Rroxscaffold_1G00066510

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014688
Physical Location & Seq
Reverse (-)
88037279 .. 88038004
726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00066510.1

Sequence Viewer

Length: 726 bp
ATGTCGATTGGTAGCAGTAATACTGGGGAACCTAGCGGGGGTCGCCATGCCTGCGCTGCGTGTCGGCACCAGAGAAAAAGGTGCGAAGAAGACTGTGTGATGGCCCCTTACTTCACGGCGGATAAGGAAGAAGAGTTTAAAGCTGTGCACAAACTTTTCGGCGTCAGCAACATGTCAAAATTGCTTAAGCAACTAGAGGACCAAAATCACAGGGCTCAGGCCGTACAGTCTTTCATTTGGGAAGCCTATATGTGGAAGCAGGACCCCATTGCCGGCCCTCTAGGCAAGTACAAGGCTCTAGAAGAGGAGTGTGAATATCTCAGAAACCTACTGAATTCGAGCCGGCCGGAACAGGAATCCATGGGGGTTGTTGACCAAGGAAATACCAAAGGTGAAGTCGAAGGAGGAGGAGTACCCATTTATGGAAGGGGTCTGAATTATGGTTATACTGATCAAACTTTAGGGTTAGATCATGGGTGTACGACTAGTTTTACTTCTCTACTACAAGGGCCAGACACTGAAAGCAGCAAGGGTTTAGCAGATTGTGTTTCTGTGGCTTCTGCTTATCAAATGCCTATTTCCCAAGGGAGAGGCTTTCAAGACCATAGAAGAACTGGCATGGAGTCATTCAACTTTTTCATCAGTACCCAACAGTTCAAGGAGCTAATGTCCATAATTATAGGCCTGTACATGTACAAGGAAAAGGGAGAGGAACTGGAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

241

Amino Acids

26.91

Weight (kDa)

5.27

Isoelectric Point (pI)

57.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 17 - 112 3.5e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 2 cut(s) 36, 119
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 7 cut(s) 225, 290, 414, 481, 646, 689, 695
AfiI CCNNNNNNNGG 4 cut(s) 38, 252, 272, 422
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 2 cut(s) 171, 690
AgsI TTSAA 3 cut(s) 599, 631, 658
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 2 cut(s) 143, 664
AluI AGCT 2 cut(s) 143, 664
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 518
AoxI GGCC 6 cut(s) 102, 219, 274, 344, 509, 682
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 56, 525
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 5 cut(s) 103, 199, 262, 275, 509
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 2 cut(s) 199, 262
BaeGI GKGCMC 1 cut(s) 150
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 43, 537
BccI CCATC 1 cut(s) 94
BceAI ACGGC 2 cut(s) 132, 206
BclI TGATCA 1 cut(s) 451
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 5 cut(s) 33, 194, 281, 299, 486
BfrI CTTAAG 1 cut(s) 185
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 2 cut(s) 57, 526
BlsI GCNGC 2 cut(s) 58, 527
Bme18I GGWCC 2 cut(s) 199, 262
BmgT120I GGNCC 5 cut(s) 103, 199, 262, 275, 509
BmiI GGNNCC 4 cut(s) 30, 68, 105, 264
BmrI ACTGGG 1 cut(s) 33
BmuI ACTGGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 3 cut(s) 360, 376, 583
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 653, 683
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 252, 272, 422
Bse118I RCCGGY 2 cut(s) 272, 342
Bse1I ACTGG 3 cut(s) 28, 619, 720
Bse3DI GCAATG 1 cut(s) 267
BseDI CCNNGG 3 cut(s) 360, 376, 583
BseLI CCNNNNNNNGG 4 cut(s) 38, 252, 272, 422
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 2 cut(s) 230, 334
BseNI ACTGG 3 cut(s) 28, 619, 720
BseRI GAGGAG 3 cut(s) 320, 420, 423
BseSI GKGCMC 1 cut(s) 150
BseX3I CGGCCG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 43, 537
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 6 cut(s) 104, 221, 276, 346, 511, 684
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 273, 343, 347
BslI CCNNNNNNNGG 4 cut(s) 38, 252, 272, 422
BsnI GGCC 6 cut(s) 104, 221, 276, 346, 511, 684
Bsp1286I GDGCHC 2 cut(s) 150, 217
Bsp1407I TGTACA 2 cut(s) 687, 693
Bsp143I GATC 2 cut(s) 451, 469
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 36, 119
BspANI GGCC 6 cut(s) 104, 221, 276, 346, 511, 684
BspCNI CTCAG 2 cut(s) 229, 333
BspLI GGNNCC 4 cut(s) 30, 68, 105, 264
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 272, 342
BsrGI TGTACA 2 cut(s) 687, 693
BsrI ACTGG 3 cut(s) 28, 619, 720
BssAI RCCGGY 2 cut(s) 272, 342
BssECI CCNNGG 3 cut(s) 360, 376, 583
BssMI GATC 2 cut(s) 451, 469
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 360, 376, 583
Bst4CI ACNGT 3 cut(s) 95, 228, 654
Bst6I CTCTTC 2 cut(s) 126, 297
BstACI GRCGYC 1 cut(s) 162
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 2 cut(s) 687, 693
BstC8I GCNNGC 3 cut(s) 52, 274, 344
BstDEI CTNAG 2 cut(s) 216, 320
BstDSI CCRYGG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 2 cut(s) 454, 472
BstMBI GATC 2 cut(s) 451, 469
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 4 cut(s) 42, 51, 56, 282
BstNSI RCATGY 2 cut(s) 175, 694
BstSLI GKGCMC 1 cut(s) 150
BstV1I GCAGC 2 cut(s) 43, 537
BstV2I GAAGAC 1 cut(s) 96
BstZI CGGCCG 1 cut(s) 344
BsuRI GGCC 6 cut(s) 104, 221, 276, 346, 511, 684
BtgI CCRYGG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 516
Cac8I GCNNGC 3 cut(s) 52, 274, 344
CaiI CAGNNNCTG 1 cut(s) 518
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 272, 342
Cfr13I GGNCC 5 cut(s) 103, 199, 262, 275, 509
CseI GACGC 1 cut(s) 151
Csp6I GTAC 7 cut(s) 224, 289, 413, 480, 645, 688, 694
CviAII CATG 6 cut(s) 47, 172, 361, 473, 619, 691
CviQI GTAC 7 cut(s) 224, 289, 413, 480, 645, 688, 694
DdeI CTNAG 2 cut(s) 216, 320
DpnI GATC 2 cut(s) 453, 471
DpnII GATC 2 cut(s) 451, 469
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 344
EagI CGGCCG 1 cut(s) 344
Eam1104I CTCTTC 2 cut(s) 126, 297
EarI CTCTTC 2 cut(s) 126, 297
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 344
Eco130I CCWWGG 3 cut(s) 360, 376, 583
Eco147I AGGCCT 1 cut(s) 684
Eco24I GRGCYC 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 199, 262
Eco52I CGGCCG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 262
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 360, 376, 583
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 3 cut(s) 360, 376, 583
FaeI CATG 6 cut(s) 50, 175, 364, 476, 622, 694
FatI CATG 6 cut(s) 46, 171, 360, 472, 618, 690
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 2 cut(s) 57, 526
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 57, 526
FspBI CTAG 5 cut(s) 33, 194, 281, 299, 486
GlaI GCGC 1 cut(s) 55
GluI GCNGC 2 cut(s) 57, 526
HaeIII GGCC 6 cut(s) 104, 221, 276, 346, 511, 684
HapII CCGG 3 cut(s) 273, 343, 347
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 6 cut(s) 50, 175, 364, 476, 622, 694
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 356, 623
HpaII CCGG 3 cut(s) 273, 343, 347
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 3 cut(s) 148, 373, 480
Hpy188I TCNGA 2 cut(s) 323, 435
Hpy188III TCNNGA 2 cut(s) 299, 599
Hpy8I GTNNAC 3 cut(s) 148, 373, 480
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 3 cut(s) 95, 228, 654
HpyCH4V TGCA 1 cut(s) 148
HpyF10VI GCNNNNNNNGC 4 cut(s) 42, 51, 56, 282
HpyF3I CTNAG 2 cut(s) 216, 320
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 6 cut(s) 50, 175, 364, 476, 622, 694
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 2 cut(s) 272, 342
KroNI GCCGGC 2 cut(s) 274, 344
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 2 cut(s) 451, 469
LmnI GCTCC 1 cut(s) 661
Lsp1109I GCAGC 2 cut(s) 43, 537
MaeI CTAG 5 cut(s) 33, 194, 281, 299, 486
MalI GATC 2 cut(s) 453, 471
MboI GATC 2 cut(s) 451, 469
MboII GAAGA 6 cut(s) 98, 101, 140, 143, 314, 621
MhlI GDGCHC 2 cut(s) 150, 217
MluCI AATT 4 cut(s) 179, 334, 436, 675
MlyI GAGTC 1 cut(s) 632
MnlI CCTC 8 cut(s) 190, 288, 298, 398, 401, 584, 703, 712
MroNI GCCGGC 2 cut(s) 272, 342
MseI TTAA 2 cut(s) 138, 186
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 273, 343, 347
MwoI GCNNNNNNNGC 4 cut(s) 42, 51, 56, 282
NaeI GCCGGC 2 cut(s) 274, 344
NcoI CCATGG 1 cut(s) 360
NdeII GATC 2 cut(s) 451, 469
NgoMIV GCCGGC 2 cut(s) 272, 342
NlaIII CATG 6 cut(s) 50, 175, 364, 476, 622, 694
NlaIV GGNNCC 4 cut(s) 30, 68, 105, 264
NspI RCATGY 2 cut(s) 175, 694
PceI AGGCCT 1 cut(s) 684
PciI ACATGT 2 cut(s) 171, 690
PdiI GCCGGC 2 cut(s) 274, 344
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 2 cut(s) 58, 527
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 2 cut(s) 171, 690
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 30, 68, 105, 264
PspPI GGNCC 5 cut(s) 103, 199, 262, 275, 509
PspPPI RGGWCCY 1 cut(s) 262
PstNI CAGNNNCTG 1 cut(s) 518
RsaI GTAC 7 cut(s) 225, 290, 414, 481, 646, 689, 695
RsaNI GTAC 7 cut(s) 224, 289, 413, 480, 645, 688, 694
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 2 cut(s) 57, 526
Sau3AI GATC 2 cut(s) 451, 469
Sau96I GGNCC 5 cut(s) 103, 199, 262, 275, 509
SchI GAGTC 1 cut(s) 632
SduI GDGCHC 2 cut(s) 150, 217
SetI ASST 6 cut(s) 34, 83, 145, 330, 394, 666
SinI GGWCC 2 cut(s) 199, 262
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 4 cut(s) 179, 334, 436, 675
SseBI AGGCCT 1 cut(s) 684
SsiI CCGC 2 cut(s) 36, 119
SspMI CTAG 5 cut(s) 33, 194, 281, 299, 486
StuI AGGCCT 1 cut(s) 684
StyI CCWWGG 3 cut(s) 360, 376, 583
TaaI ACNGT 3 cut(s) 95, 228, 654
TaqI TCGA 3 cut(s) 5, 338, 399
TasI AATT 4 cut(s) 179, 334, 436, 675
TatI WGTACW 3 cut(s) 288, 687, 693
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 1 cut(s) 523
TseI GCWGC 2 cut(s) 56, 525
TspDTI ATGAA 2 cut(s) 223, 628
TspRI CASTG 1 cut(s) 523
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 199, 262
XapI RAATTY 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 2 cut(s) 175, 694
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 5 cut(s) 33, 194, 281, 299, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.