Rh5BG071700

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0014688
Physical Location & Seq
Forward (+)
5849781 .. 5852037
2257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG071700.1

Sequence Viewer

Length: 1041 bp
ATGTCGATTGGTAGCAGTAATACTGGGGAACCTAGCGGGGGTCGCCATGCCTGCGCTGCGTGTCGGCACCAGAGAAAAAGGTGCGAAGAAGACTGTGTGATGGCCCCTTACTTCACGGCGGATAAGGAAGAAGAGTTTAAAGCTGTGCACAAACTTTTCGGCGTGAGCAACATGTCAAAATTGCTTAAGCAACTAGAGGACCAAAATCACAGGGCTCAGGCCGTACAGTCTTTCATATGGGAAGCCTATATGTGGAAGCAGGACCCCATTGCCGGCCCTCTAGGCAAGTACAAGGCTCTAGAAGAGGAGTGTGAATATCTCAGAAACCTACTGAATTCGAGCCGGCCGGAACAGGAATCCATGGGGGTTGTTGACCAAGGAAATACCAAAGGCGAAGTCGAAGGAGGAGGAGTACCCATTTATGGAAGGGGTCTGAATTATGGTTATACTGATCAAACTTTAGGGTTAGATCATGGGTGTACGACTAGTTTTACTTCTCTACTACAAGGGCAAGACACTGAAAGCAGCAAGGGTTTAGCAGATTGTGTTTCTGTGGCTTCTGCTTATCAAATGCCTATTTCCCAAGGGAGAGGCTTTCAAGACCATAGAAGAATTGGCATGGAGTCATTCAACTTTTTTCATCAGTACCCAACAGTTCAAGGAGCTAATGTCCATAATTATAGGCCTGTACAAGTACAAGGAAGAGGGAGAGGAACTGGAGGAATAATGATAGATTGTGCAAGAACCTGCAATGGGCTTGTAGTTTATGACCCTCATACTGGGCAGGTACAACAAAGAGAGATAGGGGCAATGGGGCCCCAAGTTGGTCCTATTCTTAGTAGCCATAGGAGAGGTACGAGTCAAAGATTTTCACCTTATGACCAGCATAATCCTATTCAAGTGCCAAGACAAGCGATGAGGCGGCAAGATCAAAACCAGCAAAGTTTTCCAGCACAACATCAGTGGGATACTAATAGCCAGAGTTGCGACAATTTTCAAGATGCAGAACATCTCAATGAAGTGAAGAATGAAAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

346

Amino Acids

38.65

Weight (kDa)

6.35

Isoelectric Point (pI)

53.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 17 - 112 7.3e-32 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 755, 775
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 3 cut(s) 36, 119, 922
AcoI YGGCCR 1 cut(s) 344
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 9 cut(s) 225, 290, 414, 481, 647, 690, 696, 789, 856
AfiI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 753, 779, 824
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 5 cut(s) 599, 631, 659, 899, 998
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 2 cut(s) 143, 665
AluI AGCT 2 cut(s) 143, 665
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AoxI GGCC 6 cut(s) 102, 219, 274, 344, 683, 815
ApaI GGGCCC 1 cut(s) 819
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 56, 525
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 7 cut(s) 103, 199, 262, 275, 815, 816, 827
AsuHPI GGTGA 1 cut(s) 864
AvaII GGWCC 3 cut(s) 199, 262, 827
BaeGI GKGCMC 2 cut(s) 150, 819
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 217, 819
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 2 cut(s) 43, 537
BccI CCATC 1 cut(s) 94
BceAI ACGGC 2 cut(s) 132, 206
BciVI GTATCC 1 cut(s) 961
BclI TGATCA 1 cut(s) 451
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 5 cut(s) 33, 194, 281, 299, 486
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 755, 775
BfuI GTATCC 1 cut(s) 961
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 3 cut(s) 57, 526, 923
BlsI GCNGC 3 cut(s) 58, 527, 924
Bme18I GGWCC 3 cut(s) 199, 262, 827
BmgT120I GGNCC 7 cut(s) 103, 199, 262, 275, 815, 816, 827
BmiI GGNNCC 7 cut(s) 30, 68, 105, 264, 816, 817, 818
BmrI ACTGGG 2 cut(s) 33, 789
BmsI GCATC 1 cut(s) 991
BmuI ACTGGG 2 cut(s) 33, 789
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 216
BsaJI CCNNGG 3 cut(s) 360, 376, 583
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 654, 684
Bsc4I CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 753, 779, 824
Bse118I RCCGGY 2 cut(s) 272, 342
Bse1I ACTGG 3 cut(s) 28, 721, 784
Bse3DI GCAATG 3 cut(s) 267, 757, 816
BseDI CCNNGG 3 cut(s) 360, 376, 583
BseLI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 753, 779, 824
BseMI GCAATG 3 cut(s) 267, 757, 816
BseMII CTCAG 2 cut(s) 230, 334
BseNI ACTGG 3 cut(s) 28, 721, 784
BseRI GAGGAG 3 cut(s) 320, 420, 423
BseSI GKGCMC 2 cut(s) 150, 819
BseX3I CGGCCG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 43, 537
Bsh1285I CGRYCG 1 cut(s) 347
BshFI GGCC 6 cut(s) 104, 221, 276, 346, 685, 817
BshNI GGYRCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 347
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 3 cut(s) 273, 343, 347
BslI CCNNNNNNNGG 7 cut(s) 38, 252, 272, 422, 753, 779, 824
BsnI GGCC 6 cut(s) 104, 221, 276, 346, 685, 817
Bsp120I GGGCCC 1 cut(s) 815
Bsp1286I GDGCHC 3 cut(s) 150, 217, 819
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 3 cut(s) 451, 469, 928
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 36, 119, 922
BspANI GGCC 6 cut(s) 104, 221, 276, 346, 685, 817
BspCNI CTCAG 2 cut(s) 229, 333
BspLI GGNNCC 7 cut(s) 30, 68, 105, 264, 816, 817, 818
BspMI ACCTGC 2 cut(s) 755, 775
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 3 cut(s) 267, 757, 816
BsrFI RCCGGY 2 cut(s) 272, 342
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 3 cut(s) 28, 721, 784
BssAI RCCGGY 2 cut(s) 272, 342
BssECI CCNNGG 3 cut(s) 360, 376, 583
BssMI GATC 3 cut(s) 451, 469, 928
BssT1I CCWWGG 3 cut(s) 360, 376, 583
Bst4CI ACNGT 3 cut(s) 95, 228, 655
Bst6I CTCTTC 3 cut(s) 126, 297, 697
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 688
BstC8I GCNNGC 3 cut(s) 52, 274, 344
BstDEI CTNAG 3 cut(s) 216, 320, 836
BstDSI CCRYGG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 3 cut(s) 454, 472, 931
BstMBI GATC 3 cut(s) 451, 469, 928
BstMCI CGRYCG 1 cut(s) 347
BstMWI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 984
BstNSI RCATGY 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 150, 819
BstV1I GCAGC 2 cut(s) 43, 537
BstV2I GAAGAC 1 cut(s) 96
BstZI CGGCCG 1 cut(s) 344
BsuI GTATCC 1 cut(s) 961
BsuRI GGCC 6 cut(s) 104, 221, 276, 346, 685, 817
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 929
BtsIMutI CAGTG 2 cut(s) 516, 968
BveI ACCTGC 2 cut(s) 755, 775
Cac8I GCNNGC 3 cut(s) 52, 274, 344
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 2 cut(s) 272, 342
Cfr13I GGNCC 7 cut(s) 103, 199, 262, 275, 815, 816, 827
Csp6I GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 855
CspCI CAANNNNNGTGG 2 cut(s) 944, 979
CviAII CATG 6 cut(s) 47, 172, 361, 473, 619, 1038
CviQI GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 855
DdeI CTNAG 3 cut(s) 216, 320, 836
DpnI GATC 3 cut(s) 453, 471, 930
DpnII GATC 3 cut(s) 451, 469, 928
DraI TTTAAA 1 cut(s) 139
EaeI YGGCCR 1 cut(s) 344
EagI CGGCCG 1 cut(s) 344
Eam1104I CTCTTC 3 cut(s) 126, 297, 697
EarI CTCTTC 3 cut(s) 126, 297, 697
EciI GGCGGA 1 cut(s) 134
EclXI CGGCCG 1 cut(s) 344
Eco130I CCWWGG 3 cut(s) 360, 376, 583
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 217, 819
Eco47I GGWCC 3 cut(s) 199, 262, 827
Eco52I CGGCCG 1 cut(s) 344
EcoO109I RGGNCCY 3 cut(s) 262, 815, 816
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 3 cut(s) 360, 376, 583
EcoT38I GRGCYC 2 cut(s) 217, 819
ErhI CCWWGG 3 cut(s) 360, 376, 583
FaeI CATG 6 cut(s) 50, 175, 364, 476, 622, 1041
FatI CATG 6 cut(s) 46, 171, 360, 472, 618, 1037
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 3 cut(s) 57, 526, 923
FriOI GRGCYC 2 cut(s) 217, 819
Fsp4HI GCNGC 3 cut(s) 57, 526, 923
FspBI CTAG 5 cut(s) 33, 194, 281, 299, 486
GlaI GCGC 1 cut(s) 55
GluI GCNGC 3 cut(s) 57, 526, 923
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 6 cut(s) 104, 221, 276, 346, 685, 817
HapII CCGG 3 cut(s) 273, 343, 347
HhaI GCGC 1 cut(s) 56
Hin1II CATG 6 cut(s) 50, 175, 364, 476, 622, 1041
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 3 cut(s) 356, 623, 859
HpaII CCGG 3 cut(s) 273, 343, 347
HphI GGTGA 1 cut(s) 864
Hpy166II GTNNAC 3 cut(s) 148, 373, 480
Hpy188I TCNGA 2 cut(s) 323, 435
Hpy188III TCNNGA 3 cut(s) 299, 599, 998
Hpy8I GTNNAC 3 cut(s) 148, 373, 480
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 3 cut(s) 95, 228, 655
HpyCH4V TGCA 4 cut(s) 148, 740, 750, 1004
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 984
HpyF3I CTNAG 3 cut(s) 216, 320, 836
Hsp92II CATG 6 cut(s) 50, 175, 364, 476, 622, 1041
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 2 cut(s) 272, 342
KroNI GCCGGC 2 cut(s) 274, 344
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 3 cut(s) 451, 469, 928
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 2 cut(s) 43, 537
LweI GCATC 1 cut(s) 991
MaeI CTAG 5 cut(s) 33, 194, 281, 299, 486
MalI GATC 3 cut(s) 453, 471, 930
MboI GATC 3 cut(s) 451, 469, 928
MboII GAAGA 8 cut(s) 98, 101, 140, 143, 314, 621, 714, 1036
MhlI GDGCHC 3 cut(s) 150, 217, 819
MluCI AATT 6 cut(s) 179, 334, 436, 612, 676, 991
MlyI GAGTC 2 cut(s) 632, 868
MroNI GCCGGC 2 cut(s) 272, 342
MseI TTAA 2 cut(s) 138, 186
MslI CAYNNNNRTG 1 cut(s) 1014
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 3 cut(s) 273, 343, 347
MwoI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 984
NaeI GCCGGC 2 cut(s) 274, 344
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 236
NdeII GATC 3 cut(s) 451, 469, 928
NgoMIV GCCGGC 2 cut(s) 272, 342
NlaIII CATG 6 cut(s) 50, 175, 364, 476, 622, 1041
NlaIV GGNNCC 7 cut(s) 30, 68, 105, 264, 816, 817, 818
NspI RCATGY 1 cut(s) 175
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 2 cut(s) 274, 344
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 3 cut(s) 58, 527, 924
PleI GAGTC 2 cut(s) 631, 867
PpsI GAGTC 2 cut(s) 631, 867
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 7 cut(s) 30, 68, 105, 264, 816, 817, 818
PspOMI GGGCCC 1 cut(s) 815
PspPI GGNCC 7 cut(s) 103, 199, 262, 275, 815, 816, 827
PspPPI RGGWCCY 1 cut(s) 262
RsaI GTAC 9 cut(s) 225, 290, 414, 481, 647, 690, 696, 789, 856
RsaNI GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 855
RseI CAYNNNNRTG 1 cut(s) 1014
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 3 cut(s) 57, 526, 923
Sau3AI GATC 3 cut(s) 451, 469, 928
Sau96I GGNCC 7 cut(s) 103, 199, 262, 275, 815, 816, 827
SchI GAGTC 2 cut(s) 632, 868
SduI GDGCHC 3 cut(s) 150, 217, 819
SetI ASST 9 cut(s) 34, 83, 145, 330, 667, 749, 789, 856, 877
SfaNI GCATC 1 cut(s) 991
SinI GGWCC 3 cut(s) 199, 262, 827
SmiMI CAYNNNNRTG 1 cut(s) 1014
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 6 cut(s) 179, 334, 436, 612, 676, 991
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 3 cut(s) 36, 119, 922
SspMI CTAG 5 cut(s) 33, 194, 281, 299, 486
StuI AGGCCT 1 cut(s) 685
StyI CCWWGG 3 cut(s) 360, 376, 583
TaaI ACNGT 3 cut(s) 95, 228, 655
TaqI TCGA 3 cut(s) 5, 338, 399
TasI AATT 6 cut(s) 179, 334, 436, 612, 676, 991
TatI WGTACW 3 cut(s) 288, 688, 694
TauI GCSGC 1 cut(s) 925
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 2 cut(s) 523, 968
TseI GCWGC 2 cut(s) 56, 525
TspDTI ATGAA 3 cut(s) 223, 629, 1032
TspRI CASTG 2 cut(s) 523, 968
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 3 cut(s) 199, 262, 827
XapI RAATTY 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 5 cut(s) 33, 194, 281, 299, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.