Rorug04G0445000

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0014688
Physical Location & Seq
Reverse (-)
60137094 .. 60137543
450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0445000.1

Sequence Viewer

Length: 450 bp
ATGGGTTCCTCCGGTTTGATCAGAGAGAACTGGGGGTTGATCCAACAAGCCAAGTCGTTGTTCGGGTCGGATCAGCCCGACCCGGAAACAAGACCGCTCGAGTTCATCAACCGGAACTTCTCCATTTTTGACATCGGCATCATTGCCGGCGTGCAGGAAGAGGATCATAGCTCGTACAATGACGACAAGAAACATGTTTTTGGTTCTAGCAAGAAGAAGAACGGAGCTCCGAACCCAAACCCAGACTTCGTAGATTCCGACTGCCAGATGAAAAGAGCGCCGAAGAAACGGGGCCGGAAACTCGGGCTGGGCCGAGACACGCCGCTCAACCACGTGGAGGCGGAGCGGCAGCGGCGGGAGAAGCTCACCTTGCATGGGCGGCGTTGGAAGCGAGGGAGTGAGCCCGGAAGAAGGAAGAAGAAAGAGATAAAAATGAAGGAAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

149

Amino Acids

17.12

Weight (kDa)

10.08

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 97, 325, 346
AciI CCGC 7 cut(s) 95, 323, 341, 346, 352, 355, 379
AclWI GGATC 3 cut(s) 34, 78, 171
AcvI CACGTG 1 cut(s) 334
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 337, 375, 411
AflIII ACRYGT 1 cut(s) 193
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 171, 227, 364
AluI AGCT 3 cut(s) 171, 227, 364
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 3 cut(s) 34, 78, 171
Ama87I CYCGRG 2 cut(s) 98, 302
AoxI GGCC 2 cut(s) 292, 310
ApeKI GCWGC 1 cut(s) 349
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 292, 310
AsuC2I CCSGG 2 cut(s) 83, 405
AsuHPI GGTGA 1 cut(s) 358
AvaI CYCGRG 2 cut(s) 98, 302
BanII GRGCYC 2 cut(s) 229, 405
BbrPI CACGTG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 361
BclI TGATCA 1 cut(s) 18
BcnI CCSGG 2 cut(s) 83, 405
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 5 cut(s) 323, 347, 350, 353, 380
BlsI GCNGC 5 cut(s) 324, 348, 351, 354, 381
Bme1390I CCNGG 2 cut(s) 83, 405
BmeT110I CYCGRG 2 cut(s) 98, 302
BmgT120I GGNCC 2 cut(s) 292, 310
BmiI GGNNCC 2 cut(s) 7, 293
BmrFI CCNGG 2 cut(s) 83, 405
BmrI ACTGGG 1 cut(s) 40
BmsI GCATC 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 40
BpuMI CCSGG 2 cut(s) 83, 405
BsaAI YACGTR 1 cut(s) 334
BsaWI WCCGGW 2 cut(s) 11, 111
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 375, 411
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 1 cut(s) 35
Bse3DI GCAATG 1 cut(s) 141
BseLI CCNNNNNNNGG 3 cut(s) 337, 375, 411
BseMI GCAATG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 35
BseXI GCAGC 1 cut(s) 361
BseYI CCCAGC 1 cut(s) 307
BsgI GTGCAG 1 cut(s) 173
BshFI GGCC 2 cut(s) 294, 312
BsiHKAI GWGCWC 1 cut(s) 229
BsiHKCI CYCGRG 2 cut(s) 98, 302
BsiSI CCGG 6 cut(s) 12, 83, 112, 147, 295, 405
BslI CCNNNNNNNGG 3 cut(s) 337, 375, 411
BsmAI GTCTC 1 cut(s) 309
BsnI GGCC 2 cut(s) 294, 312
BsoBI CYCGRG 2 cut(s) 98, 302
Bsp1286I GDGCHC 2 cut(s) 229, 405
Bsp143I GATC 4 cut(s) 18, 39, 70, 163
BspACI CCGC 7 cut(s) 95, 323, 341, 346, 352, 355, 379
BspANI GGCC 2 cut(s) 294, 312
BspLI GGNNCC 2 cut(s) 7, 293
BspPI GGATC 3 cut(s) 34, 78, 171
BsrBI CCGCTC 3 cut(s) 97, 325, 346
BsrDI GCAATG 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 1 cut(s) 35
BssAI RCCGGY 1 cut(s) 146
BssMI GATC 4 cut(s) 18, 39, 70, 163
Bst6I CTCTTC 1 cut(s) 153
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 148, 152
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 4 cut(s) 21, 42, 73, 166
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 4 cut(s) 18, 39, 70, 163
BstMWI GCNNNNNNNGC 5 cut(s) 352, 361, 370, 379, 388
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 81, 403
BstV1I GCAGC 1 cut(s) 361
BsuRI GGCC 2 cut(s) 294, 312
Cac8I GCNNGC 2 cut(s) 148, 152
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 2 cut(s) 292, 310
Csp6I GTAC 1 cut(s) 175
CviAII CATG 2 cut(s) 194, 374
CviJI RGCY 9 cut(s) 50, 76, 171, 227, 294, 307, 312, 364, 403
CviKI_1 RGCY 9 cut(s) 50, 76, 171, 227, 294, 307, 312, 364, 403
CviQI GTAC 1 cut(s) 175
DpnI GATC 4 cut(s) 20, 41, 72, 165
DpnII GATC 4 cut(s) 18, 39, 70, 163
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 356
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 229, 405
Eco53kI GAGCTC 1 cut(s) 227
Eco72I CACGTG 1 cut(s) 334
Eco88I CYCGRG 2 cut(s) 98, 302
EcoICRI GAGCTC 1 cut(s) 227
EcoT38I GRGCYC 2 cut(s) 229, 405
FaeI CATG 2 cut(s) 197, 377
FaiI YATR 3 cut(s) 168, 195, 375
FalI AAGNNNNNCTT 2 cut(s) 353, 385
FatI CATG 2 cut(s) 193, 373
FauI CCCGC 1 cut(s) 348
FbaI TGATCA 1 cut(s) 18
Fnu4HI GCNGC 5 cut(s) 323, 347, 350, 353, 380
FriOI GRGCYC 2 cut(s) 229, 405
Fsp4HI GCNGC 5 cut(s) 323, 347, 350, 353, 380
FspBI CTAG 1 cut(s) 207
GlaI GCGC 1 cut(s) 279
GluI GCNGC 5 cut(s) 323, 347, 350, 353, 380
GsaI CCCAGC 1 cut(s) 311
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 294, 312
HapII CCGG 6 cut(s) 12, 83, 112, 147, 295, 405
HhaI GCGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 197, 377
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 1 cut(s) 254
HpaII CCGG 6 cut(s) 12, 83, 112, 147, 295, 405
HphI GGTGA 1 cut(s) 358
Hpy188I TCNGA 4 cut(s) 23, 70, 231, 259
HpyAV CCTTC 2 cut(s) 405, 430
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 154, 373
HpyF10VI GCNNNNNNNGC 5 cut(s) 352, 361, 370, 379, 388
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 2 cut(s) 197, 377
HspAI GCGC 1 cut(s) 278
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 18
Kzo9I GATC 4 cut(s) 18, 39, 70, 163
LmnI GCTCC 3 cut(s) 224, 232, 343
Lsp1109I GCAGC 1 cut(s) 361
LweI GCATC 1 cut(s) 147
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 333
MalI GATC 4 cut(s) 20, 41, 72, 165
MbiI CCGCTC 3 cut(s) 97, 325, 346
MboI GATC 4 cut(s) 18, 39, 70, 163
MboII GAAGA 7 cut(s) 170, 226, 229, 295, 420, 427, 430
MhlI GDGCHC 2 cut(s) 229, 405
MmeI TCCRAC 4 cut(s) 48, 67, 282, 365
MnlI CCTC 4 cut(s) 19, 154, 331, 386
MroNI GCCGGC 1 cut(s) 146
MspA1I CMGCKG 1 cut(s) 352
MspI CCGG 6 cut(s) 12, 83, 112, 147, 295, 405
MspR9I CCNGG 2 cut(s) 83, 405
MwoI GCNNNNNNNGC 5 cut(s) 352, 361, 370, 379, 388
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 2 cut(s) 83, 405
NdeII GATC 4 cut(s) 18, 39, 70, 163
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 197, 377
NlaIV GGNNCC 2 cut(s) 7, 293
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 197
PaeR7I CTCGAG 1 cut(s) 98
PciI ACATGT 1 cut(s) 193
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PdiI GCCGGC 1 cut(s) 148
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 5 cut(s) 324, 348, 351, 354, 381
PmaCI CACGTG 1 cut(s) 334
PmlI CACGTG 1 cut(s) 334
Ppu21I YACGTR 1 cut(s) 334
PscI ACATGT 1 cut(s) 193
Psp124BI GAGCTC 1 cut(s) 229
PspCI CACGTG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 7, 293
PspPI GGNCC 2 cut(s) 292, 310
PspXI VCTCGAGB 1 cut(s) 98
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
SacI GAGCTC 1 cut(s) 229
SatI GCNGC 5 cut(s) 323, 347, 350, 353, 380
Sau3AI GATC 4 cut(s) 18, 39, 70, 163
Sau96I GGNCC 2 cut(s) 292, 310
ScrFI CCNGG 2 cut(s) 83, 405
SduI GDGCHC 2 cut(s) 229, 405
SetI ASST 5 cut(s) 173, 229, 336, 366, 371
SfaNI GCATC 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 98
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SsiI CCGC 7 cut(s) 95, 323, 341, 346, 352, 355, 379
SspMI CTAG 1 cut(s) 207
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 2 cut(s) 81, 403
TaiI ACGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 99
TauI GCSGC 4 cut(s) 325, 349, 355, 382
TfiI GAWTC 1 cut(s) 254
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 94, 284, 449
TspGWI ACGGA 1 cut(s) 237
XceI RCATGY 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.