Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004530

Physical Location & Seq

Genomic Coordinates Reverse (-)

2891853 .. 2892263

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCAGAGAAGGAAGGAGGAATCATCAAGAAGGGCCACGAAGAGGGACTGGGGTTGGCGACTGCGCTGCTGCAAGAGTTTGAACTTCCACTTGGGCTTTTGCCCCTGGCCGATGTGATTGAAGTCGGGTTTGTGAGGAGCACTGGCTACATGTGGATCCTCCAAAAGAAGAAAGTCGAACACAGCTTCAAATTGATCAGTAAGCTTGTGAGTTATGACTCTGAAATTAAAGGCTATATTGAAAAGAAGAGGATTAAGAAGCTCAAGGGAGTGAAGGCCAAGGAACTCATGCTCTGGCCACCAGTCAGTGAAATAACTGCTGATGAACAGCCCACTGGAAAGATTCACTTCAAGAGCCTCGCTGGCATCACCAAGACTTTTCCGGTTGATGCATTTGCTGCTGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

137

Amino Acids

15.07

Weight (kDa)

9.2

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07840 FvH4_6g24940
malus_domestica	MD05G1301700.v1.1 MD05G1301800.v1.1 MD10G1280600.v1.1 MD10G1280700.v1.1
prunus_persica	Prupe.3G121500_v2.0.a1 Prupe.4G060600_v2.0.a1 Prupe.4G060700_v2.0.a1
pyrus_communis	pycom10g23440
rosa_chinensis	RchiOBHm_Chr2g0129271 RchiOBHm_Chr5g0010731
rosa_laevigata	RLG00000019070 RLG00000031774
rosa_multiflora	Rmu_co8401749.1_g000001 Rmu_sc0005230.1_g000010 Rmu_sc0005230.1_g000011 Rmu_sc0024422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114710
rosa_rugosa	Rorug02G0285900 Rorug04G0451800
rosa_samantha	Rh2AG337800 Rh2BG345600 Rh2CG325200 Rh2DG363100 Rh5AG083600 Rh5BG078800 Rh5CG091600 Rh5DG079000
rosa_wichuraiana	Rw0G000620 Rw0G022320 Rw2G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	151, 164
AcoI	YGGCCR	2 cut(s)	108, 296
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	5 cut(s)	83, 122, 190, 242, 352
AjnI	CCWGG	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	186, 205, 262
AluI	AGCT	3 cut(s)	186, 205, 262
Alw21I	GWGCWC	1 cut(s)	143
AlwI	GGATC	2 cut(s)	151, 164
AoxI	GGCC	4 cut(s)	34, 108, 276, 296
ApeKI	GCWGC	3 cut(s)	67, 70, 398
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	361
BalI	TGGCCA	1 cut(s)	298
BamHI	GGATCC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	54, 57, 385
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	1 cut(s)	195
BglI	GCCNNNNNGGC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	68, 71, 399
BlsI	GCNGC	3 cut(s)	69, 72, 400
Bme1390I	CCNGG	1 cut(s)	107
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	375, 379
BmuI	ACTGGG	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	105, 279
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	4 cut(s)	54, 148, 302, 340
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	105, 279
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	4 cut(s)	54, 148, 302, 340
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	54, 57, 385
BseYI	CCCAGC	1 cut(s)	401
BshFI	GGCC	4 cut(s)	36, 110, 278, 298
BsiHKAI	GWGCWC	1 cut(s)	143
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	4 cut(s)	36, 110, 278, 298
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	2 cut(s)	156, 195
BspANI	GGCC	4 cut(s)	36, 110, 278, 298
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	151, 164
BsrI	ACTGG	4 cut(s)	54, 148, 302, 340
BssECI	CCNNGG	2 cut(s)	105, 279
BssMI	GATC	2 cut(s)	156, 195
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	36, 242
BstAPI	GCANNNNNTGC	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	364
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	159, 198
BstMBI	GATC	2 cut(s)	156, 195
BstMWI	GCNNNNNNNGC	2 cut(s)	363, 398
BstNI	CCWGG	1 cut(s)	107
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	105
BstV1I	GCAGC	3 cut(s)	54, 57, 385
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	4 cut(s)	36, 110, 278, 298
BtsIMutI	CAGTG	3 cut(s)	141, 313, 333
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	2 cut(s)	151, 289
DpnI	GATC	2 cut(s)	158, 197
DpnII	GATC	2 cut(s)	156, 195
EaeI	YGGCCR	2 cut(s)	108, 296
Eam1104I	CTCTTC	2 cut(s)	36, 242
EarI	CTCTTC	2 cut(s)	36, 242
Eco130I	CCWWGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	154, 292
FaiI	YATR	4 cut(s)	152, 216, 237, 290
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	2 cut(s)	150, 288
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	68, 71, 399
Fsp4HI	GCNGC	3 cut(s)	68, 71, 399
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	68, 71, 399
GsaI	CCCAGC	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	36, 110, 278, 298
HapII	CCGG	1 cut(s)	383
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	154, 292
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	3 cut(s)	21, 218, 343
HpaII	CCGG	1 cut(s)	383
HphI	GGTGA	1 cut(s)	361
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	28, 352
HpyAV	CCTTC	4 cut(s)	4, 8, 25, 268
HpyCH4V	TGCA	2 cut(s)	73, 392
HpyF10VI	GCNNNNNNNGC	2 cut(s)	363, 398
Hsp92II	CATG	2 cut(s)	154, 292
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	156, 195
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	3 cut(s)	54, 57, 385
LweI	GCATC	2 cut(s)	375, 379
MalI	GATC	2 cut(s)	158, 197
MboI	GATC	2 cut(s)	156, 195
MboII	GAAGA	3 cut(s)	53, 181, 259
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	298
MluCI	AATT	2 cut(s)	191, 225
MluNI	TGGCCA	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	6 cut(s)	11, 37, 129, 170, 243, 368
Mox20I	TGGCCA	1 cut(s)	298
Mph1103I	ATGCAT	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	298
MseI	TTAA	2 cut(s)	228, 255
Msp20I	TGGCCA	1 cut(s)	298
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	1 cut(s)	107
MvaI	CCWGG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	363, 398
NdeII	GATC	2 cut(s)	156, 195
NlaIII	CATG	2 cut(s)	154, 292
NlaIV	GGNNCC	1 cut(s)	158
NsiI	ATGCAT	1 cut(s)	394
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	21, 343
PkrI	GCNGC	3 cut(s)	69, 72, 400
PleI	GAGTC	1 cut(s)	212
PpsI	GAGTC	1 cut(s)	212
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	105
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	156
SaqAI	TTAA	2 cut(s)	228, 255
SatI	GCNGC	3 cut(s)	68, 71, 399
Sau3AI	GATC	2 cut(s)	156, 195
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	188, 207, 264
SfaNI	GCATC	2 cut(s)	375, 379
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	2 cut(s)	191, 225
StyD4I	CCNGG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	279
TaqI	TCGA	1 cut(s)	177
TasI	AATT	2 cut(s)	191, 225
TfiI	GAWTC	2 cut(s)	21, 343
Tru1I	TTAA	2 cut(s)	228, 255
Tru9I	TTAA	2 cut(s)	228, 255
TscAI	CASTG	3 cut(s)	148, 313, 340
TseI	GCWGC	3 cut(s)	67, 70, 398
TspDTI	ATGAA	1 cut(s)	339
TspRI	CASTG	3 cut(s)	148, 313, 340
XceI	RCATGY	1 cut(s)	154
Zsp2I	ATGCAT	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.