Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004530

Physical Location & Seq

Genomic Coordinates Forward (+)

10803688 .. 10804089

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G121500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCAGAGAAAGAAGGGGGCATAGTTAAGAAAGGCCACGATGAAGGCTTGAAACTGGCAGTCTCTATTCTCCAAAAATTCGAACTCCCTCAAGGAGTTCTTCCCTTGGCCGGTGTGATCGAAGTCGGGTTCGTCGAAAGCACGGGGTACATGTGGATCGTGCAAGAGAAGAAGGTGGAGCACGAGTTCAAACTGATCAGCAAGCTTGTGAGTTATGACACTGAAATCACCGGCTACATTGAGAAGAAGAGGATCAAGAAGCTCAAGGGTGTGAAGGCCAAGGAGCTGGTGCTGTGGCCTCCAGTCAGTGAGATCACAGTTGATGAGCCACCAACTGGGAAGATTCACTTCAAGAGCCTTGCTGGGATCACAAAGACCTTCCCTGTTGAGGCATTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

134

Amino Acids

14.78

Weight (kDa)

8.69

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004530)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07840 FvH4_6g24940
malus_domestica	MD05G1301700.v1.1 MD05G1301800.v1.1 MD10G1280600.v1.1 MD10G1280700.v1.1
prunus_persica	Prupe.3G121500_v2.0.a1 Prupe.4G060600_v2.0.a1 Prupe.4G060700_v2.0.a1
pyrus_communis	pycom10g23440
rosa_chinensis	RchiOBHm_Chr2g0129271 RchiOBHm_Chr5g0010731
rosa_laevigata	RLG00000019070 RLG00000031774
rosa_multiflora	Rmu_co8401749.1_g000001 Rmu_sc0005230.1_g000010 Rmu_sc0005230.1_g000011 Rmu_sc0024422.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114710
rosa_rugosa	Rorug02G0285900 Rorug04G0451800
rosa_samantha	Rh2AG337800 Rh2BG345600 Rh2CG325200 Rh2DG363100 Rh5AG083600 Rh5BG078800 Rh5CG091600 Rh5DG079000
rosa_wichuraiana	Rw0G000620 Rw0G022320 Rw2G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	335
AclWI	GGATC	3 cut(s)	164, 260, 374
AcoI	YGGCCR	1 cut(s)	108
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	1 cut(s)	149
AfiI	CCNNNNNNNGG	3 cut(s)	110, 335, 388
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	3 cut(s)	52, 190, 352
AloI	GAACNNNNNNTCC	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	205, 262, 286
AluI	AGCT	3 cut(s)	205, 262, 286
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	1 cut(s)	67
AlwI	GGATC	3 cut(s)	164, 260, 374
AoxI	GGCC	4 cut(s)	34, 108, 276, 296
ApoI	RAATTY	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	220
AsuII	TTCGAA	1 cut(s)	81
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	67
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	81
BpuEI	CTTGAG	2 cut(s)	75, 248
BsaJI	CCNNGG	2 cut(s)	105, 279
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	3 cut(s)	110, 335, 388
Bse118I	RCCGGY	2 cut(s)	110, 230
Bse1I	ACTGG	3 cut(s)	60, 302, 340
BseDI	CCNNGG	2 cut(s)	105, 279
BseLI	CCNNNNNNNGG	3 cut(s)	110, 335, 388
BseNI	ACTGG	3 cut(s)	60, 302, 340
BseYI	CCCAGC	1 cut(s)	362
BshFI	GGCC	4 cut(s)	36, 110, 278, 298
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	2 cut(s)	111, 231
BslI	CCNNNNNNNGG	3 cut(s)	110, 335, 388
BsmAI	GTCTC	1 cut(s)	67
BsnI	GGCC	4 cut(s)	36, 110, 278, 298
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	183
Bsp143I	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
BspANI	GGCC	4 cut(s)	36, 110, 278, 298
BspPI	GGATC	3 cut(s)	164, 260, 374
BspT104I	TTCGAA	1 cut(s)	81
BsrFI	RCCGGY	2 cut(s)	110, 230
BsrI	ACTGG	3 cut(s)	60, 302, 340
BssAI	RCCGGY	2 cut(s)	110, 230
BssECI	CCNNGG	2 cut(s)	105, 279
BssMI	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	2 cut(s)	105, 279
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	203
BstKTI	GATC	6 cut(s)	120, 159, 198, 255, 315, 369
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
BstNSI	RCATGY	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	36, 110, 278, 298
BtsIMutI	CAGTG	2 cut(s)	219, 313
Cac8I	GCNNGC	1 cut(s)	203
Cfr10I	RCCGGY	2 cut(s)	110, 230
Csp6I	GTAC	1 cut(s)	148
CviAII	CATG	1 cut(s)	151
CviQI	GTAC	1 cut(s)	148
DpnI	GATC	6 cut(s)	119, 158, 197, 254, 314, 368
DpnII	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
EaeI	YGGCCR	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	105, 279
EcoT14I	CCWWGG	2 cut(s)	105, 279
ErhI	CCWWGG	2 cut(s)	105, 279
FaeI	CATG	1 cut(s)	154
FaiI	YATR	3 cut(s)	23, 152, 216
FalI	AAGNNNNNCTT	4 cut(s)	84, 116, 332, 364
FatI	CATG	1 cut(s)	150
FbaI	TGATCA	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	285
HaeIII	GGCC	4 cut(s)	36, 110, 278, 298
HapII	CCGG	2 cut(s)	111, 231
Hin1II	CATG	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	2 cut(s)	111, 231
HphI	GGTGA	1 cut(s)	220
Hpy188III	TCNNGA	2 cut(s)	256, 352
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	5 cut(s)	8, 38, 166, 268, 388
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	1 cut(s)	163
Hsp92II	CATG	1 cut(s)	154
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
LmnI	GCTCC	2 cut(s)	178, 283
LpnPI	CCDG	8 cut(s)	41, 124, 244, 272, 315, 321, 348, 396
MalI	GATC	6 cut(s)	119, 158, 197, 254, 314, 368
MboI	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
MboII	GAAGA	5 cut(s)	92, 181, 256, 259, 352
MhlI	GDGCHC	1 cut(s)	183
MluCI	AATT	1 cut(s)	77
MnlI	CCTC	4 cut(s)	99, 243, 309, 382
MseI	TTAA	2 cut(s)	27, 400
MspI	CCGG	2 cut(s)	111, 231
NdeII	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
NlaIII	CATG	1 cut(s)	154
NspI	RCATGY	1 cut(s)	154
NspV	TTCGAA	1 cut(s)	81
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	335
PscI	ACATGT	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	362
RsaI	GTAC	1 cut(s)	149
RsaNI	GTAC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	27, 400
Sau3AI	GATC	6 cut(s)	117, 156, 195, 252, 312, 366
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	5 cut(s)	177, 207, 264, 288, 380
SfuI	TTCGAA	1 cut(s)	81
SmlI	CTYRAG	2 cut(s)	90, 263
SmoI	CTYRAG	2 cut(s)	90, 263
Sse9I	AATT	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	105, 279
TaaI	ACNGT	1 cut(s)	319
TaqI	TCGA	3 cut(s)	81, 120, 135
TasI	AATT	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	27, 400
Tru9I	TTAA	2 cut(s)	27, 400
TscAI	CASTG	2 cut(s)	226, 313
TspDTI	ATGAA	1 cut(s)	57
TspRI	CASTG	2 cut(s)	226, 313
Van91I	CCANNNNNTGG	1 cut(s)	335
XapI	RAATTY	1 cut(s)	77
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.