MD05G1307000.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0014688
Physical Location & Seq
Reverse (-)
43882705 .. 43883862
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1307000.v1.1.491

Sequence Viewer

Length: 1158 bp
ATGTCAATGGGTAGCAGTAGTTCTGCAGGGGAACTAATTGCATGCCGCCATGCATGTGCGGCGTGCCGGCACCAAAGGAAGAGGTGCGAAGACGATTGCGTTATGGCTCCTTACTTCACAAACAAGGATGAAGATTTTAAAGCAGCGCACAAAATTTTTGGCGTTAGCAACATGACAAAGTTGCTTAAGCAACTAGATGACCAAAATCATAGGGGCACAGCCGTACAATCTTTCATGTGGGAAGCCTATATATGGAAGCAAGACCCTGTGAACGGACCCCTAGGGATGTACAGAAAATTGGAGAGAGAGAATGAACTGCTTAGGAACGCATTGAATGAAGAACAAAAGGCTCTGGCTTTGGCTTTTGCTGCATCCACAATGGAGGAGGAGCCACTAGCTTTGGACCAAGAGAACCATAGCAATAGTGGCAATATCAATGATGATGTGGAAGGAGTGATACCTATATATGGAAATGCCCGGAATTATGGTTATGCTAATCAAAGTTTAGCAATTGATGGGTCTACTAATGGCACTTATACTAAATTATTACAAGGGCAAGAGGCCACTGAAATGTCACAGGAGCAACAAGTATTAGGGCAAGGGAGAGGCTTTCATCATGGAGCTGCATTGGCCAAGCAACAAGCACGAGACCAACAAGGAGTCGTTGGCCTCGATTCTTCTGCAGGACAGTTTGGGATGGTCGGCTTGATGTCCACCCTTCAGTCCCAAAGGCCTATGCAATTTGAAGGACGCCCTGATATAGGACCTTATATGTATGGGCAAGGAAGAGGTCAAGTGGTTTTTGACCCTTCTGTTGGGCAAGGACAGCAAAGAGCATTAGGCTCAGCCGGGGCAGCTCAAATTGGCCCACATTTTGGAGATTTTTCTTTACTGGGCCACACGAGATCAGCTATTACTCAAAGCCCTTATTCACCTTATCACCACCAACAACCGCATCATCCTGTGCACGCGCAGAGACTGGTGATGAGCCAAGGGCAAAATCACCCTAACTTTCAACAATACAGCTCGTTGAACAATTGCCACAATTACGACAACGTTCAAGGTAAATATCATACAATAATTGCATTCTCCTTCCATCTTCTTGTTCAAAGATTGATTTTGTATGATAATTATGGGCATATGTACATAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

386

Amino Acids

42.74

Weight (kDa)

6.33

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 18 - 114 3.1e-30 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 69
AccB7I CCANNNNNTGG 1 cut(s) 875
AccI GTMKAC 1 cut(s) 521
AccII CGCG 1 cut(s) 971
AciI CCGC 3 cut(s) 46, 59, 953
AclI AACGTT 1 cut(s) 1056
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 1 cut(s) 153
AcuI CTGAAG 1 cut(s) 704
AcyI GRCGYC 1 cut(s) 751
AfaI GTAC 3 cut(s) 225, 290, 1145
AfiI CCNNNNNNNGG 6 cut(s) 252, 272, 467, 761, 815, 875
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 6 cut(s) 334, 746, 1016, 1033, 1061, 1109
AluBI AGCT 5 cut(s) 398, 623, 857, 911, 1026
AluI AGCT 5 cut(s) 398, 623, 857, 911, 1026
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 2 cut(s) 642, 970
Alw44I GTGCAC 1 cut(s) 965
AlwNI CAGNNNCTG 1 cut(s) 979
AoxI GGCC 6 cut(s) 561, 630, 667, 731, 865, 895
ApaLI GTGCAC 1 cut(s) 965
ApeKI GCWGC 4 cut(s) 143, 368, 623, 854
ApoI RAATTY 1 cut(s) 153
AspA2I CCTAGG 1 cut(s) 280
AspLEI GCGC 2 cut(s) 148, 973
AspS9I GGNCC 5 cut(s) 275, 403, 764, 866, 895
AsuC2I CCSGG 2 cut(s) 478, 850
AsuHPI GGTGA 4 cut(s) 924, 932, 994, 995
AvaII GGWCC 3 cut(s) 275, 403, 764
AvrII CCTAGG 1 cut(s) 280
BaeGI GKGCMC 2 cut(s) 218, 969
BalI TGGCCA 1 cut(s) 632
BanI GGYRCC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
BauI CACGAG 2 cut(s) 645, 901
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 969
BbvI GCAGC 4 cut(s) 155, 355, 610, 866
BccI CCATC 3 cut(s) 509, 691, 1104
BceAI ACGGC 1 cut(s) 206
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BcnI CCSGG 2 cut(s) 478, 850
BcoDI GTCTC 2 cut(s) 642, 970
BfaI CTAG 3 cut(s) 194, 281, 395
BfmI CTRYAG 2 cut(s) 24, 681
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 6 cut(s) 46, 60, 144, 369, 624, 855
BlnI CCTAGG 1 cut(s) 280
BlpI GCTNAGC 1 cut(s) 844
BlsI GCNGC 6 cut(s) 47, 61, 145, 370, 625, 856
Bme1390I CCNGG 2 cut(s) 478, 850
Bme18I GGWCC 3 cut(s) 275, 403, 764
BmgT120I GGNCC 5 cut(s) 275, 403, 764, 866, 895
BmiI GGNNCC 4 cut(s) 71, 108, 277, 390
BmrFI CCNGG 2 cut(s) 478, 850
BmrI ACTGGG 1 cut(s) 902
BmsI GCATC 2 cut(s) 380, 964
BmuI ACTGGG 1 cut(s) 902
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 320
Bpu1102I GCTNAGC 1 cut(s) 844
BpuMI CCSGG 2 cut(s) 478, 850
BsaHI GRCGYC 1 cut(s) 751
BsaI GGTCTC 1 cut(s) 642
BsaJI CCNNGG 3 cut(s) 280, 849, 991
Bsc4I CCNNNNNNNGG 6 cut(s) 252, 272, 467, 761, 815, 875
Bse118I RCCGGY 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 897, 984
BseDI CCNNGG 3 cut(s) 280, 849, 991
BseGI GGATG 5 cut(s) 133, 291, 371, 702, 958
BseLI CCNNNNNNNGG 6 cut(s) 252, 272, 467, 761, 815, 875
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 2 cut(s) 897, 984
BseRI GAGGAG 2 cut(s) 398, 401
BseSI GKGCMC 2 cut(s) 218, 969
BseXI GCAGC 4 cut(s) 155, 355, 610, 866
Bsh1236I CGCG 1 cut(s) 971
BshFI GGCC 6 cut(s) 563, 632, 669, 733, 867, 897
BshNI GGYRCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 969
BsiSI CCGG 3 cut(s) 67, 478, 849
BslFI GGGAC 1 cut(s) 709
BslI CCNNNNNNNGG 6 cut(s) 252, 272, 467, 761, 815, 875
BsmAI GTCTC 2 cut(s) 642, 970
BsmFI GGGAC 1 cut(s) 709
BsmI GAATGC 1 cut(s) 1085
BsnI GGCC 6 cut(s) 563, 632, 669, 733, 867, 897
Bso31I GGTCTC 1 cut(s) 642
Bsp1286I GDGCHC 2 cut(s) 218, 969
Bsp1407I TGTACA 2 cut(s) 288, 1143
Bsp143I GATC 1 cut(s) 905
Bsp1720I GCTNAGC 1 cut(s) 844
BspACI CCGC 3 cut(s) 46, 59, 953
BspANI GGCC 6 cut(s) 563, 632, 669, 733, 867, 897
BspCNI CTCAG 1 cut(s) 857
BspFNI CGCG 1 cut(s) 971
BspLI GGNNCC 4 cut(s) 71, 108, 277, 390
BspMAI CTGCAG 2 cut(s) 28, 685
BspT107I GGYRCC 1 cut(s) 69
BspTI CTTAAG 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 642
BsrFI RCCGGY 1 cut(s) 66
BsrGI TGTACA 2 cut(s) 288, 1143
BsrI ACTGG 2 cut(s) 897, 984
BssAI RCCGGY 1 cut(s) 66
BssECI CCNNGG 3 cut(s) 280, 849, 991
BssMI GATC 1 cut(s) 905
BssNI GRCGYC 1 cut(s) 751
BssSI CACGAG 2 cut(s) 645, 901
BssT1I CCWWGG 2 cut(s) 280, 991
Bst2BI CACGAG 2 cut(s) 645, 901
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 2 cut(s) 74, 781
BstACI GRCGYC 1 cut(s) 751
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 2 cut(s) 288, 1143
BstC8I GCNNGC 4 cut(s) 43, 64, 68, 969
BstDEI CTNAG 2 cut(s) 320, 844
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 5 cut(s) 133, 291, 371, 702, 958
BstFNI CGCG 1 cut(s) 971
BstHHI GCGC 2 cut(s) 148, 973
BstKTI GATC 1 cut(s) 908
BstMAI GTCTC 2 cut(s) 642, 970
BstMBI GATC 1 cut(s) 905
BstMWI GCNNNNNNNGC 6 cut(s) 59, 368, 426, 629, 826, 854
BstNSI RCATGY 2 cut(s) 45, 57
BstSCI CCNGG 2 cut(s) 476, 848
BstSFI CTRYAG 2 cut(s) 24, 681
BstSLI GKGCMC 2 cut(s) 218, 969
BstUI CGCG 1 cut(s) 971
BstV1I GCAGC 4 cut(s) 155, 355, 610, 866
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 6 cut(s) 563, 632, 669, 733, 867, 897
BtsCI GGATG 5 cut(s) 133, 291, 371, 702, 958
BtsIMutI CAGTG 1 cut(s) 564
Cac8I GCNNGC 4 cut(s) 43, 64, 68, 969
CaiI CAGNNNCTG 1 cut(s) 979
CfoI GCGC 2 cut(s) 148, 973
Cfr10I RCCGGY 1 cut(s) 66
Cfr13I GGNCC 5 cut(s) 275, 403, 764, 866, 895
CseI GACGC 1 cut(s) 759
Csp6I GTAC 3 cut(s) 224, 289, 1144
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 6 cut(s) 42, 50, 54, 172, 235, 617
CviQI GTAC 3 cut(s) 224, 289, 1144
DdeI CTNAG 2 cut(s) 320, 844
DpnI GATC 1 cut(s) 907
DpnII GATC 1 cut(s) 905
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 74, 781
EarI CTCTTC 2 cut(s) 74, 781
Eco130I CCWWGG 2 cut(s) 280, 991
Eco147I AGGCCT 1 cut(s) 733
Eco31I GGTCTC 1 cut(s) 642
Eco47I GGWCC 3 cut(s) 275, 403, 764
Eco57I CTGAAG 1 cut(s) 704
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 280, 991
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 280, 991
FaeI CATG 6 cut(s) 45, 53, 57, 175, 238, 620
FaqI GGGAC 1 cut(s) 709
FatI CATG 6 cut(s) 41, 49, 53, 171, 234, 616
FauNDI CATATG 1 cut(s) 1140
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 46, 60, 144, 369, 624, 855
FokI GGATG 5 cut(s) 140, 298, 358, 709, 945
Fsp4HI GCNGC 6 cut(s) 46, 60, 144, 369, 624, 855
FspBI CTAG 3 cut(s) 194, 281, 395
GlaI GCGC 2 cut(s) 147, 972
GluI GCNGC 6 cut(s) 46, 60, 144, 369, 624, 855
HaeIII GGCC 6 cut(s) 563, 632, 669, 733, 867, 897
HapII CCGG 3 cut(s) 67, 478, 849
HgaI GACGC 1 cut(s) 759
HhaI GCGC 2 cut(s) 148, 973
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 6 cut(s) 45, 53, 57, 175, 238, 620
Hin6I GCGC 2 cut(s) 146, 971
HinP1I GCGC 2 cut(s) 146, 971
HinfI GANTC 2 cut(s) 660, 674
HpaII CCGG 3 cut(s) 67, 478, 849
HphI GGTGA 4 cut(s) 924, 932, 994, 995
Hpy166II GTNNAC 4 cut(s) 271, 522, 714, 967
Hpy8I GTNNAC 4 cut(s) 271, 522, 714, 967
HpyAV CCTTC 5 cut(s) 443, 728, 740, 819, 1102
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4IV ACGT 1 cut(s) 1056
HpyCH4V TGCA 9 cut(s) 26, 41, 53, 371, 626, 683, 739, 967, 1085
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 368, 426, 629, 826, 854
HpyF3I CTNAG 2 cut(s) 320, 844
HpySE526I ACGT 1 cut(s) 1056
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 6 cut(s) 45, 53, 57, 175, 238, 620
HspAI GCGC 2 cut(s) 146, 971
KroI GCCGGC 1 cut(s) 66
KroNI GCCGGC 1 cut(s) 68
Kzo9I GATC 1 cut(s) 905
LmnI GCTCC 4 cut(s) 112, 388, 580, 620
Lsp1109I GCAGC 4 cut(s) 155, 355, 610, 866
LweI GCATC 2 cut(s) 380, 964
MaeI CTAG 3 cut(s) 194, 281, 395
MaeII ACGT 1 cut(s) 1056
MaeIII GTNAC 1 cut(s) 573
MalI GATC 1 cut(s) 907
MboI GATC 1 cut(s) 905
MboII GAAGA 7 cut(s) 91, 101, 143, 350, 669, 798, 1091
MfeI CAATTG 2 cut(s) 510, 1036
MhlI GDGCHC 2 cut(s) 218, 969
MlsI TGGCCA 1 cut(s) 632
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 1 cut(s) 669
MnlI CCTC 7 cut(s) 75, 376, 379, 553, 599, 680, 782
Mox20I TGGCCA 1 cut(s) 632
Mph1103I ATGCAT 1 cut(s) 55
MroNI GCCGGC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 632
MseI TTAA 3 cut(s) 138, 186, 1156
MslI CAYNNNNRTG 2 cut(s) 54, 569
Msp20I TGGCCA 1 cut(s) 632
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 67, 478, 849
MspR9I CCNGG 2 cut(s) 478, 850
MunI CAATTG 2 cut(s) 510, 1036
Mva1269I GAATGC 1 cut(s) 1085
MvnI CGCG 1 cut(s) 971
MwoI GCNNNNNNNGC 6 cut(s) 59, 368, 426, 629, 826, 854
NaeI GCCGGC 1 cut(s) 68
NciI CCSGG 2 cut(s) 478, 850
NdeI CATATG 1 cut(s) 1140
NdeII GATC 1 cut(s) 905
NgoMIV GCCGGC 1 cut(s) 66
NlaIII CATG 6 cut(s) 45, 53, 57, 175, 238, 620
NlaIV GGNNCC 4 cut(s) 71, 108, 277, 390
NmuCI GTSAC 1 cut(s) 573
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 2 cut(s) 45, 57
PaeI GCATGC 1 cut(s) 45
PceI AGGCCT 1 cut(s) 733
PcsI WCGNNNNNNNCGW 1 cut(s) 669
PctI GAATGC 1 cut(s) 1085
PdiI GCCGGC 1 cut(s) 68
PfeI GAWTC 1 cut(s) 674
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 6 cut(s) 47, 61, 145, 370, 625, 856
PleI GAGTC 1 cut(s) 668
PpsI GAGTC 1 cut(s) 668
PpuMI RGGWCCY 1 cut(s) 764
Psp1406I AACGTT 1 cut(s) 1056
Psp5II RGGWCCY 1 cut(s) 764
PspN4I GGNNCC 4 cut(s) 71, 108, 277, 390
PspPI GGNCC 5 cut(s) 275, 403, 764, 866, 895
PspPPI RGGWCCY 1 cut(s) 764
PsrI GAACNNNNNNTAC 1 cut(s) 36
PstI CTGCAG 2 cut(s) 28, 685
PstNI CAGNNNCTG 1 cut(s) 979
RsaI GTAC 3 cut(s) 225, 290, 1145
RsaNI GTAC 3 cut(s) 224, 289, 1144
RseI CAYNNNNRTG 2 cut(s) 54, 569
SaqAI TTAA 3 cut(s) 138, 186, 1156
SatI GCNGC 6 cut(s) 46, 60, 144, 369, 624, 855
Sau3AI GATC 1 cut(s) 905
Sau96I GGNCC 5 cut(s) 275, 403, 764, 866, 895
SchI GAGTC 1 cut(s) 669
ScrFI CCNGG 2 cut(s) 478, 850
SduI GDGCHC 2 cut(s) 218, 969
SfaNI GCATC 2 cut(s) 380, 964
SfcI CTRYAG 2 cut(s) 24, 681
SinI GGWCC 3 cut(s) 275, 403, 764
SmiMI CAYNNNNRTG 2 cut(s) 54, 569
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 45
SseBI AGGCCT 1 cut(s) 733
SsiI CCGC 3 cut(s) 46, 59, 953
SspMI CTAG 3 cut(s) 194, 281, 395
StuI AGGCCT 1 cut(s) 733
StyD4I CCNGG 2 cut(s) 476, 848
StyI CCWWGG 2 cut(s) 280, 991
TaaI ACNGT 1 cut(s) 690
TaiI ACGT 1 cut(s) 1059
TaqI TCGA 1 cut(s) 672
TatI WGTACW 2 cut(s) 288, 1143
TauI GCSGC 2 cut(s) 48, 62
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 3 cut(s) 138, 186, 1156
Tru9I TTAA 3 cut(s) 138, 186, 1156
TscAI CASTG 1 cut(s) 571
TseFI GTSAC 1 cut(s) 573
TseI GCWGC 4 cut(s) 143, 368, 623, 854
Tsp45I GTSAC 1 cut(s) 573
TspDTI ATGAA 5 cut(s) 144, 223, 327, 351, 602
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 571
Van91I CCANNNNNTGG 1 cut(s) 875
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 965
VpaK11BI GGWCC 3 cut(s) 275, 403, 764
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 1 cut(s) 153
XceI RCATGY 2 cut(s) 45, 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 422
XmaJI CCTAGG 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 521
XspI CTAG 3 cut(s) 194, 281, 395
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.