FvH4_3g08300

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014688
Physical Location & Seq
Reverse (-)
4852411 .. 4854692
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08300.t1

Sequence Viewer

Length: 1059 bp
ATGTCGATTGGTAGCAATAATACAGGGGAACCTAGCGGCGGCCGCCATGCCTGCGCTGCGTGTCGGCACCAGAGAAAAAGGTGCGAAGAGGACTGTGTTATGGCCCCTTACTTCACGGCGGATAAGGAAGAAGAGTTTAAAGCTGTGCACAAACTTTTCGGCGTGAGCAACATGTCGAAGTTGCTTAAGCAACTAGAGGACCAAAATCACAGGACTCAGGCTGTAGCTTCTTTCGTATGGGAAGCCTATATGTGGAAGCAGGATCCTATTGCCGGCCCTCGAGGCAGGTACAAGGCTTTAGAAGAGGAGTGTGTATATCTCAAAAGCCTATTGAAATCGAACCGGCCGCAACAGGAACCGGTGGGGGTTGTAGACCAAGGAAGTACCAAAGGCGAAGTCGAATTCGAAGGAGGAGGAGTACCCATTTATGGAAGGGGTTTGAATTATGGTTATCCTGATCAAACTTTAGGGTTACATCATGGGTGTACCTCTAGTTTTACTTCTCTACTACAAGGGCAAGACACTGAAAGCAGAAAGGCTCTAGCAGATTGTGTTTCTGTTGCTTCTACTACTTACCCAACGCCTTTGTCCCAAGTGAGAGGGTTTCAAGACCAAAGGAGGAGCGGCATGGAGTCATTCAACTTTTTTCATCAGTACCCAACATTTCAAGGAAGTAATGTCAATCATAACTATAGGCCTATACAAGCTCAAGGAAGAGGGAGAGGAACTGGAGCTGGAGGAATAATGACAGATTGTGCAAGAACCTGTAATGGGCTTGTAGTCTATGACCCTCATACTGGGCAGGTACAAAAAAGAGAAATTGGCGCAATGGTGCCCCAAGTTGGCCCTATTCTTAGTGGCCATAGGAGAAGTACGAATCAAAGATTTTCACCTTATGACCAGCATAACCCTATTCAAGTGCCAAGACAAGCGATGAGGCAGCAAGATCAAAACCAGCAAAACTTTCCAGCACAGCATCAGTGGAATACTAATTGCCAGAATTGCGATAATTTTCAAGATACAGAGCATATCAGTGAAGTGAAGACTGAAAAGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

353

Amino Acids

39.43

Weight (kDa)

7.98

Isoelectric Point (pI)

47.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 17 - 111 1.2e-30 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 279
Acc36I ACCTGC 2 cut(s) 276, 793
AccB1I GGYRCC 2 cut(s) 66, 832
AccBSI CCGCTC 1 cut(s) 624
AccI GTMKAC 1 cut(s) 372
AciI CCGC 6 cut(s) 36, 39, 43, 119, 347, 624
AclWI GGATC 2 cut(s) 257, 270
AcoI YGGCCR 3 cut(s) 40, 344, 859
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 7 cut(s) 290, 385, 420, 487, 656, 807, 874
AfiI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 428, 771, 797, 842
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 171
AgeI ACCGGT 1 cut(s) 358
AgsI TTSAA 7 cut(s) 334, 442, 608, 640, 668, 917, 1016
AluBI AGCT 4 cut(s) 143, 227, 707, 734
AluI AGCT 4 cut(s) 143, 227, 707, 734
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AlwI GGATC 2 cut(s) 257, 270
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 7 cut(s) 40, 102, 274, 344, 695, 844, 859
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 56, 940
ApoI RAATTY 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AsiGI ACCGGT 1 cut(s) 358
AspLEI GCGC 2 cut(s) 56, 827
AspS9I GGNCC 4 cut(s) 103, 199, 275, 845
AsuHPI GGTGA 1 cut(s) 882
AsuII TTCGAA 1 cut(s) 405
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 2 cut(s) 150, 837
BalI TGGCCA 1 cut(s) 861
BamHI GGATCC 1 cut(s) 262
BanI GGYRCC 2 cut(s) 66, 832
BbsI GAAGAC 1 cut(s) 1049
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 43, 952
BceAI ACGGC 1 cut(s) 132
BclI TGATCA 1 cut(s) 457
BfaI CTAG 4 cut(s) 33, 194, 492, 542
BfmI CTRYAG 2 cut(s) 222, 691
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 276, 793
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 7 cut(s) 37, 40, 43, 57, 347, 625, 941
BlsI GCNGC 7 cut(s) 38, 41, 44, 58, 348, 626, 942
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 4 cut(s) 103, 199, 275, 845
BmiI GGNNCC 6 cut(s) 30, 68, 105, 264, 357, 834
BmrI ACTGGG 1 cut(s) 807
BmsI GCATC 1 cut(s) 985
BmuI ACTGGG 1 cut(s) 807
BpiI GAAGAC 1 cut(s) 1049
BpmI CTGGAG 2 cut(s) 750, 756
Bpu14I TTCGAA 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 693
BsaJI CCNNGG 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 252, 272, 428, 771, 797, 842
Bse118I RCCGGY 3 cut(s) 272, 342, 358
Bse1I ACTGG 2 cut(s) 733, 802
Bse3DI GCAATG 1 cut(s) 834
BseDI CCNNGG 1 cut(s) 376
BseLI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 428, 771, 797, 842
BseMI GCAATG 1 cut(s) 834
BseMII CTCAG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 733, 802
BseRI GAGGAG 4 cut(s) 320, 426, 429, 634
BseSI GKGCMC 2 cut(s) 150, 837
BseX3I CGGCCG 2 cut(s) 40, 344
BseXI GCAGC 2 cut(s) 43, 952
Bsh1285I CGRYCG 2 cut(s) 43, 347
BshFI GGCC 7 cut(s) 42, 104, 276, 346, 697, 846, 861
BshNI GGYRCC 2 cut(s) 66, 832
BshTI ACCGGT 1 cut(s) 358
BsiEI CGRYCG 2 cut(s) 43, 347
BsiHKAI GWGCWC 1 cut(s) 150
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 3 cut(s) 273, 343, 359
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 428, 771, 797, 842
BsmFI GGGAC 1 cut(s) 574
BsnI GGCC 7 cut(s) 42, 104, 276, 346, 697, 846, 861
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 150, 837
Bsp143I GATC 3 cut(s) 262, 457, 946
BspACI CCGC 6 cut(s) 36, 39, 43, 119, 347, 624
BspANI GGCC 7 cut(s) 42, 104, 276, 346, 697, 846, 861
BspCNI CTCAG 1 cut(s) 229
BspLI GGNNCC 6 cut(s) 30, 68, 105, 264, 357, 834
BspMI ACCTGC 2 cut(s) 276, 793
BspPI GGATC 2 cut(s) 257, 270
BspT104I TTCGAA 1 cut(s) 405
BspT107I GGYRCC 2 cut(s) 66, 832
BspTI CTTAAG 1 cut(s) 185
BsrBI CCGCTC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 834
BsrFI RCCGGY 3 cut(s) 272, 342, 358
BsrI ACTGG 2 cut(s) 733, 802
BssAI RCCGGY 3 cut(s) 272, 342, 358
BssECI CCNNGG 1 cut(s) 376
BssMI GATC 3 cut(s) 262, 457, 946
BssT1I CCWWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 95
Bst6I CTCTTC 4 cut(s) 81, 126, 297, 709
BstAFI CTTAAG 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 2 cut(s) 52, 274
BstDEI CTNAG 2 cut(s) 216, 854
BstHHI GCGC 2 cut(s) 56, 827
BstKTI GATC 3 cut(s) 265, 460, 949
BstMBI GATC 3 cut(s) 262, 457, 946
BstMCI CGRYCG 2 cut(s) 43, 347
BstMWI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 1002
BstNSI RCATGY 1 cut(s) 175
BstSFI CTRYAG 2 cut(s) 222, 691
BstSLI GKGCMC 2 cut(s) 150, 837
BstV1I GCAGC 2 cut(s) 43, 952
BstV2I GAAGAC 1 cut(s) 1049
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BstZI CGGCCG 2 cut(s) 40, 344
BsuRI GGCC 7 cut(s) 42, 104, 276, 346, 697, 846, 861
BtgZI GCGATG 1 cut(s) 947
BtsIMutI CAGTG 3 cut(s) 522, 986, 1039
BveI ACCTGC 2 cut(s) 276, 793
Cac8I GCNNGC 2 cut(s) 52, 274
CciNI GCGGCCGC 1 cut(s) 40
CfoI GCGC 2 cut(s) 56, 827
Cfr10I RCCGGY 3 cut(s) 272, 342, 358
Cfr13I GGNCC 4 cut(s) 103, 199, 275, 845
Csp6I GTAC 7 cut(s) 289, 384, 419, 486, 655, 806, 873
CspAI ACCGGT 1 cut(s) 358
CviAII CATG 4 cut(s) 47, 172, 479, 628
CviQI GTAC 7 cut(s) 289, 384, 419, 486, 655, 806, 873
DdeI CTNAG 2 cut(s) 216, 854
DpnI GATC 3 cut(s) 264, 459, 948
DpnII GATC 3 cut(s) 262, 457, 946
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 3 cut(s) 40, 344, 859
EagI CGGCCG 2 cut(s) 40, 344
Eam1104I CTCTTC 4 cut(s) 81, 126, 297, 709
EarI CTCTTC 4 cut(s) 81, 126, 297, 709
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 2 cut(s) 40, 344
Eco130I CCWWGG 1 cut(s) 376
Eco147I AGGCCT 1 cut(s) 697
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 2 cut(s) 40, 344
Eco88I CYCGRG 1 cut(s) 279
EcoRI GAATTC 1 cut(s) 401
EcoT14I CCWWGG 1 cut(s) 376
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 4 cut(s) 50, 175, 482, 631
FaqI GGGAC 1 cut(s) 574
FatI CATG 4 cut(s) 46, 171, 478, 627
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 372
Fnu4HI GCNGC 7 cut(s) 37, 40, 43, 57, 347, 625, 941
Fsp4HI GCNGC 7 cut(s) 37, 40, 43, 57, 347, 625, 941
FspBI CTAG 4 cut(s) 33, 194, 492, 542
GlaI GCGC 2 cut(s) 55, 826
GluI GCNGC 7 cut(s) 37, 40, 43, 57, 347, 625, 941
GsuI CTGGAG 2 cut(s) 750, 756
HaeIII GGCC 7 cut(s) 42, 104, 276, 346, 697, 846, 861
HapII CCGG 3 cut(s) 273, 343, 359
HhaI GCGC 2 cut(s) 56, 827
Hin1II CATG 4 cut(s) 50, 175, 482, 631
Hin6I GCGC 2 cut(s) 54, 825
HinP1I GCGC 2 cut(s) 54, 825
HinfI GANTC 3 cut(s) 214, 632, 877
HpaII CCGG 3 cut(s) 273, 343, 359
HphI GGTGA 1 cut(s) 882
Hpy166II GTNNAC 3 cut(s) 148, 373, 486
Hpy188III TCNNGA 3 cut(s) 455, 608, 1016
Hpy8I GTNNAC 3 cut(s) 148, 373, 486
HpyAV CCTTC 2 cut(s) 401, 426
HpyCH4III ACNGT 1 cut(s) 95
HpyCH4V TGCA 2 cut(s) 148, 758
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 1002
HpyF3I CTNAG 2 cut(s) 216, 854
Hsp92II CATG 4 cut(s) 50, 175, 482, 631
HspAI GCGC 2 cut(s) 54, 825
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 3 cut(s) 262, 457, 946
LmnI GCTCC 2 cut(s) 621, 731
Lsp1109I GCAGC 2 cut(s) 43, 952
LweI GCATC 1 cut(s) 985
MaeI CTAG 4 cut(s) 33, 194, 492, 542
MaeIII GTNAC 1 cut(s) 471
MalI GATC 3 cut(s) 264, 459, 948
MbiI CCGCTC 1 cut(s) 624
MboI GATC 3 cut(s) 262, 457, 946
MboII GAAGA 6 cut(s) 98, 140, 143, 314, 726, 1054
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 2 cut(s) 150, 837
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 6 cut(s) 401, 442, 819, 991, 1000, 1009
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 2 cut(s) 208, 641
Mox20I TGGCCA 1 cut(s) 861
MroNI GCCGGC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 861
MseI TTAA 2 cut(s) 138, 186
MslI CAYNNNNRTG 1 cut(s) 1032
Msp20I TGGCCA 1 cut(s) 861
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 273, 343, 359
MwoI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 1002
NaeI GCCGGC 1 cut(s) 274
NdeII GATC 3 cut(s) 262, 457, 946
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 4 cut(s) 50, 175, 482, 631
NlaIV GGNNCC 6 cut(s) 30, 68, 105, 264, 357, 834
NotI GCGGCCGC 1 cut(s) 40
NspI RCATGY 1 cut(s) 175
NspV TTCGAA 1 cut(s) 405
PaeR7I CTCGAG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 697
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 877
PinAI ACCGGT 1 cut(s) 358
PkrI GCNGC 7 cut(s) 38, 41, 44, 58, 348, 626, 942
PleI GAGTC 2 cut(s) 208, 640
PpsI GAGTC 2 cut(s) 208, 640
PscI ACATGT 1 cut(s) 171
PspN4I GGNNCC 6 cut(s) 30, 68, 105, 264, 357, 834
PspPI GGNCC 4 cut(s) 103, 199, 275, 845
PspXI VCTCGAGB 1 cut(s) 279
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 7 cut(s) 290, 385, 420, 487, 656, 807, 874
RsaNI GTAC 7 cut(s) 289, 384, 419, 486, 655, 806, 873
RseI CAYNNNNRTG 1 cut(s) 1032
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 7 cut(s) 37, 40, 43, 57, 347, 625, 941
Sau3AI GATC 3 cut(s) 262, 457, 946
Sau96I GGNCC 4 cut(s) 103, 199, 275, 845
SchI GAGTC 2 cut(s) 208, 641
SduI GDGCHC 2 cut(s) 150, 837
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 2 cut(s) 222, 691
Sfr274I CTCGAG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 3 cut(s) 185, 279, 708
SmoI CTYRAG 3 cut(s) 185, 279, 708
Sse9I AATT 6 cut(s) 401, 442, 819, 991, 1000, 1009
SseBI AGGCCT 1 cut(s) 697
SsiI CCGC 6 cut(s) 36, 39, 43, 119, 347, 624
SspMI CTAG 4 cut(s) 33, 194, 492, 542
StuI AGGCCT 1 cut(s) 697
StyI CCWWGG 1 cut(s) 376
TaaI ACNGT 1 cut(s) 95
TaqI TCGA 6 cut(s) 5, 176, 280, 338, 399, 405
TasI AATT 6 cut(s) 401, 442, 819, 991, 1000, 1009
TauI GCSGC 5 cut(s) 39, 42, 45, 349, 627
TfiI GAWTC 1 cut(s) 877
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 3 cut(s) 529, 986, 1039
TseI GCWGC 2 cut(s) 56, 940
TspDTI ATGAA 1 cut(s) 638
TspRI CASTG 3 cut(s) 529, 986, 1039
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 401
XceI RCATGY 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 372
XspI CTAG 4 cut(s) 33, 194, 492, 542
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.