Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004530

Physical Location & Seq

Genomic Coordinates Reverse (-)

25588611 .. 25591259

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g23440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGAGGAATGATAGTGGATATGGAAGTGATATGGTTTGTTTTGAAGATGATTTTGGGTCAGAAACGGACAAGTTAAAGCTTTCACACGAGTCTCGGTACTTTGAGGATTGGACCGATGCTATGCCTCCGTCTTTTGTCAATGGTTGTGCGGCAGTTAAGAGGAGAGAAAAGATAAATGCTGCCAAGCAGCAAAATGATAGGATTATGCGTCCATCAAATGCTCGTTCAGGTAACAGCAGCGATATTTGCGCTTCTGAAGGGGTACATACCAGGAAGAAAAGAAAGAGAGGACGTGGGATTGATTGGGAAGATTTAATTATTGAAACCCTCCTCCTACACAGAGTAAAAGAGGAGGAATCGAGAAGGGTACTTACAACTTCACTGCTTCATTCAATACTTCAAGAAAATAATTTTTTGATCATGGCGGAGAAGGAAGGAGGAATCGTGAAGAAGGGCCACGAGGAGGGACTGGCATTGGCGACCGCCTTGCTCAAGGAGTTTGAACTTCCGCTAGGGCTTTTGCCACTTGCTGAGGTGATCGAAGTTGGCTTTGTGAGGGCCACCGGCTACATGTGGATCGTCCAGAAGAAGAAGGTCGAGCACAGCTTCAAGCTGATCGGTAAGCTTGTGAGTTACGACATTGAAATCAAAGGCTATATTGAGAAGCAGAGGATTAAGAAGCTCAAGGGAGTGAAGGCTAAGGAGCTCATGCTATGGCCTCCGGTCAGTGAAATAAATGTTGATCAGCCCGCCGGAAAAATCAACTTCAAGAGCCTTGCCGGTATCACCAAGACTTTCCCGGTCGAGGCATTCGCAGCCGGGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

276

Amino Acids

31.01

Weight (kDa)

8.94

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07840 FvH4_6g24940
malus_domestica	MD05G1301700.v1.1 MD05G1301800.v1.1 MD10G1280600.v1.1 MD10G1280700.v1.1
prunus_persica	Prupe.3G121500_v2.0.a1 Prupe.4G060600_v2.0.a1 Prupe.4G060700_v2.0.a1
pyrus_communis	pycom10g23440
rosa_chinensis	RchiOBHm_Chr2g0129271 RchiOBHm_Chr5g0010731
rosa_laevigata	RLG00000019070 RLG00000031774
rosa_multiflora	Rmu_co8401749.1_g000001 Rmu_sc0005230.1_g000010 Rmu_sc0005230.1_g000011 Rmu_sc0024422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114710
rosa_rugosa	Rorug02G0285900 Rorug04G0451800
rosa_samantha	Rh2AG337800 Rh2BG345600 Rh2CG325200 Rh2DG363100 Rh5AG083600 Rh5BG078800 Rh5CG091600 Rh5DG079000
rosa_wichuraiana	Rw0G000620 Rw0G022320 Rw2G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	149, 425, 483, 509, 750
AclWI	GGATC	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	98, 264, 369
AfiI	CCNNNNNNNGG	2 cut(s)	463, 805
AflIII	ACRYGT	1 cut(s)	570
AgsI	TTSAA	8 cut(s)	44, 323, 393, 401, 503, 610, 644, 769
AjiI	CACGTC	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	269
AjuI	GAANNNNNNNTTGG	2 cut(s)	36, 68
AluBI	AGCT	6 cut(s)	79, 606, 613, 625, 682, 706
AluI	AGCT	6 cut(s)	79, 606, 613, 625, 682, 706
Alw21I	GWGCWC	2 cut(s)	603, 708
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	3 cut(s)	454, 558, 716
ApeKI	GCWGC	4 cut(s)	179, 187, 237, 815
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	111, 454, 558
AsuC2I	CCSGG	2 cut(s)	800, 820
AsuHPI	GGTGA	2 cut(s)	547, 778
AvaII	GGWCC	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	708
BarI	GAAGNNNNNNTAC	2 cut(s)	355, 387
BauI	CACGAG	2 cut(s)	86, 458
Bbv12I	GWGCWC	2 cut(s)	603, 708
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	3 cut(s)	166, 199, 249
BccI	CCATC	1 cut(s)	220
BcgI	CGANNNNNNTGC	2 cut(s)	469, 503
BciT130I	CCWGG	1 cut(s)	271
BclI	TGATCA	2 cut(s)	417, 742
BcnI	CCSGG	2 cut(s)	800, 820
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	1 cut(s)	512
BisI	GCNGC	5 cut(s)	150, 180, 188, 238, 816
BlsI	GCNGC	5 cut(s)	151, 181, 189, 239, 817
Bme1390I	CCNGG	3 cut(s)	271, 800, 820
Bme18I	GGWCC	1 cut(s)	111
BmgBI	CACGTC	1 cut(s)	293
BmgT120I	GGNCC	3 cut(s)	111, 454, 558
BmrFI	CCNGG	3 cut(s)	271, 800, 820
BmsI	GCATC	1 cut(s)	106
Bpu10I	CCTNAGC	2 cut(s)	531, 699
BpuEI	CTTGAG	2 cut(s)	476, 668
BpuMI	CCSGG	2 cut(s)	800, 820
BsaWI	WCCGGW	1 cut(s)	721
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	463, 805
Bse118I	RCCGGY	2 cut(s)	563, 779
Bse1I	ACTGG	1 cut(s)	474
BseBI	CCWGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	2 cut(s)	463, 805
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	474
BseRI	GAGGAG	4 cut(s)	175, 320, 365, 476
BseXI	GCAGC	3 cut(s)	166, 199, 249
Bsh1285I	CGRYCG	2 cut(s)	483, 804
BshFI	GGCC	3 cut(s)	456, 560, 718
BsiEI	CGRYCG	2 cut(s)	483, 804
BsiHKAI	GWGCWC	2 cut(s)	603, 708
BsiSI	CCGG	6 cut(s)	564, 722, 753, 780, 800, 819
BslFI	GGGAC	1 cut(s)	480
BslI	CCNNNNNNNGG	2 cut(s)	463, 805
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	809
BsnI	GGCC	3 cut(s)	456, 560, 718
Bsp1286I	GDGCHC	2 cut(s)	603, 708
Bsp143I	GATC	5 cut(s)	417, 537, 576, 615, 742
BspACI	CCGC	5 cut(s)	149, 425, 483, 509, 750
BspANI	GGCC	3 cut(s)	456, 560, 718
BspCNI	CTCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	584
BsrFI	RCCGGY	2 cut(s)	563, 779
BsrI	ACTGG	1 cut(s)	474
BssAI	RCCGGY	2 cut(s)	563, 779
BssMI	GATC	5 cut(s)	417, 537, 576, 615, 742
BssSI	CACGAG	2 cut(s)	86, 458
Bst2BI	CACGAG	2 cut(s)	86, 458
Bst2UI	CCWGG	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	2 cut(s)	531, 699
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	5 cut(s)	420, 540, 579, 618, 745
BstMAI	GTCTC	1 cut(s)	96
BstMBI	GATC	5 cut(s)	417, 537, 576, 615, 742
BstMCI	CGRYCG	2 cut(s)	483, 804
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 815
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	3 cut(s)	269, 798, 818
BstV1I	GCAGC	3 cut(s)	166, 199, 249
BsuRI	GGCC	3 cut(s)	456, 560, 718
BtrI	CACGTC	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	380, 733
Cac8I	GCNNGC	1 cut(s)	750
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	2 cut(s)	563, 779
Cfr13I	GGNCC	3 cut(s)	111, 454, 558
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	97, 263, 368
CviAII	CATG	3 cut(s)	421, 571, 709
CviQI	GTAC	3 cut(s)	97, 263, 368
DdeI	CTNAG	2 cut(s)	531, 699
DpnI	GATC	5 cut(s)	419, 539, 578, 617, 744
DpnII	GATC	5 cut(s)	417, 537, 576, 615, 742
EciI	GGCGGA	1 cut(s)	440
Ecl136II	GAGCTC	1 cut(s)	706
Eco24I	GRGCYC	1 cut(s)	708
Eco47I	GGWCC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	706
Eco57I	CTGAAG	1 cut(s)	276
EcoICRI	GAGCTC	1 cut(s)	706
EcoRII	CCWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	708
FaeI	CATG	3 cut(s)	424, 574, 712
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	3 cut(s)	420, 570, 708
FauI	CCCGC	1 cut(s)	757
FbaI	TGATCA	2 cut(s)	417, 742
Fnu4HI	GCNGC	5 cut(s)	150, 180, 188, 238, 816
FriOI	GRGCYC	1 cut(s)	708
Fsp4HI	GCNGC	5 cut(s)	150, 180, 188, 238, 816
FspBI	CTAG	1 cut(s)	512
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	150, 180, 188, 238, 816
HaeIII	GGCC	3 cut(s)	456, 560, 718
HapII	CCGG	6 cut(s)	564, 722, 753, 780, 800, 819
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	3 cut(s)	424, 574, 712
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HindIII	AAGCTT	2 cut(s)	77, 623
HinfI	GANTC	3 cut(s)	89, 356, 441
HpaII	CCGG	6 cut(s)	564, 722, 753, 780, 800, 819
HphI	GGTGA	2 cut(s)	547, 778
Hpy188I	TCNGA	2 cut(s)	61, 256
Hpy188III	TCNNGA	5 cut(s)	360, 401, 445, 583, 769
HpyAV	CCTTC	7 cut(s)	251, 357, 424, 428, 445, 586, 688
HpyCH4IV	ACGT	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 815
HpyF3I	CTNAG	2 cut(s)	531, 699
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	3 cut(s)	424, 574, 712
HspAI	GCGC	1 cut(s)	249
Ksp22I	TGATCA	2 cut(s)	417, 742
Kzo9I	GATC	5 cut(s)	417, 537, 576, 615, 742
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	3 cut(s)	166, 199, 249
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	512
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	230, 632
MalI	GATC	5 cut(s)	419, 539, 578, 617, 744
MboI	GATC	5 cut(s)	417, 537, 576, 615, 742
MboII	GAAGA	6 cut(s)	56, 286, 320, 460, 598, 601
MhlI	GDGCHC	2 cut(s)	603, 708
MluCI	AATT	2 cut(s)	315, 409
MlyI	GAGTC	1 cut(s)	98
MseI	TTAA	4 cut(s)	74, 156, 314, 675
MspI	CCGG	6 cut(s)	564, 722, 753, 780, 800, 819
MspR9I	CCNGG	3 cut(s)	271, 800, 820
Mva1269I	GAATGC	1 cut(s)	809
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	246, 815
NciI	CCSGG	2 cut(s)	800, 820
NdeII	GATC	5 cut(s)	417, 537, 576, 615, 742
NlaIII	CATG	3 cut(s)	424, 574, 712
NspI	RCATGY	1 cut(s)	574
PciI	ACATGT	1 cut(s)	570
PctI	GAATGC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	356, 441
PkrI	GCNGC	5 cut(s)	151, 181, 189, 239, 817
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	570
Psp124BI	GAGCTC	1 cut(s)	708
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspPI	GGNCC	3 cut(s)	111, 454, 558
RsaI	GTAC	3 cut(s)	98, 264, 369
RsaNI	GTAC	3 cut(s)	97, 263, 368
SacI	GAGCTC	1 cut(s)	708
SaqAI	TTAA	4 cut(s)	74, 156, 314, 675
SatI	GCNGC	5 cut(s)	150, 180, 188, 238, 816
Sau3AI	GATC	5 cut(s)	417, 537, 576, 615, 742
Sau96I	GGNCC	3 cut(s)	111, 454, 558
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	271, 800, 820
SduI	GDGCHC	2 cut(s)	603, 708
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	111
SmlI	CTYRAG	2 cut(s)	491, 683
SmoI	CTYRAG	2 cut(s)	491, 683
Sse9I	AATT	2 cut(s)	315, 409
SsiI	CCGC	5 cut(s)	149, 425, 483, 509, 750
SspMI	CTAG	1 cut(s)	512
SstI	GAGCTC	1 cut(s)	708
StyD4I	CCNGG	3 cut(s)	269, 798, 818
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	4 cut(s)	359, 540, 597, 804
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	2 cut(s)	315, 409
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	2 cut(s)	356, 441
Tru1I	TTAA	4 cut(s)	74, 156, 314, 675
Tru9I	TTAA	4 cut(s)	74, 156, 314, 675
TscAI	CASTG	2 cut(s)	387, 733
TseI	GCWGC	4 cut(s)	179, 187, 237, 815
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	2 cut(s)	80, 117
TspRI	CASTG	2 cut(s)	387, 733
VpaK11BI	GGWCC	1 cut(s)	111
XceI	RCATGY	1 cut(s)	574
XspI	CTAG	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.