pycom05g28390

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014688
Physical Location & Seq
Reverse (-)
29130255 .. 29130848
594 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28390.1

Sequence Viewer

Length: 594 bp
ATGTCACAGGAGCAACAAGTATTAGGGCAAGGGAGAGGCTTTCATCATGGAGCTGCTTCGGCCAAGCAACAAGCACGAGACCAACTAGGAGTCGTTGGCCTCGATTCTTCTGCAGGACAGTTTGGGATGGTCGGCTTGATGTCCACCCCAAAGTTGCAGTCCCAAAGGCCTATGCAATTTGAAGGACGCCCAAATATAGGACCTAATATGTATGGGCTAGGAAGAGGTCAAGTGGTTTTTGACCCTTCTGTTGGGCAAGGACAGCAAAGAGCATTAGGCTCAGCCAGGGCAGCTCAAATTGGCCCACATTTTGGTGATTTTTCTTTACTGGGCCACACGAGATCAGCTATTACTCATAGCCTTTATTCACCTTATCACCACCAACAACCGCATCATCCTGTGCACGCGCAGAGACAGGTGATGAACCAAGGGCAAAATCACCCTAACTTTCAACAGTACAGCTCGTTGAACAATTGCCACAATTACGACAACGTTCAAGGTACATATCATACAATAATTGCATTCTCTTTCCATTTTCTTGTTCAAAGATTGATTTTGTATGATAATTATGAGCATGTGTACGTAGCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

198

Amino Acids

21.9

Weight (kDa)

9.17

Isoelectric Point (pI)

40.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 311
AccII CGCG 1 cut(s) 407
AciI CCGC 1 cut(s) 389
AclI AACGTT 1 cut(s) 492
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 1 cut(s) 187
AfaI GTAC 3 cut(s) 458, 502, 581
AfiI CCNNNNNNNGG 3 cut(s) 197, 251, 311
AgsI TTSAA 5 cut(s) 182, 452, 469, 497, 545
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 4 cut(s) 53, 293, 347, 462
AluI AGCT 4 cut(s) 53, 293, 347, 462
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 72, 406
Alw44I GTGCAC 1 cut(s) 401
AoxI GGCC 5 cut(s) 60, 97, 167, 301, 331
ApaLI GTGCAC 1 cut(s) 401
ApeKI GCWGC 2 cut(s) 53, 290
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 3 cut(s) 200, 302, 331
AsuHPI GGTGA 5 cut(s) 326, 360, 368, 430, 431
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 1 cut(s) 405
BauI CACGAG 2 cut(s) 75, 337
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 40, 302
BccI CCATC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 92, 126
BciT130I CCWGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 72, 406
BfaI CTAG 2 cut(s) 86, 218
BfmI CTRYAG 1 cut(s) 111
BisI GCNGC 2 cut(s) 54, 291
BlpI GCTNAGC 1 cut(s) 280
BlsI GCNGC 2 cut(s) 55, 292
Bme1390I CCNGG 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 3 cut(s) 200, 302, 331
BmrFI CCNGG 1 cut(s) 286
BmrI ACTGGG 1 cut(s) 338
BmsI GCATC 1 cut(s) 400
BmuI ACTGGG 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 280
BsaAI YACGTR 1 cut(s) 583
BsaHI GRCGYC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 2 cut(s) 285, 427
Bsc4I CCNNNNNNNGG 3 cut(s) 197, 251, 311
Bse1I ACTGG 1 cut(s) 333
BseBI CCWGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 285, 427
BseGI GGATG 2 cut(s) 132, 394
BseLI CCNNNNNNNGG 3 cut(s) 197, 251, 311
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 333
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 2 cut(s) 40, 302
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 5 cut(s) 62, 99, 169, 303, 333
BsiHKAI GWGCWC 1 cut(s) 405
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 3 cut(s) 197, 251, 311
BsmAI GTCTC 2 cut(s) 72, 406
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 521
BsnI GGCC 5 cut(s) 62, 99, 169, 303, 333
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 405
Bsp143I GATC 1 cut(s) 341
Bsp1720I GCTNAGC 1 cut(s) 280
BspACI CCGC 1 cut(s) 389
BspANI GGCC 5 cut(s) 62, 99, 169, 303, 333
BspCNI CTCAG 1 cut(s) 293
BspFNI CGCG 1 cut(s) 407
BspMAI CTGCAG 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 285, 427
BssMI GATC 1 cut(s) 341
BssNI GRCGYC 1 cut(s) 187
BssSI CACGAG 2 cut(s) 75, 337
BssT1I CCWWGG 1 cut(s) 427
Bst2BI CACGAG 2 cut(s) 75, 337
Bst2UI CCWGG 1 cut(s) 286
Bst4CI ACNGT 2 cut(s) 120, 456
Bst6I CTCTTC 1 cut(s) 217
BstACI GRCGYC 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 583
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 132, 394
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 1 cut(s) 344
BstMAI GTCTC 2 cut(s) 72, 406
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 3 cut(s) 59, 262, 290
BstNI CCWGG 1 cut(s) 286
BstNSI RCATGY 1 cut(s) 578
BstSCI CCNGG 1 cut(s) 284
BstSFI CTRYAG 1 cut(s) 111
BstSLI GKGCMC 1 cut(s) 405
BstSNI TACGTA 1 cut(s) 583
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 2 cut(s) 40, 302
BsuRI GGCC 5 cut(s) 62, 99, 169, 303, 333
BtsCI GGATG 2 cut(s) 132, 394
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 200, 302, 331
CseI GACGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 457, 501, 580
CviAII CATG 2 cut(s) 47, 575
CviQI GTAC 3 cut(s) 457, 501, 580
DdeI CTNAG 1 cut(s) 280
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 217
EarI CTCTTC 1 cut(s) 217
Eco105I TACGTA 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 427
Eco147I AGGCCT 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 284
EcoT14I CCWWGG 1 cut(s) 427
ErhI CCWWGG 1 cut(s) 427
FaeI CATG 2 cut(s) 50, 578
FaqI GGGAC 1 cut(s) 145
FatI CATG 2 cut(s) 46, 574
Fnu4HI GCNGC 2 cut(s) 54, 291
FokI GGATG 2 cut(s) 139, 381
Fsp4HI GCNGC 2 cut(s) 54, 291
FspBI CTAG 2 cut(s) 86, 218
GlaI GCGC 1 cut(s) 408
GluI GCNGC 2 cut(s) 54, 291
HaeIII GGCC 5 cut(s) 62, 99, 169, 303, 333
HgaI GACGC 1 cut(s) 195
HhaI GCGC 1 cut(s) 409
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 2 cut(s) 50, 578
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 2 cut(s) 90, 104
HphI GGTGA 5 cut(s) 326, 360, 368, 430, 431
Hpy166II GTNNAC 3 cut(s) 144, 403, 580
Hpy8I GTNNAC 3 cut(s) 144, 403, 580
HpyAV CCTTC 2 cut(s) 176, 255
HpyCH4III ACNGT 2 cut(s) 120, 456
HpyCH4IV ACGT 2 cut(s) 492, 582
HpyCH4V TGCA 5 cut(s) 113, 157, 175, 403, 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 262, 290
HpyF3I CTNAG 1 cut(s) 280
HpySE526I ACGT 2 cut(s) 492, 582
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 2 cut(s) 50, 578
HspAI GCGC 1 cut(s) 407
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 10, 50
LpnPI CCDG 6 cut(s) 99, 271, 298, 314, 401, 411
Lsp1109I GCAGC 2 cut(s) 40, 302
LweI GCATC 1 cut(s) 400
MaeI CTAG 2 cut(s) 86, 218
MaeII ACGT 2 cut(s) 492, 582
MaeIII GTNAC 1 cut(s) 3
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 2 cut(s) 99, 234
MfeI CAATTG 1 cut(s) 472
MhlI GDGCHC 1 cut(s) 405
MluCI AATT 7 cut(s) 176, 297, 472, 481, 516, 565, 589
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 3 cut(s) 29, 110, 218
MseI TTAA 1 cut(s) 592
MslI CAYNNNNRTG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 286
MunI CAATTG 1 cut(s) 472
Mva1269I GAATGC 1 cut(s) 521
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 3 cut(s) 59, 262, 290
NdeII GATC 1 cut(s) 341
NlaIII CATG 2 cut(s) 50, 578
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 578
PceI AGGCCT 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 99
PctI GAATGC 1 cut(s) 521
PfeI GAWTC 1 cut(s) 104
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 2 cut(s) 55, 292
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Ppu21I YACGTR 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 200
Psp1406I AACGTT 1 cut(s) 492
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PspPI GGNCC 3 cut(s) 200, 302, 331
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 115
RsaI GTAC 3 cut(s) 458, 502, 581
RsaNI GTAC 3 cut(s) 457, 501, 580
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 592
SatI GCNGC 2 cut(s) 54, 291
Sau3AI GATC 1 cut(s) 341
Sau96I GGNCC 3 cut(s) 200, 302, 331
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 405
SfaNI GCATC 1 cut(s) 400
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 200
SmiMI CAYNNNNRTG 1 cut(s) 312
SnaBI TACGTA 1 cut(s) 583
Sse9I AATT 7 cut(s) 176, 297, 472, 481, 516, 565, 589
SseBI AGGCCT 1 cut(s) 169
SsiI CCGC 1 cut(s) 389
SspMI CTAG 2 cut(s) 86, 218
StuI AGGCCT 1 cut(s) 169
StyD4I CCNGG 1 cut(s) 284
StyI CCWWGG 1 cut(s) 427
TaaI ACNGT 2 cut(s) 120, 456
TaiI ACGT 2 cut(s) 495, 585
TaqI TCGA 1 cut(s) 102
TasI AATT 7 cut(s) 176, 297, 472, 481, 516, 565, 589
TatI WGTACW 1 cut(s) 456
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 592
Tru9I TTAA 1 cut(s) 592
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 2 cut(s) 53, 290
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 32, 437
Van91I CCANNNNNTGG 1 cut(s) 311
VneI GTGCAC 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 578
XspI CTAG 2 cut(s) 86, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.