RLG00000031681

Pathogenesis-related genes transcriptional activator PTI5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0014688
Physical Location & Seq
Forward (+)
7327612 .. 7329382
1771 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031681

Sequence Viewer

Length: 1044 bp
ATGTCGATTGGTAGCAGTAATACTGGGGAACCTAGCGGGGGTCGCCATGCCTGCGCTGCGTGTCGGCACCAGAGAAAAAGGTGCGAAGAAGACTGTGTGATGGCCCCTTACTTCACGGCGGATAAGGAAGAAGAGTTTAAAGCTGTGCACAAACTTTTCGGAGTGAGCAACATGTCAAAATTGCTTAAGCAACTACAGAACCAAAATCACAGGGCTCAGGCCGTACAGTCTTTCATATGGGAAGCCTATATGTGGAAGCAGGACCCCATTGCCGGCCCTCTAGGCAAGTACAAGGCTCTAGAAGAGGAGTGTGAATATCTCAGAAACCTACTGAATTCGAGCCGCCCGGAACAGGAATCCATGGGGGTTGTTGAGCAAGGAAATACCAAAGGCGAAGTCGAAGGAGGAGGTGTACCCATTTATGGAAGGGATCTGAATTATGGTTATACTGATCAAACTTTAGGGTTAGATCATGGGTGTACGACTAGTTTTACTTCTCTACTACAAGGGCAAGACACTGAAAGCAGCAAGGGTTTAGCAGATTGTGTTTCTGTGGCTTCTGCTTATCAAATGCCTATTTCCCAAGGGAGAGGCTTTCAAGACCATAGAAGAATTGGCATGGAGTCATTCAACTTTTTTCATCAGTACCCAACAGTTCAAGGAGCCAATGTCCATAATTATAGGCCTGTACAAGTACAAGGAAGAGGGAGAGGAACTGGAGGAATAATGATAGATTGTGCAAGAACCTGCAATGGGCTTGTAGTTTATGACCCTCATACTGGGCAGGTACAACAACAAAGAGAAATAGGGGCAATGGGGCCCCAAGTTGGTCCTATTCTTAGTAGCCATAGGAGAGGTACGAGTCAAAGATTTTCACCTTATGACCAGCATAACCCTATTCAAGTGCCAAGACAAGCGATGAGGCAGCAAGATCAAAACCAGCAAAGTTTTCCAGCACAACATCAGTGGGATACTAATAGCCAGAGTTGCGACAATTTTCAAGATGCAGAGCATCTCAATGAAGTGAAGAATGAAAAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
AP2

Protein Analysis

348

Amino Acids

38.82

Weight (kDa)

6.35

Isoelectric Point (pI)

54.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 17 - 112 1.1e-31 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 755, 775
AccB1I GGYRCC 1 cut(s) 66
AciI CCGC 3 cut(s) 36, 119, 343
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 1 cut(s) 334
AfaI GTAC 9 cut(s) 225, 290, 414, 481, 647, 690, 696, 789, 859
AfiI CCNNNNNNNGG 8 cut(s) 38, 252, 272, 352, 422, 753, 779, 827
AflII CTTAAG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 5 cut(s) 599, 631, 659, 902, 1001
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw21I GWGCWC 1 cut(s) 150
Alw44I GTGCAC 1 cut(s) 146
AlwI GGATC 1 cut(s) 438
AoxI GGCC 5 cut(s) 102, 219, 274, 683, 818
ApaI GGGCCC 1 cut(s) 822
ApaLI GTGCAC 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 56, 525, 925
ApoI RAATTY 1 cut(s) 334
ArsI GACNNNNNNTTYG 2 cut(s) 381, 413
AspLEI GCGC 1 cut(s) 56
AspS9I GGNCC 6 cut(s) 103, 262, 275, 818, 819, 830
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 867
AvaII GGWCC 2 cut(s) 262, 830
BaeGI GKGCMC 2 cut(s) 150, 822
BanI GGYRCC 1 cut(s) 66
BanII GRGCYC 2 cut(s) 217, 822
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 43, 537, 937
BccI CCATC 1 cut(s) 94
BceAI ACGGC 2 cut(s) 132, 206
BciVI GTATCC 1 cut(s) 964
BclI TGATCA 1 cut(s) 451
BcnI CCSGG 1 cut(s) 347
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 33, 281, 299, 486
BfmI CTRYAG 1 cut(s) 194
BfrI CTTAAG 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 755, 775
BfuI GTATCC 1 cut(s) 964
BglI GCCNNNNNGGC 1 cut(s) 282
BisI GCNGC 4 cut(s) 57, 343, 526, 926
BlsI GCNGC 4 cut(s) 58, 344, 527, 927
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 262, 830
BmgT120I GGNCC 6 cut(s) 103, 262, 275, 818, 819, 830
BmiI GGNNCC 8 cut(s) 30, 68, 105, 264, 664, 819, 820, 821
BmrFI CCNGG 1 cut(s) 347
BmrI ACTGGG 2 cut(s) 33, 789
BmsI GCATC 2 cut(s) 994, 1021
BmuI ACTGGG 2 cut(s) 33, 789
BpiI GAAGAC 1 cut(s) 96
BpmI CTGGAG 1 cut(s) 738
Bpu10I CCTNAGC 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 360, 583
BsaXI ACNNNNNCTCC 4 cut(s) 396, 426, 654, 684
Bsc4I CCNNNNNNNGG 8 cut(s) 38, 252, 272, 352, 422, 753, 779, 827
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 28, 721, 784
Bse3DI GCAATG 3 cut(s) 267, 757, 819
BseDI CCNNGG 2 cut(s) 360, 583
BseLI CCNNNNNNNGG 8 cut(s) 38, 252, 272, 352, 422, 753, 779, 827
BseMI GCAATG 3 cut(s) 267, 757, 819
BseMII CTCAG 2 cut(s) 230, 334
BseNI ACTGG 3 cut(s) 28, 721, 784
BseRI GAGGAG 2 cut(s) 320, 420
BseSI GKGCMC 2 cut(s) 150, 822
BseXI GCAGC 3 cut(s) 43, 537, 937
BshFI GGCC 5 cut(s) 104, 221, 276, 685, 820
BshNI GGYRCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 150
BsiSI CCGG 2 cut(s) 273, 347
BslI CCNNNNNNNGG 8 cut(s) 38, 252, 272, 352, 422, 753, 779, 827
BsnI GGCC 5 cut(s) 104, 221, 276, 685, 820
Bsp120I GGGCCC 1 cut(s) 818
Bsp1286I GDGCHC 3 cut(s) 150, 217, 822
Bsp1407I TGTACA 1 cut(s) 688
Bsp143I GATC 4 cut(s) 430, 451, 469, 931
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 3 cut(s) 36, 119, 343
BspANI GGCC 5 cut(s) 104, 221, 276, 685, 820
BspCNI CTCAG 2 cut(s) 229, 333
BspLI GGNNCC 8 cut(s) 30, 68, 105, 264, 664, 819, 820, 821
BspMI ACCTGC 2 cut(s) 755, 775
BspPI GGATC 1 cut(s) 438
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 3 cut(s) 267, 757, 819
BsrFI RCCGGY 1 cut(s) 272
BsrGI TGTACA 1 cut(s) 688
BsrI ACTGG 3 cut(s) 28, 721, 784
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 360, 583
BssMI GATC 4 cut(s) 430, 451, 469, 931
BssT1I CCWWGG 2 cut(s) 360, 583
Bst4CI ACNGT 3 cut(s) 95, 228, 655
Bst6I CTCTTC 3 cut(s) 126, 297, 697
BstAFI CTTAAG 1 cut(s) 185
BstAUI TGTACA 1 cut(s) 688
BstC8I GCNNGC 2 cut(s) 52, 274
BstDEI CTNAG 3 cut(s) 216, 320, 839
BstDSI CCRYGG 1 cut(s) 360
BstHHI GCGC 1 cut(s) 56
BstKTI GATC 4 cut(s) 433, 454, 472, 934
BstMBI GATC 4 cut(s) 430, 451, 469, 931
BstMWI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 987
BstNSI RCATGY 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 194
BstSLI GKGCMC 2 cut(s) 150, 822
BstV1I GCAGC 3 cut(s) 43, 537, 937
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 430
BstYI RGATCY 1 cut(s) 430
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 5 cut(s) 104, 221, 276, 685, 820
BtgI CCRYGG 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 932
BtsIMutI CAGTG 2 cut(s) 516, 971
BveI ACCTGC 2 cut(s) 755, 775
Cac8I GCNNGC 2 cut(s) 52, 274
CfoI GCGC 1 cut(s) 56
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 6 cut(s) 103, 262, 275, 818, 819, 830
Csp6I GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 858
CspCI CAANNNNNGTGG 2 cut(s) 947, 982
CviAII CATG 6 cut(s) 47, 172, 361, 473, 619, 1041
CviQI GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 858
DdeI CTNAG 3 cut(s) 216, 320, 839
DpnI GATC 4 cut(s) 432, 453, 471, 933
DpnII GATC 4 cut(s) 430, 451, 469, 931
DraI TTTAAA 1 cut(s) 139
Eam1104I CTCTTC 3 cut(s) 126, 297, 697
EarI CTCTTC 3 cut(s) 126, 297, 697
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 360, 583
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 217, 822
Eco47I GGWCC 2 cut(s) 262, 830
EcoO109I RGGNCCY 3 cut(s) 262, 818, 819
EcoRI GAATTC 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 360, 583
EcoT38I GRGCYC 2 cut(s) 217, 822
ErhI CCWWGG 2 cut(s) 360, 583
FaeI CATG 6 cut(s) 50, 175, 364, 476, 622, 1044
FatI CATG 6 cut(s) 46, 171, 360, 472, 618, 1040
FauI CCCGC 1 cut(s) 29
FauNDI CATATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 451
Fnu4HI GCNGC 4 cut(s) 57, 343, 526, 926
FriOI GRGCYC 2 cut(s) 217, 822
Fsp4HI GCNGC 4 cut(s) 57, 343, 526, 926
FspBI CTAG 4 cut(s) 33, 281, 299, 486
GlaI GCGC 1 cut(s) 55
GluI GCNGC 4 cut(s) 57, 343, 526, 926
GsuI CTGGAG 1 cut(s) 738
HaeIII GGCC 5 cut(s) 104, 221, 276, 685, 820
HapII CCGG 2 cut(s) 273, 347
HhaI GCGC 1 cut(s) 56
Hin1II CATG 6 cut(s) 50, 175, 364, 476, 622, 1044
Hin6I GCGC 1 cut(s) 54
HinP1I GCGC 1 cut(s) 54
HinfI GANTC 3 cut(s) 356, 623, 862
HpaII CCGG 2 cut(s) 273, 347
HphI GGTGA 1 cut(s) 867
Hpy166II GTNNAC 3 cut(s) 148, 413, 480
Hpy188I TCNGA 3 cut(s) 161, 323, 435
Hpy188III TCNNGA 3 cut(s) 299, 599, 1001
Hpy8I GTNNAC 3 cut(s) 148, 413, 480
HpyAV CCTTC 2 cut(s) 395, 420
HpyCH4III ACNGT 3 cut(s) 95, 228, 655
HpyCH4V TGCA 4 cut(s) 148, 740, 750, 1007
HpyF10VI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 987
HpyF3I CTNAG 3 cut(s) 216, 320, 839
Hsp92II CATG 6 cut(s) 50, 175, 364, 476, 622, 1044
HspAI GCGC 1 cut(s) 54
KroI GCCGGC 1 cut(s) 272
KroNI GCCGGC 1 cut(s) 274
Ksp22I TGATCA 1 cut(s) 451
Kzo9I GATC 4 cut(s) 430, 451, 469, 931
LmnI GCTCC 1 cut(s) 662
Lsp1109I GCAGC 3 cut(s) 43, 537, 937
LweI GCATC 2 cut(s) 994, 1021
MaeI CTAG 4 cut(s) 33, 281, 299, 486
MalI GATC 4 cut(s) 432, 453, 471, 933
MboI GATC 4 cut(s) 430, 451, 469, 931
MboII GAAGA 8 cut(s) 98, 101, 140, 143, 314, 621, 714, 1039
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 3 cut(s) 150, 217, 822
MluCI AATT 6 cut(s) 179, 334, 436, 612, 676, 994
MlyI GAGTC 2 cut(s) 632, 871
MroNI GCCGGC 1 cut(s) 272
MseI TTAA 2 cut(s) 138, 186
MslI CAYNNNNRTG 1 cut(s) 1017
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 273, 347
MspR9I CCNGG 1 cut(s) 347
MwoI GCNNNNNNNGC 5 cut(s) 42, 51, 56, 282, 987
NaeI GCCGGC 1 cut(s) 274
NciI CCSGG 1 cut(s) 347
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 236
NdeII GATC 4 cut(s) 430, 451, 469, 931
NgoMIV GCCGGC 1 cut(s) 272
NlaIII CATG 6 cut(s) 50, 175, 364, 476, 622, 1044
NlaIV GGNNCC 8 cut(s) 30, 68, 105, 264, 664, 819, 820, 821
NspI RCATGY 1 cut(s) 175
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 171
PdiI GCCGGC 1 cut(s) 274
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 58, 344, 527, 927
PleI GAGTC 2 cut(s) 631, 870
PpsI GAGTC 2 cut(s) 631, 870
PpuMI RGGWCCY 1 cut(s) 262
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 8 cut(s) 30, 68, 105, 264, 664, 819, 820, 821
PspOMI GGGCCC 1 cut(s) 818
PspPI GGNCC 6 cut(s) 103, 262, 275, 818, 819, 830
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 9 cut(s) 225, 290, 414, 481, 647, 690, 696, 789, 859
RsaNI GTAC 9 cut(s) 224, 289, 413, 480, 646, 689, 695, 788, 858
RseI CAYNNNNRTG 1 cut(s) 1017
SaqAI TTAA 2 cut(s) 138, 186
SatI GCNGC 4 cut(s) 57, 343, 526, 926
Sau3AI GATC 4 cut(s) 430, 451, 469, 931
Sau96I GGNCC 6 cut(s) 103, 262, 275, 818, 819, 830
SchI GAGTC 2 cut(s) 632, 871
ScrFI CCNGG 1 cut(s) 347
SduI GDGCHC 3 cut(s) 150, 217, 822
SetI ASST 9 cut(s) 34, 83, 145, 330, 412, 749, 789, 859, 880
SfaNI GCATC 2 cut(s) 994, 1021
SfcI CTRYAG 1 cut(s) 194
SinI GGWCC 2 cut(s) 262, 830
SmiMI CAYNNNNRTG 1 cut(s) 1017
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 6 cut(s) 179, 334, 436, 612, 676, 994
SseBI AGGCCT 1 cut(s) 685
SsiI CCGC 3 cut(s) 36, 119, 343
SspMI CTAG 4 cut(s) 33, 281, 299, 486
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 2 cut(s) 360, 583
TaaI ACNGT 3 cut(s) 95, 228, 655
TaqI TCGA 3 cut(s) 5, 338, 399
TasI AATT 6 cut(s) 179, 334, 436, 612, 676, 994
TatI WGTACW 3 cut(s) 288, 688, 694
TauI GCSGC 1 cut(s) 345
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 138, 186
Tru9I TTAA 2 cut(s) 138, 186
TscAI CASTG 2 cut(s) 523, 971
TseI GCWGC 3 cut(s) 56, 525, 925
TspDTI ATGAA 3 cut(s) 223, 629, 1035
TspRI CASTG 2 cut(s) 523, 971
Vha464I CTTAAG 1 cut(s) 185
VneI GTGCAC 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 262, 830
XapI RAATTY 1 cut(s) 334
XbaI TCTAGA 1 cut(s) 298
XceI RCATGY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XspI CTAG 4 cut(s) 33, 281, 299, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.