Rmu_sc0034758.1_g000001

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034758.1
OG0014688
Physical Location & Seq
Reverse (-)
1 .. 2097
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034758.1_g000001.1.cds

Sequence Viewer

Length: 757 bp
atgtggaagcaggaacccattgccggccctctaggcaagtacaaggctctagaagaggagtgtgaatatctcagaaacctactgaattcgtgccggccggaacaggaatccatgggggttgttgaccaaggaaataccaaaggcgaagtcgaaggaggaggagtacccatttatggaaggggtctgaattatggttatgctgatcaaactttagggttagatcatgggtgtacgactagttttacttctctactacaagggcaagacactgaaagcagcaagggtctagcagattgtgtttctgtggcttctgcttatcaaatgcctatttcccaatcccaagggagaggctttcaagaccatagaagaattggcatggagtcattcaacttttttcatcagtacccaacagttcaaggagctaatgtccataattataggcctgtacaagtacaaggaagagggagaggaactggaggaataatgatagattgtgcaagaacctgcaatgggcttgtagtttatgaccctcatactgggcaggtacaacaaagagaaataggggcaatggggccccaagttggtcctattcttagtagccataggagaggtacgagtcaaagattttcaccttatgatcagcttaaccctattcaagtgccaagacaagcgatgaggctgcaagatcaaaaccagcaaagttttccagcacaacatcagtgggatactaatagccagagttgcgacaattttcaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

252

Amino Acids

27.92

Weight (kDa)

6.15

Isoelectric Point (pI)

49.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 512, 532
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 1 cut(s) 85
AfaI GTAC 8 cut(s) 41, 165, 232, 404, 447, 453, 546, 613
AfiI CCNNNNNNNGG 5 cut(s) 23, 173, 510, 536, 581
AgsI TTSAA 5 cut(s) 356, 388, 416, 656, 755
AhlI ACTAGT 1 cut(s) 236
AluBI AGCT 2 cut(s) 422, 643
AluI AGCT 2 cut(s) 422, 643
AoxI GGCC 4 cut(s) 25, 95, 440, 572
ApaI GGGCCC 1 cut(s) 576
ApeKI GCWGC 2 cut(s) 276, 679
ApoI RAATTY 1 cut(s) 85
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspS9I GGNCC 4 cut(s) 26, 572, 573, 584
AsuHPI GGTGA 1 cut(s) 621
AvaII GGWCC 1 cut(s) 584
BaeGI GKGCMC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 576
BbvI GCAGC 2 cut(s) 288, 666
BcgI CGANNNNNNTGC 2 cut(s) 661, 695
BciVI GTATCC 1 cut(s) 718
BclI TGATCA 2 cut(s) 202, 637
BcuI ACTAGT 1 cut(s) 236
BfaI CTAG 4 cut(s) 32, 50, 237, 287
BfuAI ACCTGC 2 cut(s) 512, 532
BfuI GTATCC 1 cut(s) 718
BglI GCCNNNNNGGC 1 cut(s) 33
BisI GCNGC 2 cut(s) 277, 680
BlsI GCNGC 2 cut(s) 278, 681
Bme18I GGWCC 1 cut(s) 584
BmgT120I GGNCC 4 cut(s) 26, 572, 573, 584
BmiI GGNNCC 4 cut(s) 15, 573, 574, 575
BmrI ACTGGG 1 cut(s) 546
BmuI ACTGGG 1 cut(s) 546
BpmI CTGGAG 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 111, 127, 340
BsaXI ACNNNNNCTCC 4 cut(s) 147, 177, 411, 441
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 173, 510, 536, 581
Bse118I RCCGGY 2 cut(s) 23, 93
Bse1I ACTGG 2 cut(s) 478, 541
Bse3DI GCAATG 3 cut(s) 18, 514, 573
BseDI CCNNGG 3 cut(s) 111, 127, 340
BseLI CCNNNNNNNGG 5 cut(s) 23, 173, 510, 536, 581
BseMI GCAATG 3 cut(s) 18, 514, 573
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 478, 541
BseRI GAGGAG 3 cut(s) 71, 171, 174
BseSI GKGCMC 1 cut(s) 576
BseX3I CGGCCG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 288, 666
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 4 cut(s) 27, 97, 442, 574
BsiEI CGRYCG 1 cut(s) 98
BsiSI CCGG 3 cut(s) 24, 94, 98
BslI CCNNNNNNNGG 5 cut(s) 23, 173, 510, 536, 581
BsnI GGCC 4 cut(s) 27, 97, 442, 574
Bsp120I GGGCCC 1 cut(s) 572
Bsp1286I GDGCHC 1 cut(s) 576
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 4 cut(s) 202, 220, 637, 685
Bsp19I CCATGG 1 cut(s) 111
BspANI GGCC 4 cut(s) 27, 97, 442, 574
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 15, 573, 574, 575
BspMI ACCTGC 2 cut(s) 512, 532
BsrDI GCAATG 3 cut(s) 18, 514, 573
BsrFI RCCGGY 2 cut(s) 23, 93
BsrGI TGTACA 1 cut(s) 445
BsrI ACTGG 2 cut(s) 478, 541
BssAI RCCGGY 2 cut(s) 23, 93
BssECI CCNNGG 3 cut(s) 111, 127, 340
BssMI GATC 4 cut(s) 202, 220, 637, 685
BssT1I CCWWGG 3 cut(s) 111, 127, 340
Bst4CI ACNGT 1 cut(s) 412
Bst6I CTCTTC 2 cut(s) 48, 454
BstAUI TGTACA 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 25, 95
BstDEI CTNAG 2 cut(s) 71, 593
BstDSI CCRYGG 1 cut(s) 111
BstKTI GATC 4 cut(s) 205, 223, 640, 688
BstMBI GATC 4 cut(s) 202, 220, 637, 685
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 33, 741
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 2 cut(s) 288, 666
BstZI CGGCCG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 718
BsuRI GGCC 4 cut(s) 27, 97, 442, 574
BtgI CCRYGG 1 cut(s) 111
BtgZI GCGATG 1 cut(s) 686
BtsIMutI CAGTG 2 cut(s) 267, 725
BveI ACCTGC 2 cut(s) 512, 532
Cac8I GCNNGC 2 cut(s) 25, 95
Cfr10I RCCGGY 2 cut(s) 23, 93
Cfr13I GGNCC 4 cut(s) 26, 572, 573, 584
Csp6I GTAC 8 cut(s) 40, 164, 231, 403, 446, 452, 545, 612
CspCI CAANNNNNGTGG 2 cut(s) 701, 736
CviAII CATG 3 cut(s) 112, 224, 376
CviQI GTAC 8 cut(s) 40, 164, 231, 403, 446, 452, 545, 612
DdeI CTNAG 2 cut(s) 71, 593
DpnI GATC 4 cut(s) 204, 222, 639, 687
DpnII GATC 4 cut(s) 202, 220, 637, 685
EaeI YGGCCR 1 cut(s) 95
EagI CGGCCG 1 cut(s) 95
Eam1104I CTCTTC 2 cut(s) 48, 454
EarI CTCTTC 2 cut(s) 48, 454
EclXI CGGCCG 1 cut(s) 95
Eco130I CCWWGG 3 cut(s) 111, 127, 340
Eco147I AGGCCT 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 576
Eco47I GGWCC 1 cut(s) 584
Eco52I CGGCCG 1 cut(s) 95
EcoO109I RGGNCCY 2 cut(s) 572, 573
EcoRI GAATTC 1 cut(s) 85
EcoT14I CCWWGG 3 cut(s) 111, 127, 340
EcoT38I GRGCYC 1 cut(s) 576
ErhI CCWWGG 3 cut(s) 111, 127, 340
FaeI CATG 3 cut(s) 115, 227, 379
FatI CATG 3 cut(s) 111, 223, 375
FbaI TGATCA 2 cut(s) 202, 637
Fnu4HI GCNGC 2 cut(s) 277, 680
FriOI GRGCYC 1 cut(s) 576
Fsp4HI GCNGC 2 cut(s) 277, 680
FspBI CTAG 4 cut(s) 32, 50, 237, 287
GluI GCNGC 2 cut(s) 277, 680
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 4 cut(s) 27, 97, 442, 574
HapII CCGG 3 cut(s) 24, 94, 98
Hin1II CATG 3 cut(s) 115, 227, 379
HincII GTYRAC 1 cut(s) 124
HindII GTYRAC 1 cut(s) 124
HinfI GANTC 3 cut(s) 107, 380, 616
HpaII CCGG 3 cut(s) 24, 94, 98
HphI GGTGA 1 cut(s) 621
Hpy166II GTNNAC 2 cut(s) 124, 231
Hpy188I TCNGA 2 cut(s) 74, 186
Hpy188III TCNNGA 2 cut(s) 50, 356
Hpy8I GTNNAC 2 cut(s) 124, 231
HpyAV CCTTC 2 cut(s) 146, 171
HpyCH4III ACNGT 1 cut(s) 412
HpyCH4V TGCA 3 cut(s) 497, 507, 682
HpyF10VI GCNNNNNNNGC 2 cut(s) 33, 741
HpyF3I CTNAG 2 cut(s) 71, 593
Hsp92II CATG 3 cut(s) 115, 227, 379
KroI GCCGGC 2 cut(s) 23, 93
KroNI GCCGGC 2 cut(s) 25, 95
Ksp22I TGATCA 2 cut(s) 202, 637
Kzo9I GATC 4 cut(s) 202, 220, 637, 685
LmnI GCTCC 1 cut(s) 419
Lsp1109I GCAGC 2 cut(s) 288, 666
MaeI CTAG 4 cut(s) 32, 50, 237, 287
MalI GATC 4 cut(s) 204, 222, 639, 687
MboI GATC 4 cut(s) 202, 220, 637, 685
MboII GAAGA 3 cut(s) 65, 378, 471
MhlI GDGCHC 1 cut(s) 576
MluCI AATT 5 cut(s) 85, 187, 369, 433, 748
MlyI GAGTC 2 cut(s) 389, 625
MroNI GCCGGC 2 cut(s) 23, 93
MseI TTAA 1 cut(s) 645
MspI CCGG 3 cut(s) 24, 94, 98
MwoI GCNNNNNNNGC 2 cut(s) 33, 741
NaeI GCCGGC 2 cut(s) 25, 95
NcoI CCATGG 1 cut(s) 111
NdeII GATC 4 cut(s) 202, 220, 637, 685
NgoMIV GCCGGC 2 cut(s) 23, 93
NlaIII CATG 3 cut(s) 115, 227, 379
NlaIV GGNNCC 4 cut(s) 15, 573, 574, 575
PceI AGGCCT 1 cut(s) 442
PdiI GCCGGC 2 cut(s) 25, 95
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 2 cut(s) 278, 681
PleI GAGTC 2 cut(s) 388, 624
PpsI GAGTC 2 cut(s) 388, 624
PspN4I GGNNCC 4 cut(s) 15, 573, 574, 575
PspOMI GGGCCC 1 cut(s) 572
PspPI GGNCC 4 cut(s) 26, 572, 573, 584
RsaI GTAC 8 cut(s) 41, 165, 232, 404, 447, 453, 546, 613
RsaNI GTAC 8 cut(s) 40, 164, 231, 403, 446, 452, 545, 612
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 2 cut(s) 277, 680
Sau3AI GATC 4 cut(s) 202, 220, 637, 685
Sau96I GGNCC 4 cut(s) 26, 572, 573, 584
SchI GAGTC 2 cut(s) 389, 625
SduI GDGCHC 1 cut(s) 576
SetI ASST 7 cut(s) 81, 424, 506, 546, 613, 634, 645
SinI GGWCC 1 cut(s) 584
SpeI ACTAGT 1 cut(s) 236
Sse9I AATT 5 cut(s) 85, 187, 369, 433, 748
SseBI AGGCCT 1 cut(s) 442
SspMI CTAG 4 cut(s) 32, 50, 237, 287
StuI AGGCCT 1 cut(s) 442
StyI CCWWGG 3 cut(s) 111, 127, 340
TaaI ACNGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 150
TasI AATT 5 cut(s) 85, 187, 369, 433, 748
TatI WGTACW 3 cut(s) 39, 445, 451
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 2 cut(s) 274, 725
TseI GCWGC 2 cut(s) 276, 679
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 2 cut(s) 274, 725
VpaK11BI GGWCC 1 cut(s) 584
XapI RAATTY 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 49
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
XspI CTAG 4 cut(s) 32, 50, 237, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.