MD10G1286400.v1.1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0014688
Physical Location & Seq
Reverse (-)
37584820 .. 37586710
1891 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1286400.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGTCAATGGGTAGCAGTAGTTCTGCAGGGGAACCAGTTGCTGGCCGCCATGCATGTGCGGCATGCCGACACCAAAGGAAGAGGTGCGAAGAGGATTGCGTTATGGCTCCTTACTTCACAAACAAAGATGAAGATTTTAAAGCAGTGCACAGAATATTTGGCGTTAGCAACATGACAAAGTTGCTTAAGCAACTAGAAGACCAAAATCACAGGGGTACGGCCGTACAATCTTTCATATGGGAAGCCTATATGTGGAACCAAGACCCTGTGAACGGACCTCTAGGAAAGTACAGAAAATTAGAGAGAGAGAATGAACTGCTTAGGAACGCATTGAATGAAGAACAAAAGGCTTTGGCCTTGGCTGCATCCACAACGGAGGAGGAGCCACTTGCTTTGGGCCAAGAGAATAATAACAATAGTGGCAATATCGCAGATGATGTGGAAGGAGTGATACCTATATATGGAAGTTCTCTGAATTATGGTTATGCTAATCAAAGTTTAGCAATTGATGGTTCTACTAATGGCACTTATACTAATCTATTACAAGGGCAAGAGGCCACTGAAATGTCACAAGGGCAACAAGTATTAGGGCAAGGGAGAGGCTTTCATCATGGAGTTGTTTTGGTCAAGCAAGAAGCACCAGACCAACGAAGAGTAGTTGGCCTCGGTTCTTCTTCAGAACACTTTGGGTCAGTCGGTTTGATGTCCAGCCCTACGTTTCAGTACCAAAGGCTTATGCAATTTGAAGGACTCCCTAATATAGGGCCTCATATAAATGGGCATGGAAGAGGTCAAGTGGTTTTTGACCCTTCTGTTGGGCAAGAACAGCAAAGAGCATTAGGCTTGGTAGGGGCACCTCAAATTGGCCCAAATTTTGGTGATTTTTCTTTGGAAGGCCACAGGAGATCAACTATTACTCAAAGACATGATGACCGTTATTCACCTTATCATCATCGTCAACCACAACAACAACAACAGCATCATCCTGTGAACGCACAGAGGCAGGCGATGAACCAAGGGCAAAATCACCATAACTTTCAACGATACAGCTCGTTGCACAATTTCCACAGTTACGACAATGTTCAAGATGCAGAGCAGTTCAACCAAGTGAAAAGTGAAAGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

376

Amino Acids

41.9

Weight (kDa)

6.25

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 18 - 114 1.9e-30 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 853
AccB7I CCANNNNNTGG 2 cut(s) 41, 875
AciI CCGC 2 cut(s) 46, 59
AcoI YGGCCR 2 cut(s) 43, 219
AcsI RAATTY 1 cut(s) 871
AcuI CTGAAG 1 cut(s) 660
AfaI GTAC 4 cut(s) 217, 225, 290, 725
AfiI CCNNNNNNNGG 8 cut(s) 41, 252, 272, 461, 761, 815, 863, 875
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 334, 746, 1040, 1085, 1102
AluBI AGCT 1 cut(s) 1050
AluI AGCT 1 cut(s) 1050
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 41
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 871
AspS9I GGNCC 4 cut(s) 275, 397, 764, 866
AsuHPI GGTGA 3 cut(s) 890, 933, 1019
AvaII GGWCC 1 cut(s) 275
BaeGI GKGCMC 2 cut(s) 150, 856
BaeI ACNNNNGTAYC 2 cut(s) 207, 240
BanI GGYRCC 1 cut(s) 853
BarI GAAGNNNNNNTAC 2 cut(s) 435, 467
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 349
BccI CCATC 1 cut(s) 503
BceAI ACGGC 2 cut(s) 206, 234
BfaI CTAG 2 cut(s) 194, 281
BfmI CTRYAG 1 cut(s) 24
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 3 cut(s) 46, 60, 363
BlsI GCNGC 3 cut(s) 47, 61, 364
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 4 cut(s) 275, 397, 764, 866
BmiI GGNNCC 5 cut(s) 33, 108, 257, 384, 855
BmsI GCATC 3 cut(s) 374, 988, 1078
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 320
BsaJI CCNNGG 3 cut(s) 357, 664, 1015
Bsc4I CCNNNNNNNGG 8 cut(s) 41, 252, 272, 461, 761, 815, 863, 875
Bse1I ACTGG 1 cut(s) 35
BseDI CCNNGG 3 cut(s) 357, 664, 1015
BseGI GGATG 2 cut(s) 365, 982
BseLI CCNNNNNNNGG 8 cut(s) 41, 252, 272, 461, 761, 815, 863, 875
BseNI ACTGG 1 cut(s) 35
BseRI GAGGAG 2 cut(s) 392, 395
BseSI GKGCMC 2 cut(s) 150, 856
BseX3I CGGCCG 1 cut(s) 219
BseXI GCAGC 1 cut(s) 349
Bsh1285I CGRYCG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 853
BsiEI CGRYCG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 150
BslI CCNNNNNNNGG 8 cut(s) 41, 252, 272, 461, 761, 815, 863, 875
Bsp1286I GDGCHC 2 cut(s) 150, 856
Bsp143I GATC 1 cut(s) 905
BspACI CCGC 2 cut(s) 46, 59
BspLI GGNNCC 5 cut(s) 33, 108, 257, 384, 855
BspMAI CTGCAG 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 853
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 3 cut(s) 357, 664, 1015
BssMI GATC 1 cut(s) 905
BssT1I CCWWGG 2 cut(s) 357, 1015
Bst4CI ACNGT 2 cut(s) 935, 1070
Bst6I CTCTTC 4 cut(s) 74, 84, 646, 781
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 3 cut(s) 43, 64, 1005
BstDEI CTNAG 1 cut(s) 320
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 2 cut(s) 365, 982
BstKTI GATC 1 cut(s) 908
BstMBI GATC 1 cut(s) 905
BstMCI CGRYCG 1 cut(s) 222
BstMWI GCNNNNNNNGC 3 cut(s) 59, 362, 826
BstNSI RCATGY 2 cut(s) 57, 66
BstSFI CTRYAG 1 cut(s) 24
BstSLI GKGCMC 2 cut(s) 150, 856
BstV1I GCAGC 1 cut(s) 349
BstV2I GAAGAC 1 cut(s) 204
BstZI CGGCCG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 1022
BtsCI GGATG 2 cut(s) 365, 982
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 558
Cac8I GCNNGC 3 cut(s) 43, 64, 1005
CaiI CAGNNNCTG 1 cut(s) 41
Cfr13I GGNCC 4 cut(s) 275, 397, 764, 866
Csp6I GTAC 4 cut(s) 216, 224, 289, 724
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 8 cut(s) 50, 54, 63, 172, 611, 782, 926, 1125
CviQI GTAC 4 cut(s) 216, 224, 289, 724
DdeI CTNAG 1 cut(s) 320
DpnI GATC 1 cut(s) 907
DpnII GATC 1 cut(s) 905
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 2 cut(s) 43, 219
EagI CGGCCG 1 cut(s) 219
Eam1104I CTCTTC 4 cut(s) 74, 84, 646, 781
EarI CTCTTC 4 cut(s) 74, 84, 646, 781
EclXI CGGCCG 1 cut(s) 219
Eco130I CCWWGG 2 cut(s) 357, 1015
Eco47I GGWCC 1 cut(s) 275
Eco52I CGGCCG 1 cut(s) 219
Eco57I CTGAAG 1 cut(s) 660
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 764
EcoT14I CCWWGG 2 cut(s) 357, 1015
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 357, 1015
FaeI CATG 8 cut(s) 53, 57, 66, 175, 614, 785, 929, 1128
FatI CATG 8 cut(s) 49, 53, 62, 171, 610, 781, 925, 1124
FauNDI CATATG 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 46, 60, 363
FokI GGATG 2 cut(s) 352, 969
Fsp4HI GCNGC 3 cut(s) 46, 60, 363
FspBI CTAG 2 cut(s) 194, 281
GluI GCNGC 3 cut(s) 46, 60, 363
Hin1II CATG 8 cut(s) 53, 57, 66, 175, 614, 785, 929, 1128
HincII GTYRAC 1 cut(s) 959
HindII GTYRAC 1 cut(s) 959
HinfI GANTC 1 cut(s) 750
HphI GGTGA 3 cut(s) 890, 933, 1019
Hpy166II GTNNAC 4 cut(s) 148, 271, 959, 991
Hpy188I TCNGA 2 cut(s) 474, 679
Hpy188III TCNNGA 1 cut(s) 1085
Hpy8I GTNNAC 4 cut(s) 148, 271, 959, 991
HpyAV CCTTC 4 cut(s) 437, 740, 819, 887
HpyCH4III ACNGT 2 cut(s) 935, 1070
HpyCH4IV ACGT 1 cut(s) 716
HpyCH4V TGCA 7 cut(s) 26, 53, 148, 365, 739, 1057, 1091
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 362, 826
HpyF3I CTNAG 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 716
Hsp92II CATG 8 cut(s) 53, 57, 66, 175, 614, 785, 929, 1128
Kzo9I GATC 1 cut(s) 905
LmnI GCTCC 2 cut(s) 112, 382
Lsp1109I GCAGC 1 cut(s) 349
LweI GCATC 3 cut(s) 374, 988, 1078
MaeI CTAG 2 cut(s) 194, 281
MaeII ACGT 1 cut(s) 716
MaeIII GTNAC 2 cut(s) 567, 1070
MalI GATC 1 cut(s) 907
MboI GATC 1 cut(s) 905
MboII GAAGA 9 cut(s) 91, 101, 143, 209, 350, 663, 663, 666, 798
MfeI CAATTG 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 150, 856
MluCI AATT 7 cut(s) 296, 475, 504, 740, 861, 871, 1060
MlyI GAGTC 1 cut(s) 744
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 2 cut(s) 138, 186
MslI CAYNNNNRTG 3 cut(s) 54, 563, 774
MspCI CTTAAG 1 cut(s) 185
MunI CAATTG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 59, 362, 826
NdeI CATATG 1 cut(s) 236
NdeII GATC 1 cut(s) 905
NlaIII CATG 8 cut(s) 53, 57, 66, 175, 614, 785, 929, 1128
NlaIV GGNNCC 5 cut(s) 33, 108, 257, 384, 855
NmuCI GTSAC 1 cut(s) 567
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 2 cut(s) 57, 66
PaeI GCATGC 1 cut(s) 66
PflMI CCANNNNNTGG 2 cut(s) 41, 875
PkrI GCNGC 3 cut(s) 47, 61, 364
PleI GAGTC 1 cut(s) 744
PpsI GAGTC 1 cut(s) 744
PspN4I GGNNCC 5 cut(s) 33, 108, 257, 384, 855
PspPI GGNCC 4 cut(s) 275, 397, 764, 866
PsrI GAACNNNNNNTAC 1 cut(s) 36
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 41
RsaI GTAC 4 cut(s) 217, 225, 290, 725
RsaNI GTAC 4 cut(s) 216, 224, 289, 724
RseI CAYNNNNRTG 3 cut(s) 54, 563, 774
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 3 cut(s) 46, 60, 363
Sau3AI GATC 1 cut(s) 905
Sau96I GGNCC 4 cut(s) 275, 397, 764, 866
SchI GAGTC 1 cut(s) 744
SduI GDGCHC 2 cut(s) 150, 856
SetI ASST 8 cut(s) 86, 280, 457, 719, 793, 859, 946, 1052
SfaNI GCATC 3 cut(s) 374, 988, 1078
SfcI CTRYAG 1 cut(s) 24
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 3 cut(s) 54, 563, 774
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 66
Sse9I AATT 7 cut(s) 296, 475, 504, 740, 861, 871, 1060
SsiI CCGC 2 cut(s) 46, 59
SspI AATATT 1 cut(s) 156
SspMI CTAG 2 cut(s) 194, 281
StyI CCWWGG 2 cut(s) 357, 1015
TaaI ACNGT 2 cut(s) 935, 1070
TaiI ACGT 1 cut(s) 719
TasI AATT 7 cut(s) 296, 475, 504, 740, 861, 871, 1060
TatI WGTACW 1 cut(s) 288
TauI GCSGC 2 cut(s) 48, 62
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 2 cut(s) 150, 565
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 1 cut(s) 362
Tsp45I GTSAC 1 cut(s) 567
TspDTI ATGAA 6 cut(s) 144, 223, 327, 351, 596, 1025
TspGWI ACGGA 2 cut(s) 288, 389
TspRI CASTG 2 cut(s) 150, 565
Van91I CCANNNNNTGG 2 cut(s) 41, 875
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 275
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 1 cut(s) 871
XceI RCATGY 2 cut(s) 57, 66
XspI CTAG 2 cut(s) 194, 281
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.