 328
Hin1II CATG 2 cut(s) 154, 292
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 203
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 336
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 95
Hpy188III TCNNGA 6 cut(s) 28, 133, 163, 190, 256, 352
HpyAV CCTTC 6 cut(s) 4, 8, 25, 166, 259, 268
HpyCH4III ACNGT 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 363, 398
Hsp92II CATG 2 cut(s) 154, 292
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 4 cut(s) 156, 192, 225, 252
LpnPI CCDG 8 cut(s) 35, 129, 176, 315, 348, 349, 387, 396
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 3 cut(s) 30, 313, 375
MalI GATC 4 cut(s) 158, 194, 227, 254
MboI GATC 4 cut(s) 156, 192, 225, 252
MboII GAAGA 3 cut(s) 53, 178, 181
MhlI GDGCHC 2 cut(s) 183, 288
MnlI CCTC 6 cut(s) 11, 37, 129, 243, 309, 382
MspI CCGG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 363, 398
NdeII GATC 4 cut(s) 156, 192, 225, 252
NlaIII CATG 2 cut(s) 154, 292
NsbI TGCGCA 1 cut(s) 327
NspI RCATGY 1 cut(s) 154
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 1 cut(s) 343
PkrI GCNGC 1 cut(s) 400
PscI ACATGT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 288
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
SacI GAGCTC 1 cut(s) 288
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 4 cut(s) 156, 192, 225, 252
ScaI AGTACT 1 cut(s) 142
SduI GDGCHC 2 cut(s) 183, 288
SetI ASST 5 cut(s) 87, 177, 207, 264, 288
SfaNI GCATC 3 cut(s) 30, 313, 375
SstI GAGCTC 1 cut(s) 288
TaaI ACNGT 1 cut(s) 185
TatI WGTACW 1 cut(s) 140
TfiI GAWTC 1 cut(s) 343
TscAI CASTG 1 cut(s) 309
TseI GCWGC 1 cut(s) 398
TspRI CASTG 1 cut(s) 309
XceI RCATGY 1 cut(s) 154
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.