RchiOBHm_Chr5g0009701

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0014688
Physical Location & Seq
Forward (+)
6422100 .. 6423239
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29056

Sequence Viewer

Length: 1140 bp
ATGTCGATTGGTAGCAGTAATACTGGGGAACCTAGCGGGGGTCGCCATGCCTGCGCTGCGTGTCGGCACCAGAGAAAAAGGTGCGAAGAAGACTGTGTGATGGCCCCTTACTTCACGGCGGATAAGGAAGAAGAGTTTAAAGCTGTGCACAAACTTTTCGGCGTGAGCAACATGTCAAAATTGCTTAAGCAGCTAGAGGACCAAAATCATAGGGCTCAGGCCGTACAGTCTTTCATATGGGAAGCCTATATGTGGAAGCAGGACCCCATTGCCGGCCCTCTAGGCAAGTACAAGGCTCTTGAAGAGGAGTGTGAATATCTCAGAAACCTACTGAATTCAAGCCGGCCGGAACAGGAATCCATGGGGGTTGTTTACCAAGGAAATACCAAAGGCGAAGTCGAAGGAGGAGGAGTACCCATTTATGGAAGGGGTCTGAATTATGGTTATACTGATCAAACTTTAGGGTTAGATCATGGGTGTACGACTAGTTTTACTTCTCTACTACAAGGGCAAGACACTGAAAGCAGCAAGGGTTTAGCAGATTGTGTTTCTGTGGCTTCTGCTTATCAAATGCCTATTTCCCAATCCCAAGGGAGAGGCTTTCAAGACCATAGAAGAATTGGCATGGAGTCATTCAACTTTTTTCATCAGTACCCAACAGTTCAAGGAGCTAATGTCCATAATTATAGGCCTGTACAAGTACAAGGAAGAGGGAGAGGAACTGGAGGAATAATGATAGATTGTGCAAGAACCTGCAACGGGCTTGTAGTTTATGACCCTCATACCGGGCAGGTACAACAAAGAGAAATAGGGGCAATGGGGCCCCAAGTTGGTCCTATTCTTAGTAGCCATAGGAGAGGTACGAGTCAAAGATTTTCACCTTATGACCAGCATAACCCTATTCAAGTGCCAAGACAAGCGATGAGGCAGCAAGATCAAAACCAGCAAAGTTTTCCAGCACAACATCAGTGGGATACTAATAGCCAGAGTTGCGACAATTTTCAAGGTAAAGGACATAAAATTTCATTCTTTCTCTTTGTGTTTGACACGGCATTTGGCAAGGTATTATTGTTGATATATTGTTATTGTGGTCTACTGCACAAGTACTGTGATAGAGTGATAAAAAAGACTACTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

379

Amino Acids

42.46

Weight (kDa)

8.17

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 17 - 112 8.6e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 761, 781
AccB1I GGYRCC 1 cut(s) 66
AccI GTMKAC 1 cut(s) 1093
AciI CCGC 2 cut(s) 36, 119
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 2 cut(s) 334, 1020
AfiI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 7 cut(s) 302, 339, 605, 637, 665, 905, 1004
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 3 cut(s) 143, 193, 671
AluI AGCT 3 cut(s) 143, 193, 671
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 6 cut(s) 102, 219, 274, 344, 689, 821
ApaI GGGCCC 1 cut(s) 825
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 4 cut(s) 56, 190, 525, 928
ApoI RAATTY 2 cut(s) 334, 1020
ArsI GACNNNNNNTTYG 4 cut(s) 381, 413, 1037, 1069
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
AsuC2I CCSGG 1 cut(s) 787
AsuHPI GGTGA 1 cut(s) 870
AvaII GGWCC 3 cut(s) 199, 262, 833
BaeGI GKGCMC 2 cut(s) 150, 825
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 217, 825
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 4 cut(s) 43, 202, 537, 940
BccI CCATC 1 cut(s) 94
BceAI ACGGC 3 cut(s) 132, 206, 1065
BciVI GTATCC 1 cut(s) 967
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 787
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 33, 194, 281, 486
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 761, 781
BfuI GTATCC 1 cut(s) 967
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 4 cut(s) 57, 191, 526, 929
BlsI GCNGC 4 cut(s) 58, 192, 527, 930
BmcAI AGTACT 1 cut(s) 1106
Bme1390I CCNGG 1 cut(s) 787
Bme18I GGWCC 3 cut(s) 199, 262, 833
BmgT120I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
BmiI GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
BmrFI CCNGG 1 cut(s) 787
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 787
BsaJI CCNNGG 3 cut(s) 360, 376, 589
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 660, 690
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
Bse118I RCCGGY 2 cut(s) 272, 342
Bse1I ACTGG 2 cut(s) 28, 727
Bse3DI GCAATG 2 cut(s) 267, 822
BseDI CCNNGG 3 cut(s) 360, 376, 589
BseLI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
BseMI GCAATG 2 cut(s) 267, 822
BseMII CTCAG 2 cut(s) 230, 334
BseNI ACTGG 2 cut(s) 28, 727
BseRI GAGGAG 3 cut(s) 320, 420, 423
BseSI GKGCMC 2 cut(s) 150, 825
BseX3I CGGCCG 1 cut(s) 344
BseXI GCAGC 4 cut(s) 43, 202, 537, 940
BsgI GTGCAG 1 cut(s) 1082
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 4 cut(s) 273, 343, 347, 786
BslI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
BsnI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
Bsp120I GGGCCC 1 cut(s) 821
Bsp1286I GDGCHC 3 cut(s) 150, 217, 825
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 3 cut(s) 451, 469, 934
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 36, 119
BspANI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BspCNI CTCAG 2 cut(s) 229, 333
BspLI GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
BspMI ACCTGC 2 cut(s) 761, 781
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 2 cut(s) 267, 822
BsrFI RCCGGY 2 cut(s) 272, 342
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 2 cut(s) 28, 727
BssAI RCCGGY 2 cut(s) 272, 342
BssECI CCNNGG 3 cut(s) 360, 376, 589
BssMI GATC 3 cut(s) 451, 469, 934
BssT1I CCWWGG 3 cut(s) 360, 376, 589
Bst4CI ACNGT 4 cut(s) 95, 228, 661, 1109
Bst6I CTCTTC 3 cut(s) 126, 297, 703
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 694
BstC8I GCNNGC 3 cut(s) 52, 274, 344
BstDEI CTNAG 3 cut(s) 216, 320, 842
BstDSI CCRYGG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 454, 472, 937
BstMBI GATC 3 cut(s) 451, 469, 934
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 6 cut(s) 42, 51, 56, 190, 282, 990
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 785
BstSLI GKGCMC 2 cut(s) 150, 825
BstV1I GCAGC 4 cut(s) 43, 202, 537, 940
BstV2I GAAGAC 1 cut(s) 96
BstZI CGGCCG 1 cut(s) 344
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 935
BtsIMutI CAGTG 2 cut(s) 516, 974
BveI ACCTGC 2 cut(s) 761, 781
Cac8I GCNNGC 3 cut(s) 52, 274, 344
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 272, 342
Cfr13I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 5 cut(s) 47, 172, 361, 473, 625
DdeI CTNAG 3 cut(s) 216, 320, 842
DpnI GATC 3 cut(s) 453, 471, 936
DpnII GATC 3 cut(s) 451, 469, 934
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 344
EagI CGGCCG 1 cut(s) 344
Eam1104I CTCTTC 3 cut(s) 126, 297, 703
EarI CTCTTC 3 cut(s) 126, 297, 703
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 344
Eco130I CCWWGG 3 cut(s) 360, 376, 589
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 217, 825
Eco47I GGWCC 3 cut(s) 199, 262, 833
Eco52I CGGCCG 1 cut(s) 344
EcoO109I RGGNCCY 3 cut(s) 262, 821, 822
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 360, 376, 589
EcoT38I GRGCYC 2 cut(s) 217, 825
ErhI CCWWGG 3 cut(s) 360, 376, 589
FaeI CATG 5 cut(s) 50, 175, 364, 476, 628
FatI CATG 5 cut(s) 46, 171, 360, 472, 624
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 451
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 4 cut(s) 57, 191, 526, 929
FriOI GRGCYC 2 cut(s) 217, 825
Fsp4HI GCNGC 4 cut(s) 57, 191, 526, 929
FspBI CTAG 4 cut(s) 33, 194, 281, 486
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 57, 191, 526, 929
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
HapII CCGG 4 cut(s) 273, 343, 347, 786
HhaI GCGC 1 cut(s) 56
Hin1II CATG 5 cut(s) 50, 175, 364, 476, 628
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 356, 629, 865
HpaII CCGG 4 cut(s) 273, 343, 347, 786
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 4 cut(s) 148, 373, 480, 1094
Hpy188I TCNGA 2 cut(s) 323, 435
Hpy188III TCNNGA 2 cut(s) 299, 605
Hpy8I GTNNAC 4 cut(s) 148, 373, 480, 1094
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 4 cut(s) 95, 228, 661, 1109
HpyCH4V TGCA 4 cut(s) 148, 746, 756, 1099
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 51, 56, 190, 282, 990
HpyF3I CTNAG 3 cut(s) 216, 320, 842
Hsp92II CATG 5 cut(s) 50, 175, 364, 476, 628
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 2 cut(s) 272, 342
KroNI GCCGGC 2 cut(s) 274, 344
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 451, 469, 934
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 4 cut(s) 43, 202, 537, 940
MaeI CTAG 4 cut(s) 33, 194, 281, 486
MalI GATC 3 cut(s) 453, 471, 936
MboI GATC 3 cut(s) 451, 469, 934
MboII GAAGA 7 cut(s) 98, 101, 140, 143, 314, 627, 720
MhlI GDGCHC 3 cut(s) 150, 217, 825
MluCI AATT 8 cut(s) 179, 334, 436, 618, 682, 997, 1020, 1135
MlyI GAGTC 2 cut(s) 638, 874
MroNI GCCGGC 2 cut(s) 272, 342
MseI TTAA 2 cut(s) 138, 186
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 4 cut(s) 273, 343, 347, 786
MspR9I CCNGG 1 cut(s) 787
MwoI GCNNNNNNNGC 6 cut(s) 42, 51, 56, 190, 282, 990
NaeI GCCGGC 2 cut(s) 274, 344
NciI CCSGG 1 cut(s) 787
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 236
NdeII GATC 3 cut(s) 451, 469, 934
NgoMIV GCCGGC 2 cut(s) 272, 342
NlaIII CATG 5 cut(s) 50, 175, 364, 476, 628
NlaIV GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
NspI RCATGY 1 cut(s) 175
PceI AGGCCT 1 cut(s) 691
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 2 cut(s) 274, 344
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 58, 192, 527, 930
PleI GAGTC 2 cut(s) 637, 873
PpsI GAGTC 2 cut(s) 637, 873
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
PspOMI GGGCCC 1 cut(s) 821
PspPI GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
PspPPI RGGWCCY 1 cut(s) 262
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 4 cut(s) 57, 191, 526, 929
Sau3AI GATC 3 cut(s) 451, 469, 934
Sau96I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 2 cut(s) 638, 874
ScrFI CCNGG 1 cut(s) 787
SduI GDGCHC 3 cut(s) 150, 217, 825
SinI GGWCC 3 cut(s) 199, 262, 833
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 8 cut(s) 179, 334, 436, 618, 682, 997, 1020, 1135
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 2 cut(s) 36, 119
SspMI CTAG 4 cut(s) 33, 194, 281, 486
StuI AGGCCT 1 cut(s) 691
StyD4I CCNGG 1 cut(s) 785
StyI CCWWGG 3 cut(s) 360, 376, 589
TaaI ACNGT 4 cut(s) 95, 228, 661, 1109
TaqI TCGA 2 cut(s) 5, 399
TasI AATT 8 cut(s) 179, 334, 436, 618, 682, 997, 1020, 1135
TatI WGTACW 4 cut(s) 288, 694, 700, 1104
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 2 cut(s) 523, 974
TseI GCWGC 4 cut(s) 56, 190, 525, 928
TspDTI ATGAA 3 cut(s) 223, 635, 1014
TspRI CASTG 2 cut(s) 523, 974
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 199, 262, 833
XapI RAATTY 2 cut(s) 334, 1020
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 1093
XspI CTAG 4 cut(s) 33, 194, 281, 486
ZrmI AGTACT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.