Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0004530

Physical Location & Seq

Genomic Coordinates Forward (+)

2892550 .. 2893540

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G060700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCAGAGAAGGAAGGAGGAATTGTCAAGAAGGGCCATGAAGAGGGACTGGCATTGGCAACTGCGCTGCTCCAGGAGTTTGATCTTCCTCTAGGGCTCTTGCCCCTTGCCGATGTGATCGAAGTGGGCTTTGTGAGGAGCACCGGCTACATGTGGATCCTCCAGAAGAAGAAGGTTGAGCACAGCTTCAAATTGATCAGTAAGCTTGTGAGTTATGACACTGAAATTAAAGGCTACATTGAAAACAAGAGAATTAAGAAGCTCAAGGGAGTGAAGGCTAAGGAGCTCATGCTCTGGCCTCCAGTCAGCGAAATCATCGTTGATCAGCCGACCGGAAAAATCAACTTCAAGAGCCTTGCCGGCATTACTAAGACTTTTCCAGTTGAGGCATTTGCCGCCGGCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

136

Amino Acids

14.95

Weight (kDa)

9.22

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07840 FvH4_6g24940
malus_domestica	MD05G1301700.v1.1 MD05G1301800.v1.1 MD10G1280600.v1.1 MD10G1280700.v1.1
prunus_persica	Prupe.3G121500_v2.0.a1 Prupe.4G060600_v2.0.a1 Prupe.4G060700_v2.0.a1
pyrus_communis	pycom10g23440
rosa_chinensis	RchiOBHm_Chr2g0129271 RchiOBHm_Chr5g0010731
rosa_laevigata	RLG00000019070 RLG00000031774
rosa_multiflora	Rmu_co8401749.1_g000001 Rmu_sc0005230.1_g000010 Rmu_sc0005230.1_g000011 Rmu_sc0024422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114710
rosa_rugosa	Rorug02G0285900 Rorug04G0451800
rosa_samantha	Rh2AG337800 Rh2BG345600 Rh2CG325200 Rh2DG363100 Rh5AG083600 Rh5BG078800 Rh5CG091600 Rh5DG079000
rosa_wichuraiana	Rw0G000620 Rw0G022320 Rw2G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	151, 164
AcoI	YGGCCR	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	190, 242, 349
AjnI	CCWGG	1 cut(s)	72
AluBI	AGCT	4 cut(s)	186, 205, 262, 286
AluI	AGCT	4 cut(s)	186, 205, 262, 286
Alw21I	GWGCWC	3 cut(s)	143, 183, 288
AlwI	GGATC	2 cut(s)	151, 164
AoxI	GGCC	3 cut(s)	34, 296, 400
ApeKI	GCWGC	1 cut(s)	67
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	156
BanII	GRGCYC	2 cut(s)	99, 288
Bbv12I	GWGCWC	3 cut(s)	143, 183, 288
BbvI	GCAGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	74
BclI	TGATCA	2 cut(s)	195, 322
BfaI	CTAG	1 cut(s)	92
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	68, 396
BlsI	GCNGC	2 cut(s)	69, 397
Bme1390I	CCNGG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	158
BmrFI	CCNGG	1 cut(s)	74
BpmI	CTGGAG	3 cut(s)	56, 146, 285
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	248
BsaWI	WCCGGW	1 cut(s)	332
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	3 cut(s)	143, 359, 398
Bse1I	ACTGG	4 cut(s)	54, 302, 380, 403
BseBI	CCWGG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseNI	ACTGG	4 cut(s)	54, 302, 380, 403
BseRI	GAGGAG	1 cut(s)	151
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	36, 298, 402
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	3 cut(s)	143, 183, 288
BsiSI	CCGG	4 cut(s)	144, 333, 360, 399
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	3 cut(s)	36, 298, 402
Bsp1286I	GDGCHC	4 cut(s)	99, 143, 183, 288
Bsp143I	GATC	5 cut(s)	82, 117, 156, 195, 322
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	3 cut(s)	36, 298, 402
BspLI	GGNNCC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	151, 164
BsrFI	RCCGGY	3 cut(s)	143, 359, 398
BsrI	ACTGG	4 cut(s)	54, 302, 380, 403
BssAI	RCCGGY	3 cut(s)	143, 359, 398
BssMI	GATC	5 cut(s)	82, 117, 156, 195, 322
Bst2UI	CCWGG	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	361, 400
BstDEI	CTNAG	2 cut(s)	279, 369
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	5 cut(s)	85, 120, 159, 198, 325
BstMBI	GATC	5 cut(s)	82, 117, 156, 195, 322
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 395
BstNI	CCWGG	1 cut(s)	74
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	156
BstYI	RGATCY	1 cut(s)	156
BsuRI	GGCC	3 cut(s)	36, 298, 402
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	2 cut(s)	361, 400
CfoI	GCGC	1 cut(s)	67
Cfr10I	RCCGGY	3 cut(s)	143, 359, 398
Cfr13I	GGNCC	1 cut(s)	34
CviAII	CATG	3 cut(s)	38, 151, 289
DdeI	CTNAG	2 cut(s)	279, 369
DpnI	GATC	5 cut(s)	84, 119, 158, 197, 324
DpnII	GATC	5 cut(s)	82, 117, 156, 195, 322
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	99, 288
Eco53kI	GAGCTC	1 cut(s)	286
EcoICRI	GAGCTC	1 cut(s)	286
EcoRII	CCWGG	1 cut(s)	72
EcoT38I	GRGCYC	2 cut(s)	99, 288
FaeI	CATG	3 cut(s)	41, 154, 292
FaiI	YATR	4 cut(s)	39, 152, 216, 290
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	3 cut(s)	37, 150, 288
FbaI	TGATCA	2 cut(s)	195, 322
Fnu4HI	GCNGC	2 cut(s)	68, 396
FriOI	GRGCYC	2 cut(s)	99, 288
Fsp4HI	GCNGC	2 cut(s)	68, 396
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	2 cut(s)	68, 396
GsuI	CTGGAG	3 cut(s)	56, 146, 285
HaeIII	GGCC	3 cut(s)	36, 298, 402
HapII	CCGG	4 cut(s)	144, 333, 360, 399
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	3 cut(s)	41, 154, 292
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	4 cut(s)	144, 333, 360, 399
Hpy188III	TCNNGA	3 cut(s)	28, 163, 349
HpyAV	CCTTC	5 cut(s)	4, 8, 25, 166, 268
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 395
HpyF3I	CTNAG	2 cut(s)	279, 369
Hsp92II	CATG	3 cut(s)	41, 154, 292
HspAI	GCGC	1 cut(s)	65
KroI	GCCGGC	2 cut(s)	359, 398
KroNI	GCCGGC	2 cut(s)	361, 400
Ksp22I	TGATCA	2 cut(s)	195, 322
Kzo9I	GATC	5 cut(s)	82, 117, 156, 195, 322
LmnI	GCTCC	3 cut(s)	75, 138, 283
Lsp1109I	GCAGC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	92
MalI	GATC	5 cut(s)	84, 119, 158, 197, 324
MboI	GATC	5 cut(s)	82, 117, 156, 195, 322
MboII	GAAGA	4 cut(s)	53, 77, 178, 181
MflI	RGATCY	1 cut(s)	156
MhlI	GDGCHC	4 cut(s)	99, 143, 183, 288
MluCI	AATT	4 cut(s)	21, 191, 225, 252
MnlI	CCTC	7 cut(s)	11, 37, 99, 129, 170, 309, 379
MroNI	GCCGGC	2 cut(s)	359, 398
MseI	TTAA	2 cut(s)	228, 255
MspI	CCGG	4 cut(s)	144, 333, 360, 399
MspR9I	CCNGG	1 cut(s)	74
MvaI	CCWGG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	360, 395
NaeI	GCCGGC	2 cut(s)	361, 400
NdeII	GATC	5 cut(s)	82, 117, 156, 195, 322
NgoMIV	GCCGGC	2 cut(s)	359, 398
NlaIII	CATG	3 cut(s)	41, 154, 292
NlaIV	GGNNCC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PdiI	GCCGGC	2 cut(s)	361, 400
PfoI	TCCNGGA	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	69, 397
PscI	ACATGT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	72
PspGI	CCWGG	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	228, 255
SatI	GCNGC	2 cut(s)	68, 396
Sau3AI	GATC	5 cut(s)	82, 117, 156, 195, 322
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	74
SduI	GDGCHC	4 cut(s)	99, 143, 183, 288
SetI	ASST	5 cut(s)	177, 188, 207, 264, 288
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
Sse9I	AATT	4 cut(s)	21, 191, 225, 252
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	1 cut(s)	92
SstI	GAGCTC	1 cut(s)	288
StyD4I	CCNGG	1 cut(s)	72
TaqI	TCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	21, 191, 225, 252
TauI	GCSGC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	228, 255
Tru9I	TTAA	2 cut(s)	228, 255
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	54
TspRI	CASTG	1 cut(s)	226
XceI	RCATGY	1 cut(s)	154
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.