Prupe.4G055400_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014688
Physical Location & Seq
Forward (+)
2664536 .. 2666157
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055400.1

Sequence Viewer

Length: 1098 bp
ATGTCAATGGGTAGCGGAAATGGTGGGGAGCTCAACAGCCGCCATGCGTGCGCGGCGTGCCGGCACCAAAGGAAGAAGTGTGACGATGATTGTGTGATGGCTCCATACTTCACAGCAGAGAAGGAAGAAGCTTTCAGAGCAGTGCACAAGATTTTCGGAGTTAGCAACACGTCAAAGTTGCTAAAAAACCTAGAGGATAAGAACCACAGGGGTAGGGCTGCGGAGTCTTTCATATGGGAAGCCTGTACGTGGAAGCAAGACCCTGTCAATGGACCTCTAGGTAAGTATAGACAATTAGAAAGAGAGATTGCTCTGCTTAGAGACGCATTGCAACGACAACAAGAAGAAGAAGAAGAACAAGAAAAGGATTGTTTGGCTTTGCCATCATCCACAGTGGAGCAAGAGTCAATTGCCTTGGACCAAGGGAGCAATAATGGTAGTGACATGACTTATGGTTATGCTAATCAAAATTTAGCACCTACTAATGGTACTTATAGTTCTCTGTTACAAGGGCAAGAGGTCACAGAGAGAAAGGGATTAGTGGATAATAATTGTGTTACAGGTTCTAATTATCAGCCAGCAGTTATTTCACAAGGTGGGCAACAAGCATTAGGGCAAGGGAGACAAGAGACACAAAGAGTGATTGGATTTGGTCCTCCATTAATGCCATTTGACCCAACAATTCAAGGAGGCAATGGAAGGCCTATGCGATTTCAAGGACAGGGCAGAGGAATTGCAGGATTGGATTGTGCAATAAATTCTCCTATGGGGCCAAACATATATGGGCAAATTAGAGGCCATGTAGCTTTTGACCCTTCTCAGAGACAATTTGGGCAAGTGGGTGCAGCTCAGATTGGCCCAAAATTTAGTGAGGGTTTTCCAGGCCACATGAGAGCTATCACCCAAATACAGGATGCTGGGTTTTTACCTTATCATCATCATCTTCTTCATCATCAGCCAATTCATATACAAAGACAGGGGATGAGCCAAGCTCAAAATCACCATAGTTTTCAACAATACTCTTTCAACAATCACCAGAGTTACGAAAATGGTCAAGATGTAGAGCACTTCAATCAAGTGAAAAGTGAAAGGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

366

Amino Acids

40.59

Weight (kDa)

6.46

Isoelectric Point (pI)

48.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014688)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08300
malus_domestica MD05G1307000.v1.1 MD10G1286400.v1.1
prunus_persica Prupe.4G055400_v2.0.a1
pyrus_communis pycom05g28390
rosa_chinensis RchiOBHm_Chr5g0009701
rosa_laevigata RLG00000031681
rosa_multiflora Rmu_sc0005805.1_g000004 Rmu_sc0019694.1_g000003 Rmu_sc0034758.1_g000001
rosa_roxburghii Rroxscaffold_1G00066510
rosa_rugosa Rorug04G0445000
rosa_samantha Rh5AG076500 Rh5BG071700 Rh5CG084300 Rh5DG072300
rosa_wichuraiana Rw5G007050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccII CGCG 1 cut(s) 53
AciI CCGC 4 cut(s) 15, 40, 53, 221
AcsI RAATTY 3 cut(s) 469, 757, 863
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 2 cut(s) 247, 490
AfiI CCNNNNNNNGG 4 cut(s) 249, 269, 485, 910
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 5 cut(s) 686, 716, 1013, 1027, 1072
AjiI CACGTC 1 cut(s) 171
AjnI CCWGG 1 cut(s) 880
AluBI AGCT 6 cut(s) 31, 131, 806, 848, 896, 992
AluI AGCT 6 cut(s) 31, 131, 806, 848, 896, 992
Alw21I GWGCWC 3 cut(s) 33, 147, 1068
Alw26I GTCTC 4 cut(s) 315, 616, 623, 817
Alw44I GTGCAC 1 cut(s) 143
AoxI GGCC 5 cut(s) 701, 770, 796, 856, 883
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 2 cut(s) 218, 845
ApoI RAATTY 3 cut(s) 469, 757, 863
AseI ATTAAT 1 cut(s) 662
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 5 cut(s) 272, 418, 653, 770, 857
AsuHPI GGTGA 3 cut(s) 892, 992, 1025
AvaII GGWCC 3 cut(s) 272, 418, 653
BaeGI GKGCMC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 33, 147, 1068
BbvI GCAGC 2 cut(s) 205, 857
BccI CCATC 2 cut(s) 91, 391
BciT130I CCWGG 1 cut(s) 882
BcoDI GTCTC 4 cut(s) 315, 616, 623, 817
BfaI CTAG 2 cut(s) 191, 278
BisI GCNGC 4 cut(s) 40, 54, 219, 846
BlsI GCNGC 4 cut(s) 41, 55, 220, 847
Bme1390I CCNGG 1 cut(s) 882
Bme18I GGWCC 3 cut(s) 272, 418, 653
BmgBI CACGTC 1 cut(s) 171
BmgT120I GGNCC 5 cut(s) 272, 418, 653, 770, 857
BmiI GGNNCC 3 cut(s) 65, 102, 771
BmrFI CCNGG 1 cut(s) 882
BmsI GCATC 1 cut(s) 904
BplI GAGNNNNNCTC 2 cut(s) 976, 1008
BsaAI YACGTR 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 414, 421
BsaXI ACNNNNNCTCC 2 cut(s) 389, 419
Bsc4I CCNNNNNNNGG 4 cut(s) 249, 269, 485, 910
Bse118I RCCGGY 1 cut(s) 60
Bse3DI GCAATG 2 cut(s) 326, 700
BseBI CCWGG 1 cut(s) 882
BseDI CCNNGG 2 cut(s) 414, 421
BseGI GGATG 3 cut(s) 386, 919, 987
BseLI CCNNNNNNNGG 4 cut(s) 249, 269, 485, 910
BseMI GCAATG 2 cut(s) 326, 700
BseMII CTCAG 2 cut(s) 833, 863
BseSI GKGCMC 1 cut(s) 147
BseXI GCAGC 2 cut(s) 205, 857
BseYI CCCAGC 1 cut(s) 917
BsgI GTGCAG 1 cut(s) 864
Bsh1236I CGCG 1 cut(s) 53
BshFI GGCC 5 cut(s) 703, 772, 798, 858, 885
BshNI GGYRCC 1 cut(s) 63
BsiHKAI GWGCWC 3 cut(s) 33, 147, 1068
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 4 cut(s) 249, 269, 485, 910
BsmAI GTCTC 4 cut(s) 315, 616, 623, 817
BsmBI CGTCTC 1 cut(s) 315
BsnI GGCC 5 cut(s) 703, 772, 798, 858, 885
Bsp1286I GDGCHC 3 cut(s) 33, 147, 1068
BspACI CCGC 4 cut(s) 15, 40, 53, 221
BspANI GGCC 5 cut(s) 703, 772, 798, 858, 885
BspCNI CTCAG 2 cut(s) 832, 862
BspFNI CGCG 1 cut(s) 53
BspLI GGNNCC 3 cut(s) 65, 102, 771
BspT107I GGYRCC 1 cut(s) 63
BsrDI GCAATG 2 cut(s) 326, 700
BsrFI RCCGGY 1 cut(s) 60
BssAI RCCGGY 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 414, 421
BssT1I CCWWGG 2 cut(s) 414, 421
Bst2UI CCWGG 1 cut(s) 882
Bst4CI ACNGT 1 cut(s) 394
BstBAI YACGTR 1 cut(s) 249
BstC8I GCNNGC 4 cut(s) 49, 58, 62, 579
BstDEI CTNAG 3 cut(s) 317, 819, 849
BstF5I GGATG 3 cut(s) 386, 919, 987
BstFNI CGCG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 53
BstMAI GTCTC 4 cut(s) 315, 616, 623, 817
BstMWI GCNNNNNNNGC 4 cut(s) 48, 53, 57, 137
BstNI CCWGG 1 cut(s) 882
BstSCI CCNGG 1 cut(s) 880
BstSLI GKGCMC 1 cut(s) 147
BstUI CGCG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 205, 857
BsuRI GGCC 5 cut(s) 703, 772, 798, 858, 885
BtrI CACGTC 1 cut(s) 171
BtsCI GGATG 3 cut(s) 386, 919, 987
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 2 cut(s) 147, 399
Cac8I GCNNGC 4 cut(s) 49, 58, 62, 579
CfoI GCGC 1 cut(s) 53
Cfr10I RCCGGY 1 cut(s) 60
Cfr13I GGNCC 5 cut(s) 272, 418, 653, 770, 857
CseI GACGC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 246, 489
CviAII CATG 4 cut(s) 44, 445, 800, 889
CviQI GTAC 2 cut(s) 246, 489
DdeI CTNAG 3 cut(s) 317, 819, 849
DraIII CACNNNGTG 1 cut(s) 596
Ecl136II GAGCTC 1 cut(s) 31
Eco130I CCWWGG 2 cut(s) 414, 421
Eco147I AGGCCT 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 33
Eco47I GGWCC 3 cut(s) 272, 418, 653
Eco53kI GAGCTC 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 880
EcoT14I CCWWGG 2 cut(s) 414, 421
EcoT38I GRGCYC 1 cut(s) 33
ErhI CCWWGG 2 cut(s) 414, 421
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 4 cut(s) 47, 448, 803, 892
FatI CATG 4 cut(s) 43, 444, 799, 888
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 4 cut(s) 40, 54, 219, 846
FokI GGATG 3 cut(s) 373, 926, 994
FriOI GRGCYC 1 cut(s) 33
Fsp4HI GCNGC 4 cut(s) 40, 54, 219, 846
FspBI CTAG 2 cut(s) 191, 278
GlaI GCGC 1 cut(s) 52
GluI GCNGC 4 cut(s) 40, 54, 219, 846
GsaI CCCAGC 1 cut(s) 921
HaeIII GGCC 5 cut(s) 703, 772, 798, 858, 885
HapII CCGG 1 cut(s) 61
HgaI GACGC 1 cut(s) 332
HhaI GCGC 1 cut(s) 53
Hin1II CATG 4 cut(s) 47, 448, 803, 892
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 129
HinfI GANTC 2 cut(s) 224, 404
HpaII CCGG 1 cut(s) 61
HphI GGTGA 3 cut(s) 892, 992, 1025
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 137, 158, 822, 852
Hpy188III TCNNGA 1 cut(s) 1055
Hpy8I GTNNAC 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 115, 693, 825
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4IV ACGT 2 cut(s) 170, 248
HpyCH4V TGCA 5 cut(s) 145, 331, 737, 752, 845
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 53, 57, 137
HpyF3I CTNAG 3 cut(s) 317, 819, 849
HpySE526I ACGT 2 cut(s) 170, 248
Hsp92II CATG 4 cut(s) 47, 448, 803, 892
HspAI GCGC 1 cut(s) 51
KroI GCCGGC 1 cut(s) 60
KroNI GCCGGC 1 cut(s) 62
LmnI GCTCC 4 cut(s) 28, 106, 397, 426
Lsp1109I GCAGC 2 cut(s) 205, 857
LweI GCATC 1 cut(s) 904
MaeI CTAG 2 cut(s) 191, 278
MaeII ACGT 2 cut(s) 170, 248
MaeIII GTNAC 6 cut(s) 80, 440, 504, 520, 556, 1040
MboII GAAGA 8 cut(s) 85, 137, 356, 359, 362, 365, 935, 938
MfeI CAATTG 1 cut(s) 408
MhlI GDGCHC 3 cut(s) 33, 147, 1068
MlyI GAGTC 2 cut(s) 233, 413
MnlI CCTC 8 cut(s) 187, 285, 511, 666, 683, 722, 788, 865
MroNI GCCGGC 1 cut(s) 60
MseI TTAA 1 cut(s) 662
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 882
MunI CAATTG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 882
MvnI CGCG 1 cut(s) 53
MwoI GCNNNNNNNGC 4 cut(s) 48, 53, 57, 137
NaeI GCCGGC 1 cut(s) 62
NdeI CATATG 1 cut(s) 233
NgoMIV GCCGGC 1 cut(s) 60
NlaIII CATG 4 cut(s) 47, 448, 803, 892
NlaIV GGNNCC 3 cut(s) 65, 102, 771
NmuCI GTSAC 3 cut(s) 80, 440, 520
PceI AGGCCT 1 cut(s) 703
PdiI GCCGGC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 263
PkrI GCNGC 4 cut(s) 41, 55, 220, 847
PleI GAGTC 2 cut(s) 232, 412
PpsI GAGTC 2 cut(s) 232, 412
Ppu21I YACGTR 1 cut(s) 249
PshBI ATTAAT 1 cut(s) 662
Psp124BI GAGCTC 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 880
PspFI CCCAGC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 880
PspN4I GGNNCC 3 cut(s) 65, 102, 771
PspPI GGNCC 5 cut(s) 272, 418, 653, 770, 857
PsrI GAACNNNNNNTAC 2 cut(s) 481, 513
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 2 cut(s) 247, 490
RsaNI GTAC 2 cut(s) 246, 489
SacI GAGCTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 662
SatI GCNGC 4 cut(s) 40, 54, 219, 846
Sau96I GGNCC 5 cut(s) 272, 418, 653, 770, 857
SchI GAGTC 2 cut(s) 233, 413
ScrFI CCNGG 1 cut(s) 882
SduI GDGCHC 3 cut(s) 33, 147, 1068
SfaNI GCATC 1 cut(s) 904
SinI GGWCC 3 cut(s) 272, 418, 653
SseBI AGGCCT 1 cut(s) 703
SsiI CCGC 4 cut(s) 15, 40, 53, 221
SspMI CTAG 2 cut(s) 191, 278
SstI GAGCTC 1 cut(s) 33
StuI AGGCCT 1 cut(s) 703
StyD4I CCNGG 1 cut(s) 880
StyI CCWWGG 2 cut(s) 414, 421
TaaI ACNGT 1 cut(s) 394
TaiI ACGT 2 cut(s) 173, 251
TauI GCSGC 2 cut(s) 42, 56
Tru1I TTAA 1 cut(s) 662
Tru9I TTAA 1 cut(s) 662
TscAI CASTG 2 cut(s) 147, 399
TseFI GTSAC 3 cut(s) 80, 440, 520
TseI GCWGC 2 cut(s) 218, 845
Tsp45I GTSAC 3 cut(s) 80, 440, 520
TspDTI ATGAA 3 cut(s) 220, 938, 953
TspRI CASTG 2 cut(s) 147, 399
Tth111I GACNNNGTC 1 cut(s) 263
VneI GTGCAC 1 cut(s) 143
VpaK11BI GGWCC 3 cut(s) 272, 418, 653
VspI ATTAAT 1 cut(s) 662
XapI RAATTY 3 cut(s) 469, 757, 863
XspI CTAG 2 cut(s) 191, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.