Rmu_sc0019694.1_g000003

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019694.1
OG0014688
Physical Location & Seq
Forward (+)
21221 .. 22995
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019694.1_g000003.1.cds

Sequence Viewer

Length: 1047 bp
atgtcgattggtagcagtaatactggggaacctagcgggggtcgccatgcctgcgctgcgtgtcggcaccagagaaaaaggtgcgaagaagactgtgtgatggccccttacttcacggcggataaggaagaagagtttaaagctgtgcacaaacttttcggcgtgagcaacatgtcaaaattgcttaagcaactagaggaccaaaatcatagggctcaggccgtacagtctttcatatgggaagcctatatgtggaagcaggaccccattgccggccctctaggcaagtacaaggctctagaagaggagtgtgaatatctcagaaacctactgaattcgagccggccggaacaggaatccatgggggttgttgaccaaggaaataccaaaggcgaagtcgaaggaggaggagtacccatttatggaaggggtctgaattatggttatgctgatcaaactttagggttagatcatgggtgtacgactagttttacttctctactacaagggcaagacactgaaagcagcaagggtctagcagattgtgtttctgtggcttctgcttatcaaatgcctatttcccaatcccaagggagaggctttcaagaccatagaagaattggcatggagtcattcaacttttttcatcagtacccaacagttcaaggagctaatgtccataattataggcctgtacaagtacaaggaagagggagaggaactggaggaataatgatagattgtgcaagaacctgcaatgggcttgtagtttatgaccctcatactgggcaggtacaacaaagagaaataggggcaatggggccccaagttggtcctattcttagtagccataggagaggtacgagtcaaagattttcaccttatgatcagcttaaccctattcaagtgccaagacaagcgatgaggctgcaagatcaaaaccagcaaagttttccagcacaacatcagtgggatactaatagccagagttgcgacaattttcaagatgcagagcatctcaatgaagtgaagaatgaaaagccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

348

Amino Acids

38.77

Weight (kDa)

6.18

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 761, 781
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 2 cut(s) 36, 119
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 9 cut(s) 225, 290, 414, 481, 653, 696, 702, 795, 862
AfiI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 5 cut(s) 605, 637, 665, 905, 1004
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 3 cut(s) 143, 671, 892
AluI AGCT 3 cut(s) 143, 671, 892
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 6 cut(s) 102, 219, 274, 344, 689, 821
ApaI GGGCCC 1 cut(s) 825
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 56, 525, 928
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
AsuHPI GGTGA 1 cut(s) 870
AvaII GGWCC 3 cut(s) 199, 262, 833
BaeGI GKGCMC 2 cut(s) 150, 825
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 217, 825
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 43, 537, 915
BccI CCATC 1 cut(s) 94
BceAI ACGGC 2 cut(s) 132, 206
BcgI CGANNNNNNTGC 2 cut(s) 910, 944
BciVI GTATCC 1 cut(s) 967
BclI TGATCA 2 cut(s) 451, 886
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 6 cut(s) 33, 194, 281, 299, 486, 536
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 761, 781
BfuI GTATCC 1 cut(s) 967
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 3 cut(s) 57, 526, 929
BlsI GCNGC 3 cut(s) 58, 527, 930
Bme18I GGWCC 3 cut(s) 199, 262, 833
BmgT120I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
BmiI GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
BmrI ACTGGG 2 cut(s) 33, 795
BmsI GCATC 2 cut(s) 997, 1024
BmuI ACTGGG 2 cut(s) 33, 795
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 744
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 360, 376, 589
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 660, 690
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
Bse118I RCCGGY 2 cut(s) 272, 342
Bse1I ACTGG 3 cut(s) 28, 727, 790
Bse3DI GCAATG 3 cut(s) 267, 763, 822
BseDI CCNNGG 3 cut(s) 360, 376, 589
BseLI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
BseMI GCAATG 3 cut(s) 267, 763, 822
BseMII CTCAG 2 cut(s) 230, 334
BseNI ACTGG 3 cut(s) 28, 727, 790
BseRI GAGGAG 3 cut(s) 320, 420, 423
BseSI GKGCMC 2 cut(s) 150, 825
BseX3I CGGCCG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 43, 537, 915
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 273, 343, 347
BslI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 759, 785, 830
BsnI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
Bsp120I GGGCCC 1 cut(s) 821
Bsp1286I GDGCHC 3 cut(s) 150, 217, 825
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 4 cut(s) 451, 469, 886, 934
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 36, 119
BspANI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BspCNI CTCAG 2 cut(s) 229, 333
BspLI GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
BspMI ACCTGC 2 cut(s) 761, 781
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 3 cut(s) 267, 763, 822
BsrFI RCCGGY 2 cut(s) 272, 342
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 3 cut(s) 28, 727, 790
BssAI RCCGGY 2 cut(s) 272, 342
BssECI CCNNGG 3 cut(s) 360, 376, 589
BssMI GATC 4 cut(s) 451, 469, 886, 934
BssT1I CCWWGG 3 cut(s) 360, 376, 589
Bst4CI ACNGT 3 cut(s) 95, 228, 661
Bst6I CTCTTC 3 cut(s) 126, 297, 703
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 694
BstC8I GCNNGC 3 cut(s) 52, 274, 344
BstDEI CTNAG 3 cut(s) 216, 320, 842
BstDSI CCRYGG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 454, 472, 889, 937
BstMBI GATC 4 cut(s) 451, 469, 886, 934
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 990
BstNSI RCATGY 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 150, 825
BstV1I GCAGC 3 cut(s) 43, 537, 915
BstV2I GAAGAC 1 cut(s) 96
BstZI CGGCCG 1 cut(s) 344
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 935
BtsIMutI CAGTG 2 cut(s) 516, 974
BveI ACCTGC 2 cut(s) 761, 781
Cac8I GCNNGC 3 cut(s) 52, 274, 344
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 272, 342
Cfr13I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
Csp6I GTAC 9 cut(s) 224, 289, 413, 480, 652, 695, 701, 794, 861
CspCI CAANNNNNGTGG 2 cut(s) 950, 985
CviAII CATG 6 cut(s) 47, 172, 361, 473, 625, 1044
CviQI GTAC 9 cut(s) 224, 289, 413, 480, 652, 695, 701, 794, 861
DdeI CTNAG 3 cut(s) 216, 320, 842
DpnI GATC 4 cut(s) 453, 471, 888, 936
DpnII GATC 4 cut(s) 451, 469, 886, 934
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 344
EagI CGGCCG 1 cut(s) 344
Eam1104I CTCTTC 3 cut(s) 126, 297, 703
EarI CTCTTC 3 cut(s) 126, 297, 703
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 344
Eco130I CCWWGG 3 cut(s) 360, 376, 589
Eco147I AGGCCT 1 cut(s) 691
Eco24I GRGCYC 2 cut(s) 217, 825
Eco47I GGWCC 3 cut(s) 199, 262, 833
Eco52I CGGCCG 1 cut(s) 344
EcoO109I RGGNCCY 3 cut(s) 262, 821, 822
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 360, 376, 589
EcoT38I GRGCYC 2 cut(s) 217, 825
ErhI CCWWGG 3 cut(s) 360, 376, 589
FaeI CATG 6 cut(s) 50, 175, 364, 476, 628, 1047
FatI CATG 6 cut(s) 46, 171, 360, 472, 624, 1043
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 236
FbaI TGATCA 2 cut(s) 451, 886
Fnu4HI GCNGC 3 cut(s) 57, 526, 929
FriOI GRGCYC 2 cut(s) 217, 825
Fsp4HI GCNGC 3 cut(s) 57, 526, 929
FspBI CTAG 6 cut(s) 33, 194, 281, 299, 486, 536
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 57, 526, 929
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 6 cut(s) 104, 221, 276, 346, 691, 823
HapII CCGG 3 cut(s) 273, 343, 347
HhaI GCGC 1 cut(s) 56
Hin1II CATG 6 cut(s) 50, 175, 364, 476, 628, 1047
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 356, 629, 865
HpaII CCGG 3 cut(s) 273, 343, 347
HphI GGTGA 1 cut(s) 870
Hpy166II GTNNAC 3 cut(s) 148, 373, 480
Hpy188I TCNGA 2 cut(s) 323, 435
Hpy188III TCNNGA 3 cut(s) 299, 605, 1004
Hpy8I GTNNAC 3 cut(s) 148, 373, 480
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 3 cut(s) 95, 228, 661
HpyCH4V TGCA 5 cut(s) 148, 746, 756, 931, 1010
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 990
HpyF3I CTNAG 3 cut(s) 216, 320, 842
Hsp92II CATG 6 cut(s) 50, 175, 364, 476, 628, 1047
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 2 cut(s) 272, 342
KroNI GCCGGC 2 cut(s) 274, 344
Ksp22I TGATCA 2 cut(s) 451, 886
Kzo9I GATC 4 cut(s) 451, 469, 886, 934
LmnI GCTCC 1 cut(s) 668
Lsp1109I GCAGC 3 cut(s) 43, 537, 915
LweI GCATC 2 cut(s) 997, 1024
MaeI CTAG 6 cut(s) 33, 194, 281, 299, 486, 536
MalI GATC 4 cut(s) 453, 471, 888, 936
MboI GATC 4 cut(s) 451, 469, 886, 934
MboII GAAGA 8 cut(s) 98, 101, 140, 143, 314, 627, 720, 1042
MhlI GDGCHC 3 cut(s) 150, 217, 825
MluCI AATT 6 cut(s) 179, 334, 436, 618, 682, 997
MlyI GAGTC 2 cut(s) 638, 874
MroNI GCCGGC 2 cut(s) 272, 342
MseI TTAA 3 cut(s) 138, 186, 894
MslI CAYNNNNRTG 1 cut(s) 1020
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 273, 343, 347
MwoI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 990
NaeI GCCGGC 2 cut(s) 274, 344
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 236
NdeII GATC 4 cut(s) 451, 469, 886, 934
NgoMIV GCCGGC 2 cut(s) 272, 342
NlaIII CATG 6 cut(s) 50, 175, 364, 476, 628, 1047
NlaIV GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
NspI RCATGY 1 cut(s) 175
PceI AGGCCT 1 cut(s) 691
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 2 cut(s) 274, 344
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 58, 527, 930
PleI GAGTC 2 cut(s) 637, 873
PpsI GAGTC 2 cut(s) 637, 873
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 7 cut(s) 30, 68, 105, 264, 822, 823, 824
PspOMI GGGCCC 1 cut(s) 821
PspPI GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
PspPPI RGGWCCY 1 cut(s) 262
RsaI GTAC 9 cut(s) 225, 290, 414, 481, 653, 696, 702, 795, 862
RsaNI GTAC 9 cut(s) 224, 289, 413, 480, 652, 695, 701, 794, 861
RseI CAYNNNNRTG 1 cut(s) 1020
SaqAI TTAA 3 cut(s) 138, 186, 894
SatI GCNGC 3 cut(s) 57, 526, 929
Sau3AI GATC 4 cut(s) 451, 469, 886, 934
Sau96I GGNCC 7 cut(s) 103, 199, 262, 275, 821, 822, 833
SchI GAGTC 2 cut(s) 638, 874
SduI GDGCHC 3 cut(s) 150, 217, 825
SfaNI GCATC 2 cut(s) 997, 1024
SinI GGWCC 3 cut(s) 199, 262, 833
SmiMI CAYNNNNRTG 1 cut(s) 1020
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 6 cut(s) 179, 334, 436, 618, 682, 997
SseBI AGGCCT 1 cut(s) 691
SsiI CCGC 2 cut(s) 36, 119
SspMI CTAG 6 cut(s) 33, 194, 281, 299, 486, 536
StuI AGGCCT 1 cut(s) 691
StyI CCWWGG 3 cut(s) 360, 376, 589
TaaI ACNGT 3 cut(s) 95, 228, 661
TaqI TCGA 3 cut(s) 5, 338, 399
TasI AATT 6 cut(s) 179, 334, 436, 618, 682, 997
TatI WGTACW 3 cut(s) 288, 694, 700
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 138, 186, 894
Tru9I TTAA 3 cut(s) 138, 186, 894
TscAI CASTG 2 cut(s) 523, 974
TseI GCWGC 3 cut(s) 56, 525, 928
TspDTI ATGAA 3 cut(s) 223, 635, 1038
TspRI CASTG 2 cut(s) 523, 974
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 199, 262, 833
XapI RAATTY 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 617
XspI CTAG 6 cut(s) 33, 194, 281, 299, 486, 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.